Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11655

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11650 and RR42_RS11655 are separated by 155 nucleotidesRR42_RS11655 and RR42_RS11660 are separated by 199 nucleotidesRR42_RS11660 and RR42_RS11665 are separated by 110 nucleotidesRR42_RS11665 and RR42_RS11670 are separated by 153 nucleotides RR42_RS11650: RR42_RS11650 - poly-beta-hydroxybutyrate polymerase, at 2,495,522 to 2,497,309 _RS11650 RR42_RS11655: RR42_RS11655 - heat-shock protein Hsp20, at 2,497,465 to 2,497,887 _RS11655 RR42_RS11660: RR42_RS11660 - hypothetical protein, at 2,498,087 to 2,498,269 _RS11660 RR42_RS11665: RR42_RS11665 - hypothetical protein, at 2,498,380 to 2,498,571 _RS11665 RR42_RS11670: RR42_RS11670 - thymidine phosphorylase, at 2,498,725 to 2,500,257 _RS11670 Position (kb) 2497 2498Strain fitness (log2 ratio) -2 -1 0 1at 2496.493 kb on + strand, within RR42_RS11650at 2496.493 kb on + strand, within RR42_RS11650at 2496.510 kb on - strand, within RR42_RS11650at 2496.695 kb on + strand, within RR42_RS11650at 2496.695 kb on + strand, within RR42_RS11650at 2496.776 kb on + strand, within RR42_RS11650at 2496.908 kb on + strand, within RR42_RS11650at 2496.909 kb on - strand, within RR42_RS11650at 2497.007 kb on + strand, within RR42_RS11650at 2497.142 kb on + strandat 2497.143 kb on - strandat 2497.143 kb on - strandat 2497.160 kb on + strandat 2497.293 kb on - strandat 2497.539 kb on - strand, within RR42_RS11655at 2497.719 kb on + strand, within RR42_RS11655at 2497.869 kb on - strandat 2498.168 kb on + strand, within RR42_RS11660at 2498.169 kb on - strand, within RR42_RS11660at 2498.231 kb on + strand, within RR42_RS11660at 2498.381 kb on + strandat 2498.382 kb on - strandat 2498.552 kb on + strandat 2498.552 kb on + strandat 2498.553 kb on - strandat 2498.731 kb on - strandat 2498.731 kb on - strandat 2498.788 kb on + strandat 2498.788 kb on + strandat 2498.806 kb on + strandat 2498.806 kb on + strandat 2498.806 kb on + strandat 2498.806 kb on + strandat 2498.807 kb on - strandat 2498.807 kb on - strandat 2498.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,496,493 + RR42_RS11650 0.54 -0.4
2,496,493 + RR42_RS11650 0.54 +0.5
2,496,510 - RR42_RS11650 0.55 +0.3
2,496,695 + RR42_RS11650 0.66 +0.0
2,496,695 + RR42_RS11650 0.66 -0.4
2,496,776 + RR42_RS11650 0.70 -0.6
2,496,908 + RR42_RS11650 0.78 -0.2
2,496,909 - RR42_RS11650 0.78 -1.4
2,497,007 + RR42_RS11650 0.83 +0.5
2,497,142 + +0.4
2,497,143 - +0.1
2,497,143 - -0.6
2,497,160 + +0.1
2,497,293 - +0.6
2,497,539 - RR42_RS11655 0.17 -1.3
2,497,719 + RR42_RS11655 0.60 +0.4
2,497,869 - -0.3
2,498,168 + RR42_RS11660 0.44 -0.2
2,498,169 - RR42_RS11660 0.45 +0.1
2,498,231 + RR42_RS11660 0.79 -0.0
2,498,381 + -2.0
2,498,382 - +0.0
2,498,552 + -0.7
2,498,552 + -1.2
2,498,553 - -0.1
2,498,731 - -0.7
2,498,731 - +0.8
2,498,788 + +1.6
2,498,788 + -0.1
2,498,806 + -0.2
2,498,806 + -0.3
2,498,806 + -1.1
2,498,806 + +0.0
2,498,807 - +1.6
2,498,807 - +0.6
2,498,807 - +0.1

Or see this region's nucleotide sequence