Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20353 and SM_b20354 overlap by 4 nucleotides SM_b20354 and SM_b20355 are separated by 122 nucleotides SM_b20355 and SM_b20356 overlap by 4 nucleotides
SM_b20353: SM_b20353 - oxidoreductase, at 360,832 to 361,866
_b20353
SM_b20354: SM_b20354 - hypothetical protein, at 361,863 to 363,782
_b20354
SM_b20355: SM_b20355 - hypothetical protein, at 363,905 to 364,663
_b20355
SM_b20356: SM_b20356 - sensory histidine kinase, at 364,660 to 367,413
_b20356
Position (kb) 361
362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.992 kb on - strand, within SM_b20353 at 361.233 kb on - strand, within SM_b20353 at 361.284 kb on - strand, within SM_b20353 at 361.390 kb on + strand, within SM_b20353 at 361.519 kb on + strand, within SM_b20353 at 361.520 kb on - strand, within SM_b20353 at 361.636 kb on - strand, within SM_b20353 at 361.764 kb on + strand at 361.813 kb on + strand at 361.814 kb on - strand at 361.890 kb on + strand at 361.891 kb on + strand at 361.892 kb on - strand at 361.934 kb on - strand at 362.159 kb on + strand, within SM_b20354 at 362.466 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354 at 362.994 kb on + strand, within SM_b20354 at 362.995 kb on - strand, within SM_b20354 at 362.995 kb on - strand, within SM_b20354 at 363.051 kb on + strand, within SM_b20354 at 363.052 kb on - strand, within SM_b20354 at 363.072 kb on - strand, within SM_b20354 at 363.100 kb on - strand, within SM_b20354 at 363.100 kb on - strand, within SM_b20354 at 363.219 kb on + strand, within SM_b20354 at 363.329 kb on + strand, within SM_b20354 at 363.330 kb on - strand, within SM_b20354 at 363.364 kb on - strand, within SM_b20354 at 363.364 kb on - strand, within SM_b20354 at 363.364 kb on - strand, within SM_b20354 at 363.398 kb on - strand, within SM_b20354 at 363.398 kb on - strand, within SM_b20354 at 363.398 kb on - strand, within SM_b20354 at 363.398 kb on - strand, within SM_b20354 at 363.660 kb on - strand at 363.660 kb on - strand at 363.867 kb on - strand at 364.065 kb on - strand, within SM_b20355 at 364.263 kb on + strand, within SM_b20355 at 364.263 kb on + strand, within SM_b20355 at 364.264 kb on - strand, within SM_b20355 at 364.478 kb on + strand, within SM_b20355 at 364.479 kb on - strand, within SM_b20355 at 364.479 kb on - strand, within SM_b20355 at 364.479 kb on - strand, within SM_b20355 at 364.535 kb on + strand, within SM_b20355 at 364.539 kb on - strand, within SM_b20355
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 360,992 - SM_b20353 0.15 +0.3 361,233 - SM_b20353 0.39 -1.0 361,284 - SM_b20353 0.44 -0.5 361,390 + SM_b20353 0.54 +0.3 361,519 + SM_b20353 0.66 -0.6 361,520 - SM_b20353 0.66 +0.8 361,636 - SM_b20353 0.78 +0.2 361,764 + -0.1 361,813 + -0.9 361,814 - +0.5 361,890 + -2.9 361,891 + -0.2 361,892 - -1.6 361,934 - +0.1 362,159 + SM_b20354 0.15 +0.5 362,466 + SM_b20354 0.31 +0.4 362,475 + SM_b20354 0.32 +0.2 362,475 + SM_b20354 0.32 -0.7 362,475 + SM_b20354 0.32 +0.0 362,475 + SM_b20354 0.32 +1.5 362,476 - SM_b20354 0.32 -0.4 362,476 - SM_b20354 0.32 -0.5 362,686 + SM_b20354 0.43 -0.1 362,686 + SM_b20354 0.43 +0.5 362,994 + SM_b20354 0.59 +0.8 362,995 - SM_b20354 0.59 +1.4 362,995 - SM_b20354 0.59 -0.0 363,051 + SM_b20354 0.62 +0.5 363,052 - SM_b20354 0.62 +0.5 363,072 - SM_b20354 0.63 +2.1 363,100 - SM_b20354 0.64 +0.1 363,100 - SM_b20354 0.64 +0.6 363,219 + SM_b20354 0.71 +0.9 363,329 + SM_b20354 0.76 +0.3 363,330 - SM_b20354 0.76 -0.9 363,364 - SM_b20354 0.78 +0.0 363,364 - SM_b20354 0.78 +0.8 363,364 - SM_b20354 0.78 -0.3 363,398 - SM_b20354 0.80 +0.5 363,398 - SM_b20354 0.80 -0.6 363,398 - SM_b20354 0.80 +0.9 363,398 - SM_b20354 0.80 -0.0 363,660 - +0.6 363,660 - -0.0 363,867 - +0.4 364,065 - SM_b20355 0.21 -1.4 364,263 + SM_b20355 0.47 -0.3 364,263 + SM_b20355 0.47 +0.1 364,264 - SM_b20355 0.47 +1.8 364,478 + SM_b20355 0.75 +1.0 364,479 - SM_b20355 0.76 +3.6 364,479 - SM_b20355 0.76 +0.9 364,479 - SM_b20355 0.76 -1.0 364,535 + SM_b20355 0.83 -0.4 364,539 - SM_b20355 0.84 +0.6
Or see this region's nucleotide sequence