Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27320

Experiment: L-Tryptophan (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS27305 and RR42_RS27310 are separated by 124 nucleotidesRR42_RS27310 and RR42_RS27315 are separated by 59 nucleotidesRR42_RS27315 and RR42_RS27320 are separated by 29 nucleotidesRR42_RS27320 and RR42_RS27325 are separated by 101 nucleotides RR42_RS27305: RR42_RS27305 - gamma-glutamyltransferase, at 1,480,471 to 1,481,964 _RS27305 RR42_RS27310: RR42_RS27310 - ferredoxin, at 1,482,089 to 1,482,373 _RS27310 RR42_RS27315: RR42_RS27315 - ferredoxin, at 1,482,433 to 1,482,786 _RS27315 RR42_RS27320: RR42_RS27320 - ferredoxin, at 1,482,816 to 1,483,184 _RS27320 RR42_RS27325: RR42_RS27325 - aldehyde dehydrogenase, at 1,483,286 to 1,484,017 _RS27325 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -2 -1 0 1at 1482.028 kb on - strandat 1482.028 kb on - strandat 1482.421 kb on + strandat 1482.421 kb on + strandat 1482.575 kb on + strand, within RR42_RS27315at 1482.575 kb on + strand, within RR42_RS27315at 1482.576 kb on - strand, within RR42_RS27315at 1482.576 kb on - strand, within RR42_RS27315at 1482.696 kb on - strand, within RR42_RS27315at 1482.704 kb on + strand, within RR42_RS27315at 1482.705 kb on - strand, within RR42_RS27315at 1482.705 kb on - strand, within RR42_RS27315at 1482.705 kb on - strand, within RR42_RS27315at 1482.710 kb on + strand, within RR42_RS27315at 1482.710 kb on + strand, within RR42_RS27315at 1482.775 kb on + strandat 1482.776 kb on - strandat 1482.778 kb on + strandat 1482.778 kb on + strandat 1482.779 kb on - strandat 1482.779 kb on - strandat 1482.779 kb on - strandat 1482.779 kb on - strandat 1482.779 kb on - strandat 1482.782 kb on + strandat 1482.782 kb on + strandat 1482.783 kb on - strandat 1482.783 kb on - strandat 1482.783 kb on - strandat 1482.817 kb on + strandat 1483.069 kb on + strand, within RR42_RS27320at 1483.070 kb on - strand, within RR42_RS27320at 1483.170 kb on + strandat 1483.184 kb on + strandat 1483.184 kb on + strandat 1483.185 kb on - strandat 1484.062 kb on + strandat 1484.062 kb on + strandat 1484.062 kb on + strandat 1484.160 kb on - strandat 1484.160 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
remove
1,482,028 - -0.1
1,482,028 - +0.7
1,482,421 + -0.9
1,482,421 + +0.9
1,482,575 + RR42_RS27315 0.40 -0.2
1,482,575 + RR42_RS27315 0.40 -0.8
1,482,576 - RR42_RS27315 0.40 +0.8
1,482,576 - RR42_RS27315 0.40 +0.1
1,482,696 - RR42_RS27315 0.74 +0.2
1,482,704 + RR42_RS27315 0.77 +0.7
1,482,705 - RR42_RS27315 0.77 +0.4
1,482,705 - RR42_RS27315 0.77 +0.0
1,482,705 - RR42_RS27315 0.77 -0.2
1,482,710 + RR42_RS27315 0.78 -1.1
1,482,710 + RR42_RS27315 0.78 -1.2
1,482,775 + -1.3
1,482,776 - -0.1
1,482,778 + +1.4
1,482,778 + -0.7
1,482,779 - -0.2
1,482,779 - -1.7
1,482,779 - +0.5
1,482,779 - +0.7
1,482,779 - +0.9
1,482,782 + +0.6
1,482,782 + -0.8
1,482,783 - +0.4
1,482,783 - +0.2
1,482,783 - +0.9
1,482,817 + -0.3
1,483,069 + RR42_RS27320 0.69 +1.6
1,483,070 - RR42_RS27320 0.69 +0.8
1,483,170 + -0.8
1,483,184 + +0.4
1,483,184 + +0.7
1,483,185 - -0.3
1,484,062 + -0.6
1,484,062 + +1.1
1,484,062 + -0.2
1,484,160 - -2.1
1,484,160 - +0.8

Or see this region's nucleotide sequence