Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18135 and RR42_RS18140 are separated by 68 nucleotides RR42_RS18140 and RR42_RS18145 overlap by 4 nucleotides RR42_RS18145 and RR42_RS18150 are separated by 82 nucleotides
RR42_RS18135: RR42_RS18135 - MFS transporter, at 3,924,874 to 3,925,890
_RS18135
RR42_RS18140: RR42_RS18140 - MarR family transcriptional regulator, at 3,925,959 to 3,926,477
_RS18140
RR42_RS18145: RR42_RS18145 - hypothetical protein, at 3,926,474 to 3,926,932
_RS18145
RR42_RS18150: RR42_RS18150 - long-chain fatty acid--CoA ligase, at 3,927,015 to 3,928,697
_RS18150
Position (kb)
3925
3926
3927 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3924.980 kb on - strand, within RR42_RS18135 at 3925.088 kb on + strand, within RR42_RS18135 at 3925.213 kb on + strand, within RR42_RS18135 at 3925.213 kb on + strand, within RR42_RS18135 at 3925.443 kb on + strand, within RR42_RS18135 at 3925.465 kb on + strand, within RR42_RS18135 at 3925.465 kb on + strand, within RR42_RS18135 at 3925.466 kb on - strand, within RR42_RS18135 at 3925.466 kb on - strand, within RR42_RS18135 at 3925.925 kb on + strand at 3925.926 kb on - strand at 3925.926 kb on - strand at 3925.928 kb on - strand at 3925.928 kb on - strand at 3926.042 kb on + strand, within RR42_RS18140 at 3926.316 kb on + strand, within RR42_RS18140 at 3926.527 kb on - strand, within RR42_RS18145 at 3926.748 kb on + strand, within RR42_RS18145 at 3926.787 kb on - strand, within RR42_RS18145 at 3926.787 kb on - strand, within RR42_RS18145 at 3926.882 kb on + strand, within RR42_RS18145 at 3926.882 kb on + strand, within RR42_RS18145 at 3926.994 kb on + strand at 3926.994 kb on + strand at 3926.995 kb on - strand at 3926.995 kb on - strand at 3927.115 kb on + strand at 3927.116 kb on - strand at 3927.116 kb on - strand at 3927.116 kb on - strand at 3927.188 kb on - strand, within RR42_RS18150 at 3927.188 kb on - strand, within RR42_RS18150 at 3927.347 kb on - strand, within RR42_RS18150
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,924,980 - RR42_RS18135 0.10 -0.1 3,925,088 + RR42_RS18135 0.21 -1.7 3,925,213 + RR42_RS18135 0.33 +0.2 3,925,213 + RR42_RS18135 0.33 -1.1 3,925,443 + RR42_RS18135 0.56 +0.4 3,925,465 + RR42_RS18135 0.58 +0.2 3,925,465 + RR42_RS18135 0.58 -0.4 3,925,466 - RR42_RS18135 0.58 +0.3 3,925,466 - RR42_RS18135 0.58 -1.0 3,925,925 + +0.2 3,925,926 - +0.2 3,925,926 - -1.3 3,925,928 - +1.5 3,925,928 - +1.7 3,926,042 + RR42_RS18140 0.16 +2.7 3,926,316 + RR42_RS18140 0.69 +1.7 3,926,527 - RR42_RS18145 0.12 +0.1 3,926,748 + RR42_RS18145 0.60 -0.1 3,926,787 - RR42_RS18145 0.68 +1.1 3,926,787 - RR42_RS18145 0.68 +0.3 3,926,882 + RR42_RS18145 0.89 -0.7 3,926,882 + RR42_RS18145 0.89 -0.4 3,926,994 + -1.1 3,926,994 + +0.7 3,926,995 - +1.1 3,926,995 - +0.2 3,927,115 + -0.8 3,927,116 - +1.0 3,927,116 - -0.5 3,927,116 - +0.3 3,927,188 - RR42_RS18150 0.10 -2.4 3,927,188 - RR42_RS18150 0.10 -1.0 3,927,347 - RR42_RS18150 0.20 +0.1
Or see this region's nucleotide sequence