Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10540

Experiment: L-Tryptophan (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS10540 and RR42_RS10545 are separated by 54 nucleotides RR42_RS10540: RR42_RS10540 - acetyl-CoA acetyltransferase, at 2,252,737 to 2,253,921 _RS10540 RR42_RS10545: RR42_RS10545 - NADPH:quinone dehydrogenase, at 2,253,976 to 2,254,962 _RS10545 Position (kb) 2252 2253 2254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2251.882 kb on + strandat 2251.939 kb on + strandat 2251.966 kb on + strandat 2251.969 kb on + strandat 2251.969 kb on + strandat 2251.969 kb on + strandat 2251.970 kb on - strandat 2251.970 kb on - strandat 2251.974 kb on + strandat 2251.975 kb on - strandat 2252.202 kb on + strandat 2252.229 kb on + strandat 2252.230 kb on - strandat 2252.230 kb on - strandat 2252.273 kb on + strandat 2252.332 kb on + strandat 2252.333 kb on - strandat 2252.403 kb on + strandat 2252.404 kb on - strandat 2252.479 kb on + strandat 2252.557 kb on - strandat 2252.700 kb on - strandat 2252.723 kb on + strandat 2252.724 kb on - strandat 2253.548 kb on + strand, within RR42_RS10540at 2253.549 kb on - strand, within RR42_RS10540at 2253.549 kb on - strand, within RR42_RS10540at 2254.132 kb on + strand, within RR42_RS10545at 2254.133 kb on - strand, within RR42_RS10545at 2254.400 kb on + strand, within RR42_RS10545at 2254.401 kb on - strand, within RR42_RS10545at 2254.835 kb on + strand, within RR42_RS10545at 2254.850 kb on + strand, within RR42_RS10545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
remove
2,251,882 + -0.9
2,251,939 + -1.0
2,251,966 + -0.2
2,251,969 + +0.2
2,251,969 + -0.6
2,251,969 + -0.7
2,251,970 - -0.7
2,251,970 - -3.7
2,251,974 + -1.0
2,251,975 - -1.1
2,252,202 + -0.2
2,252,229 + -0.4
2,252,230 - +0.8
2,252,230 - +2.0
2,252,273 + -0.5
2,252,332 + -0.6
2,252,333 - +0.1
2,252,403 + +2.1
2,252,404 - +0.9
2,252,479 + -1.5
2,252,557 - +0.4
2,252,700 - -0.1
2,252,723 + +0.4
2,252,724 - +0.4
2,253,548 + RR42_RS10540 0.68 -0.3
2,253,549 - RR42_RS10540 0.69 -0.5
2,253,549 - RR42_RS10540 0.69 +1.5
2,254,132 + RR42_RS10545 0.16 -1.0
2,254,133 - RR42_RS10545 0.16 +0.1
2,254,400 + RR42_RS10545 0.43 -0.7
2,254,401 - RR42_RS10545 0.43 +0.6
2,254,835 + RR42_RS10545 0.87 -0.3
2,254,850 + RR42_RS10545 0.89 +0.8

Or see this region's nucleotide sequence