Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22760 and RR42_RS22765 are separated by 237 nucleotides RR42_RS22765 and RR42_RS22770 are separated by 56 nucleotides
RR42_RS22760: RR42_RS22760 - GntR family transcriptional regulator, at 439,240 to 440,004
_RS22760
RR42_RS22765: RR42_RS22765 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 440,242 to 441,084
_RS22765
RR42_RS22770: RR42_RS22770 - 3-isopropylmalate dehydratase, at 441,141 to 442,541
_RS22770
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.265 kb on - strand at 439.305 kb on + strand at 439.306 kb on - strand at 439.306 kb on - strand at 439.306 kb on - strand at 439.340 kb on + strand, within RR42_RS22760 at 439.340 kb on + strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.341 kb on - strand, within RR42_RS22760 at 439.352 kb on + strand, within RR42_RS22760 at 439.758 kb on + strand, within RR42_RS22760 at 439.938 kb on - strand at 439.938 kb on - strand at 440.005 kb on - strand at 440.073 kb on + strand at 440.073 kb on + strand at 440.073 kb on + strand at 440.074 kb on - strand at 440.074 kb on - strand at 440.194 kb on + strand at 440.194 kb on + strand at 440.194 kb on + strand at 440.256 kb on + strand at 440.256 kb on + strand at 440.257 kb on - strand at 440.257 kb on - strand at 440.257 kb on - strand at 440.308 kb on + strand at 440.308 kb on + strand at 440.359 kb on + strand, within RR42_RS22765 at 440.359 kb on + strand, within RR42_RS22765 at 440.360 kb on - strand, within RR42_RS22765 at 440.360 kb on - strand, within RR42_RS22765 at 440.536 kb on + strand, within RR42_RS22765 at 440.536 kb on + strand, within RR42_RS22765 at 440.915 kb on - strand, within RR42_RS22765 at 440.915 kb on - strand, within RR42_RS22765 at 441.292 kb on + strand, within RR42_RS22770 at 441.292 kb on + strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.293 kb on - strand, within RR42_RS22770 at 441.363 kb on - strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.530 kb on + strand, within RR42_RS22770 at 441.536 kb on + strand, within RR42_RS22770 at 441.588 kb on - strand, within RR42_RS22770 at 441.588 kb on - strand, within RR42_RS22770 at 441.698 kb on + strand, within RR42_RS22770 at 441.699 kb on - strand, within RR42_RS22770 at 441.882 kb on + strand, within RR42_RS22770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 439,265 - +0.9 439,305 + +0.7 439,306 - +1.3 439,306 - +0.3 439,306 - -0.0 439,340 + RR42_RS22760 0.13 +0.3 439,340 + RR42_RS22760 0.13 +0.4 439,341 - RR42_RS22760 0.13 -0.1 439,341 - RR42_RS22760 0.13 -1.4 439,341 - RR42_RS22760 0.13 -1.3 439,341 - RR42_RS22760 0.13 -0.8 439,341 - RR42_RS22760 0.13 +0.7 439,352 + RR42_RS22760 0.15 -0.3 439,758 + RR42_RS22760 0.68 -1.4 439,938 - +1.1 439,938 - +1.0 440,005 - +0.4 440,073 + -1.2 440,073 + -0.4 440,073 + -0.3 440,074 - +1.1 440,074 - +0.9 440,194 + +2.4 440,194 + +1.1 440,194 + +0.1 440,256 + +0.6 440,256 + -0.8 440,257 - -0.2 440,257 - +0.1 440,257 - +0.1 440,308 + -0.3 440,308 + +0.0 440,359 + RR42_RS22765 0.14 +0.6 440,359 + RR42_RS22765 0.14 +0.9 440,360 - RR42_RS22765 0.14 +1.0 440,360 - RR42_RS22765 0.14 -1.3 440,536 + RR42_RS22765 0.35 -2.6 440,536 + RR42_RS22765 0.35 +1.0 440,915 - RR42_RS22765 0.80 -0.1 440,915 - RR42_RS22765 0.80 +0.7 441,292 + RR42_RS22770 0.11 -0.7 441,292 + RR42_RS22770 0.11 +0.8 441,293 - RR42_RS22770 0.11 +0.4 441,293 - RR42_RS22770 0.11 -0.5 441,293 - RR42_RS22770 0.11 +1.4 441,363 - RR42_RS22770 0.16 +0.7 441,530 + RR42_RS22770 0.28 -0.3 441,530 + RR42_RS22770 0.28 +0.1 441,530 + RR42_RS22770 0.28 -1.3 441,530 + RR42_RS22770 0.28 +0.6 441,536 + RR42_RS22770 0.28 -0.3 441,588 - RR42_RS22770 0.32 +0.2 441,588 - RR42_RS22770 0.32 +1.6 441,698 + RR42_RS22770 0.40 +0.8 441,699 - RR42_RS22770 0.40 +0.1 441,882 + RR42_RS22770 0.53 +0.6
Or see this region's nucleotide sequence