Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06965

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06960 and RR42_RS06965 are separated by 133 nucleotidesRR42_RS06965 and RR42_RS06970 are separated by 3 nucleotides RR42_RS06960: RR42_RS06960 - hypothetical protein, at 1,496,835 to 1,497,518 _RS06960 RR42_RS06965: RR42_RS06965 - hypothetical protein, at 1,497,652 to 1,497,945 _RS06965 RR42_RS06970: RR42_RS06970 - hypothetical protein, at 1,497,949 to 1,499,382 _RS06970 Position (kb) 1497 1498Strain fitness (log2 ratio) -2 -1 0 1 2at 1496.688 kb on + strandat 1496.834 kb on + strandat 1496.834 kb on + strandat 1496.933 kb on + strand, within RR42_RS06960at 1497.108 kb on + strand, within RR42_RS06960at 1497.108 kb on + strand, within RR42_RS06960at 1497.109 kb on - strand, within RR42_RS06960at 1497.109 kb on - strand, within RR42_RS06960at 1497.141 kb on - strand, within RR42_RS06960at 1497.166 kb on - strand, within RR42_RS06960at 1497.307 kb on - strand, within RR42_RS06960at 1497.307 kb on - strand, within RR42_RS06960at 1497.396 kb on + strand, within RR42_RS06960at 1497.397 kb on - strand, within RR42_RS06960at 1497.403 kb on + strand, within RR42_RS06960at 1497.433 kb on - strand, within RR42_RS06960at 1497.454 kb on - strandat 1497.495 kb on - strandat 1497.866 kb on - strand, within RR42_RS06965at 1497.866 kb on - strand, within RR42_RS06965at 1497.868 kb on + strand, within RR42_RS06965at 1497.952 kb on + strandat 1497.952 kb on + strandat 1497.952 kb on + strandat 1497.953 kb on - strandat 1497.953 kb on - strandat 1497.953 kb on - strandat 1497.953 kb on - strandat 1497.981 kb on - strandat 1498.000 kb on + strandat 1498.191 kb on + strand, within RR42_RS06970at 1498.191 kb on + strand, within RR42_RS06970at 1498.200 kb on - strand, within RR42_RS06970at 1498.254 kb on + strand, within RR42_RS06970at 1498.255 kb on - strand, within RR42_RS06970at 1498.393 kb on + strand, within RR42_RS06970at 1498.394 kb on - strand, within RR42_RS06970at 1498.394 kb on - strand, within RR42_RS06970at 1498.429 kb on + strand, within RR42_RS06970at 1498.429 kb on + strand, within RR42_RS06970at 1498.478 kb on - strand, within RR42_RS06970at 1498.659 kb on + strand, within RR42_RS06970at 1498.679 kb on - strand, within RR42_RS06970at 1498.728 kb on - strand, within RR42_RS06970at 1498.795 kb on + strand, within RR42_RS06970at 1498.813 kb on + strand, within RR42_RS06970at 1498.813 kb on + strand, within RR42_RS06970at 1498.813 kb on + strand, within RR42_RS06970at 1498.814 kb on - strand, within RR42_RS06970at 1498.814 kb on - strand, within RR42_RS06970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,496,688 + +0.3
1,496,834 + -0.5
1,496,834 + -0.3
1,496,933 + RR42_RS06960 0.14 -0.9
1,497,108 + RR42_RS06960 0.40 +0.4
1,497,108 + RR42_RS06960 0.40 +0.1
1,497,109 - RR42_RS06960 0.40 +1.0
1,497,109 - RR42_RS06960 0.40 +0.7
1,497,141 - RR42_RS06960 0.45 -0.9
1,497,166 - RR42_RS06960 0.48 +0.2
1,497,307 - RR42_RS06960 0.69 +0.0
1,497,307 - RR42_RS06960 0.69 -1.1
1,497,396 + RR42_RS06960 0.82 +0.1
1,497,397 - RR42_RS06960 0.82 +1.1
1,497,403 + RR42_RS06960 0.83 +0.2
1,497,433 - RR42_RS06960 0.87 -0.2
1,497,454 - -0.2
1,497,495 - -1.1
1,497,866 - RR42_RS06965 0.73 -0.6
1,497,866 - RR42_RS06965 0.73 -0.5
1,497,868 + RR42_RS06965 0.73 -0.9
1,497,952 + +0.4
1,497,952 + -1.4
1,497,952 + +0.5
1,497,953 - +0.7
1,497,953 - +0.3
1,497,953 - -0.6
1,497,953 - +0.4
1,497,981 - -0.2
1,498,000 + -0.3
1,498,191 + RR42_RS06970 0.17 +2.1
1,498,191 + RR42_RS06970 0.17 +0.1
1,498,200 - RR42_RS06970 0.18 -0.0
1,498,254 + RR42_RS06970 0.21 -1.0
1,498,255 - RR42_RS06970 0.21 -0.5
1,498,393 + RR42_RS06970 0.31 -0.9
1,498,394 - RR42_RS06970 0.31 -2.0
1,498,394 - RR42_RS06970 0.31 +0.3
1,498,429 + RR42_RS06970 0.33 +0.7
1,498,429 + RR42_RS06970 0.33 +1.4
1,498,478 - RR42_RS06970 0.37 +1.2
1,498,659 + RR42_RS06970 0.50 -1.3
1,498,679 - RR42_RS06970 0.51 +0.2
1,498,728 - RR42_RS06970 0.54 +0.6
1,498,795 + RR42_RS06970 0.59 -0.2
1,498,813 + RR42_RS06970 0.60 -0.3
1,498,813 + RR42_RS06970 0.60 -1.1
1,498,813 + RR42_RS06970 0.60 -0.9
1,498,814 - RR42_RS06970 0.60 -0.1
1,498,814 - RR42_RS06970 0.60 +0.3

Or see this region's nucleotide sequence