Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27305 and RR42_RS27310 are separated by 124 nucleotides RR42_RS27310 and RR42_RS27315 are separated by 59 nucleotides RR42_RS27315 and RR42_RS27320 are separated by 29 nucleotides RR42_RS27320 and RR42_RS27325 are separated by 101 nucleotides
RR42_RS27305: RR42_RS27305 - gamma-glutamyltransferase, at 1,480,471 to 1,481,964
_RS27305
RR42_RS27310: RR42_RS27310 - ferredoxin, at 1,482,089 to 1,482,373
_RS27310
RR42_RS27315: RR42_RS27315 - ferredoxin, at 1,482,433 to 1,482,786
_RS27315
RR42_RS27320: RR42_RS27320 - ferredoxin, at 1,482,816 to 1,483,184
_RS27320
RR42_RS27325: RR42_RS27325 - aldehyde dehydrogenase, at 1,483,286 to 1,484,017
_RS27325
Position (kb)
1482
1483
1484 Strain fitness (log2 ratio)
-2
-1
0
1 at 1482.028 kb on - strand at 1482.028 kb on - strand at 1482.421 kb on + strand at 1482.421 kb on + strand at 1482.575 kb on + strand, within RR42_RS27315 at 1482.575 kb on + strand, within RR42_RS27315 at 1482.576 kb on - strand, within RR42_RS27315 at 1482.576 kb on - strand, within RR42_RS27315 at 1482.696 kb on - strand, within RR42_RS27315 at 1482.704 kb on + strand, within RR42_RS27315 at 1482.705 kb on - strand, within RR42_RS27315 at 1482.705 kb on - strand, within RR42_RS27315 at 1482.705 kb on - strand, within RR42_RS27315 at 1482.710 kb on + strand, within RR42_RS27315 at 1482.710 kb on + strand, within RR42_RS27315 at 1482.775 kb on + strand at 1482.776 kb on - strand at 1482.778 kb on + strand at 1482.778 kb on + strand at 1482.779 kb on - strand at 1482.779 kb on - strand at 1482.779 kb on - strand at 1482.779 kb on - strand at 1482.779 kb on - strand at 1482.782 kb on + strand at 1482.782 kb on + strand at 1482.783 kb on - strand at 1482.783 kb on - strand at 1482.783 kb on - strand at 1482.817 kb on + strand at 1483.069 kb on + strand, within RR42_RS27320 at 1483.070 kb on - strand, within RR42_RS27320 at 1483.170 kb on + strand at 1483.184 kb on + strand at 1483.184 kb on + strand at 1483.185 kb on - strand at 1484.062 kb on + strand at 1484.062 kb on + strand at 1484.062 kb on + strand at 1484.160 kb on - strand at 1484.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 1,482,028 - -0.1 1,482,028 - +0.7 1,482,421 + -0.9 1,482,421 + +0.9 1,482,575 + RR42_RS27315 0.40 -0.2 1,482,575 + RR42_RS27315 0.40 -0.8 1,482,576 - RR42_RS27315 0.40 +0.8 1,482,576 - RR42_RS27315 0.40 +0.1 1,482,696 - RR42_RS27315 0.74 +0.2 1,482,704 + RR42_RS27315 0.77 +0.7 1,482,705 - RR42_RS27315 0.77 +0.4 1,482,705 - RR42_RS27315 0.77 +0.0 1,482,705 - RR42_RS27315 0.77 -0.2 1,482,710 + RR42_RS27315 0.78 -1.1 1,482,710 + RR42_RS27315 0.78 -1.2 1,482,775 + -1.3 1,482,776 - -0.1 1,482,778 + +1.4 1,482,778 + -0.7 1,482,779 - -0.2 1,482,779 - -1.7 1,482,779 - +0.5 1,482,779 - +0.7 1,482,779 - +0.9 1,482,782 + +0.6 1,482,782 + -0.8 1,482,783 - +0.4 1,482,783 - +0.2 1,482,783 - +0.9 1,482,817 + -0.3 1,483,069 + RR42_RS27320 0.69 +1.6 1,483,070 - RR42_RS27320 0.69 +0.8 1,483,170 + -0.8 1,483,184 + +0.4 1,483,184 + +0.7 1,483,185 - -0.3 1,484,062 + -0.6 1,484,062 + +1.1 1,484,062 + -0.2 1,484,160 - -2.1 1,484,160 - +0.8
Or see this region's nucleotide sequence