Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19880 and RR42_RS19885 are separated by 565 nucleotides RR42_RS19885 and RR42_RS19890 are separated by 231 nucleotides
RR42_RS19880: RR42_RS19880 - hypothetical protein, at 4,292,723 to 4,292,950
_RS19880
RR42_RS19885: RR42_RS19885 - aminoglycoside transporter, at 4,293,516 to 4,296,614
_RS19885
RR42_RS19890: RR42_RS19890 - hypothetical protein, at 4,296,846 to 4,297,199
_RS19890
Position (kb) 4293
4294
4295
4296
4297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4292.543 kb on - strand at 4292.575 kb on + strand at 4292.575 kb on + strand at 4292.595 kb on + strand at 4292.658 kb on + strand at 4292.855 kb on + strand, within RR42_RS19880 at 4292.872 kb on - strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.012 kb on - strand at 4293.044 kb on + strand at 4293.044 kb on + strand at 4293.194 kb on + strand at 4293.927 kb on + strand, within RR42_RS19885 at 4293.927 kb on + strand, within RR42_RS19885 at 4293.928 kb on - strand, within RR42_RS19885 at 4296.647 kb on - strand at 4296.697 kb on + strand at 4296.697 kb on + strand at 4296.697 kb on + strand at 4296.697 kb on + strand at 4296.698 kb on - strand at 4296.698 kb on - strand at 4296.698 kb on - strand at 4296.698 kb on - strand at 4296.698 kb on - strand at 4296.698 kb on - strand at 4296.778 kb on - strand at 4296.829 kb on + strand at 4296.829 kb on + strand at 4296.829 kb on + strand at 4296.829 kb on + strand at 4296.830 kb on - strand at 4296.830 kb on - strand at 4296.863 kb on - strand at 4297.022 kb on + strand, within RR42_RS19890 at 4297.022 kb on + strand, within RR42_RS19890 at 4297.023 kb on - strand, within RR42_RS19890 at 4297.023 kb on - strand, within RR42_RS19890 at 4297.058 kb on + strand, within RR42_RS19890 at 4297.058 kb on + strand, within RR42_RS19890 at 4297.058 kb on + strand, within RR42_RS19890 at 4297.091 kb on - strand, within RR42_RS19890 at 4297.247 kb on + strand at 4297.247 kb on + strand at 4297.250 kb on + strand at 4297.250 kb on + strand at 4297.250 kb on + strand at 4297.251 kb on - strand at 4297.251 kb on - strand at 4297.251 kb on - strand at 4297.251 kb on - strand at 4297.269 kb on - strand at 4297.269 kb on - strand at 4297.269 kb on - strand at 4297.299 kb on - strand at 4297.323 kb on + strand at 4297.323 kb on + strand at 4297.324 kb on - strand at 4297.324 kb on - strand at 4297.324 kb on - strand at 4297.324 kb on - strand at 4297.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 4,292,543 - +1.2 4,292,575 + -0.3 4,292,575 + -0.0 4,292,595 + +0.7 4,292,658 + -0.2 4,292,855 + RR42_RS19880 0.58 -0.1 4,292,872 - RR42_RS19880 0.65 +0.2 4,292,873 + RR42_RS19880 0.66 -0.0 4,292,873 + RR42_RS19880 0.66 +1.9 4,292,873 + RR42_RS19880 0.66 +0.1 4,292,874 - RR42_RS19880 0.66 -0.3 4,292,874 - RR42_RS19880 0.66 +0.4 4,293,011 + +0.4 4,293,011 + +0.8 4,293,011 + -0.8 4,293,011 + -0.5 4,293,011 + -0.6 4,293,012 - -1.1 4,293,044 + +0.8 4,293,044 + -0.3 4,293,194 + +0.5 4,293,927 + RR42_RS19885 0.13 -2.5 4,293,927 + RR42_RS19885 0.13 -0.9 4,293,928 - RR42_RS19885 0.13 +0.2 4,296,647 - +0.1 4,296,697 + -1.1 4,296,697 + -0.1 4,296,697 + +0.6 4,296,697 + +0.2 4,296,698 - -0.6 4,296,698 - +0.8 4,296,698 - +0.1 4,296,698 - -0.0 4,296,698 - -0.7 4,296,698 - +0.6 4,296,778 - +0.0 4,296,829 + -0.1 4,296,829 + +0.6 4,296,829 + +0.4 4,296,829 + -0.4 4,296,830 - +0.7 4,296,830 - +0.7 4,296,863 - +1.2 4,297,022 + RR42_RS19890 0.50 -0.4 4,297,022 + RR42_RS19890 0.50 -0.7 4,297,023 - RR42_RS19890 0.50 +0.4 4,297,023 - RR42_RS19890 0.50 -0.3 4,297,058 + RR42_RS19890 0.60 -0.0 4,297,058 + RR42_RS19890 0.60 -0.5 4,297,058 + RR42_RS19890 0.60 -0.8 4,297,091 - RR42_RS19890 0.69 -0.7 4,297,247 + +0.1 4,297,247 + -0.4 4,297,250 + -0.7 4,297,250 + -0.7 4,297,250 + +0.4 4,297,251 - -0.1 4,297,251 - +0.0 4,297,251 - -0.1 4,297,251 - +0.6 4,297,269 - +0.9 4,297,269 - -0.6 4,297,269 - +0.3 4,297,299 - +1.6 4,297,323 + -1.4 4,297,323 + -0.9 4,297,324 - +1.4 4,297,324 - +0.2 4,297,324 - -1.0 4,297,324 - -0.0 4,297,324 - -0.3
Or see this region's nucleotide sequence