Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18140

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18135 and RR42_RS18140 are separated by 68 nucleotidesRR42_RS18140 and RR42_RS18145 overlap by 4 nucleotidesRR42_RS18145 and RR42_RS18150 are separated by 82 nucleotides RR42_RS18135: RR42_RS18135 - MFS transporter, at 3,924,874 to 3,925,890 _RS18135 RR42_RS18140: RR42_RS18140 - MarR family transcriptional regulator, at 3,925,959 to 3,926,477 _RS18140 RR42_RS18145: RR42_RS18145 - hypothetical protein, at 3,926,474 to 3,926,932 _RS18145 RR42_RS18150: RR42_RS18150 - long-chain fatty acid--CoA ligase, at 3,927,015 to 3,928,697 _RS18150 Position (kb) 3925 3926 3927Strain fitness (log2 ratio) -2 -1 0 1 2at 3924.980 kb on - strand, within RR42_RS18135at 3925.088 kb on + strand, within RR42_RS18135at 3925.213 kb on + strand, within RR42_RS18135at 3925.213 kb on + strand, within RR42_RS18135at 3925.443 kb on + strand, within RR42_RS18135at 3925.465 kb on + strand, within RR42_RS18135at 3925.465 kb on + strand, within RR42_RS18135at 3925.466 kb on - strand, within RR42_RS18135at 3925.466 kb on - strand, within RR42_RS18135at 3925.925 kb on + strandat 3925.926 kb on - strandat 3925.926 kb on - strandat 3925.928 kb on - strandat 3925.928 kb on - strandat 3926.042 kb on + strand, within RR42_RS18140at 3926.316 kb on + strand, within RR42_RS18140at 3926.527 kb on - strand, within RR42_RS18145at 3926.748 kb on + strand, within RR42_RS18145at 3926.787 kb on - strand, within RR42_RS18145at 3926.787 kb on - strand, within RR42_RS18145at 3926.882 kb on + strand, within RR42_RS18145at 3926.882 kb on + strand, within RR42_RS18145at 3926.994 kb on + strandat 3926.994 kb on + strandat 3926.995 kb on - strandat 3926.995 kb on - strandat 3927.115 kb on + strandat 3927.116 kb on - strandat 3927.116 kb on - strandat 3927.116 kb on - strandat 3927.188 kb on - strand, within RR42_RS18150at 3927.188 kb on - strand, within RR42_RS18150at 3927.347 kb on - strand, within RR42_RS18150

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,924,980 - RR42_RS18135 0.10 -0.1
3,925,088 + RR42_RS18135 0.21 -1.7
3,925,213 + RR42_RS18135 0.33 +0.2
3,925,213 + RR42_RS18135 0.33 -1.1
3,925,443 + RR42_RS18135 0.56 +0.4
3,925,465 + RR42_RS18135 0.58 +0.2
3,925,465 + RR42_RS18135 0.58 -0.4
3,925,466 - RR42_RS18135 0.58 +0.3
3,925,466 - RR42_RS18135 0.58 -1.0
3,925,925 + +0.2
3,925,926 - +0.2
3,925,926 - -1.3
3,925,928 - +1.5
3,925,928 - +1.7
3,926,042 + RR42_RS18140 0.16 +2.7
3,926,316 + RR42_RS18140 0.69 +1.7
3,926,527 - RR42_RS18145 0.12 +0.1
3,926,748 + RR42_RS18145 0.60 -0.1
3,926,787 - RR42_RS18145 0.68 +1.1
3,926,787 - RR42_RS18145 0.68 +0.3
3,926,882 + RR42_RS18145 0.89 -0.7
3,926,882 + RR42_RS18145 0.89 -0.4
3,926,994 + -1.1
3,926,994 + +0.7
3,926,995 - +1.1
3,926,995 - +0.2
3,927,115 + -0.8
3,927,116 - +1.0
3,927,116 - -0.5
3,927,116 - +0.3
3,927,188 - RR42_RS18150 0.10 -2.4
3,927,188 - RR42_RS18150 0.10 -1.0
3,927,347 - RR42_RS18150 0.20 +0.1

Or see this region's nucleotide sequence