Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31655

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31655 and RR42_RS31660 are separated by 173 nucleotides RR42_RS31655: RR42_RS31655 - hypothetical protein, at 2,482,957 to 2,483,160 _RS31655 RR42_RS31660: RR42_RS31660 - hypothetical protein, at 2,483,334 to 2,484,710 _RS31660 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -2 -1 0 1 2at 2482.020 kb on + strandat 2482.262 kb on + strandat 2482.263 kb on - strandat 2482.334 kb on + strandat 2482.475 kb on + strandat 2482.476 kb on - strandat 2482.583 kb on - strandat 2482.744 kb on + strandat 2482.744 kb on + strandat 2482.744 kb on + strandat 2482.801 kb on + strandat 2482.806 kb on + strandat 2482.806 kb on + strandat 2482.806 kb on + strandat 2482.807 kb on - strandat 2482.846 kb on + strandat 2482.847 kb on - strandat 2482.870 kb on + strandat 2482.871 kb on - strandat 2482.959 kb on - strandat 2482.959 kb on - strandat 2483.021 kb on + strand, within RR42_RS31655at 2483.021 kb on + strand, within RR42_RS31655at 2483.022 kb on - strand, within RR42_RS31655at 2483.022 kb on - strand, within RR42_RS31655at 2483.136 kb on + strand, within RR42_RS31655at 2483.137 kb on - strand, within RR42_RS31655at 2483.277 kb on - strandat 2483.279 kb on + strandat 2483.280 kb on - strandat 2483.367 kb on + strandat 2483.367 kb on + strandat 2483.367 kb on + strandat 2483.367 kb on + strandat 2483.367 kb on + strandat 2483.376 kb on - strandat 2483.384 kb on + strandat 2483.390 kb on + strandat 2483.391 kb on - strandat 2483.433 kb on + strandat 2483.433 kb on + strandat 2483.433 kb on + strandat 2483.655 kb on + strand, within RR42_RS31660at 2483.752 kb on - strand, within RR42_RS31660at 2483.816 kb on + strand, within RR42_RS31660at 2483.816 kb on + strand, within RR42_RS31660at 2483.883 kb on + strand, within RR42_RS31660at 2483.884 kb on - strand, within RR42_RS31660at 2483.887 kb on + strand, within RR42_RS31660at 2483.887 kb on + strand, within RR42_RS31660at 2483.945 kb on - strand, within RR42_RS31660at 2484.060 kb on - strand, within RR42_RS31660at 2484.127 kb on - strand, within RR42_RS31660at 2484.127 kb on - strand, within RR42_RS31660at 2484.153 kb on + strand, within RR42_RS31660at 2484.154 kb on - strand, within RR42_RS31660

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,482,020 + +1.2
2,482,262 + +2.1
2,482,263 - -0.5
2,482,334 + +0.2
2,482,475 + -0.1
2,482,476 - -0.5
2,482,583 - -0.8
2,482,744 + -0.3
2,482,744 + -0.0
2,482,744 + +0.9
2,482,801 + -0.0
2,482,806 + +0.3
2,482,806 + +1.1
2,482,806 + -0.0
2,482,807 - -1.3
2,482,846 + -0.2
2,482,847 - +1.3
2,482,870 + +0.0
2,482,871 - -0.4
2,482,959 - -0.3
2,482,959 - -0.6
2,483,021 + RR42_RS31655 0.31 -0.0
2,483,021 + RR42_RS31655 0.31 -0.6
2,483,022 - RR42_RS31655 0.32 +0.3
2,483,022 - RR42_RS31655 0.32 -1.7
2,483,136 + RR42_RS31655 0.88 +0.2
2,483,137 - RR42_RS31655 0.88 -0.9
2,483,277 - -0.2
2,483,279 + +0.6
2,483,280 - +0.2
2,483,367 + +0.0
2,483,367 + +1.4
2,483,367 + -0.9
2,483,367 + -0.1
2,483,367 + +0.1
2,483,376 - +0.1
2,483,384 + +0.2
2,483,390 + +0.8
2,483,391 - -1.2
2,483,433 + -2.4
2,483,433 + -0.2
2,483,433 + +1.2
2,483,655 + RR42_RS31660 0.23 +0.3
2,483,752 - RR42_RS31660 0.30 +0.1
2,483,816 + RR42_RS31660 0.35 -0.2
2,483,816 + RR42_RS31660 0.35 +1.4
2,483,883 + RR42_RS31660 0.40 +0.2
2,483,884 - RR42_RS31660 0.40 +1.0
2,483,887 + RR42_RS31660 0.40 +0.7
2,483,887 + RR42_RS31660 0.40 +0.0
2,483,945 - RR42_RS31660 0.44 -0.2
2,484,060 - RR42_RS31660 0.53 +0.2
2,484,127 - RR42_RS31660 0.58 -1.1
2,484,127 - RR42_RS31660 0.58 -0.5
2,484,153 + RR42_RS31660 0.59 +0.8
2,484,154 - RR42_RS31660 0.60 +0.5

Or see this region's nucleotide sequence