Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06690

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06675 and RR42_RS06680 are separated by 60 nucleotidesRR42_RS06680 and RR42_RS06685 are separated by 108 nucleotidesRR42_RS06685 and RR42_RS06690 overlap by 4 nucleotidesRR42_RS06690 and RR42_RS06695 overlap by 4 nucleotides RR42_RS06675: RR42_RS06675 - hypothetical protein, at 1,453,586 to 1,454,197 _RS06675 RR42_RS06680: RR42_RS06680 - hypothetical protein, at 1,454,258 to 1,454,866 _RS06680 RR42_RS06685: RR42_RS06685 - hypothetical protein, at 1,454,975 to 1,455,172 _RS06685 RR42_RS06690: RR42_RS06690 - hypothetical protein, at 1,455,169 to 1,455,624 _RS06690 RR42_RS06695: RR42_RS06695 - hypothetical protein, at 1,455,621 to 1,456,721 _RS06695 Position (kb) 1455 1456Strain fitness (log2 ratio) -2 -1 0 1at 1454.218 kb on - strandat 1454.221 kb on + strandat 1454.222 kb on - strandat 1454.222 kb on - strandat 1454.392 kb on - strand, within RR42_RS06680at 1454.467 kb on + strand, within RR42_RS06680at 1454.469 kb on + strand, within RR42_RS06680at 1454.469 kb on + strand, within RR42_RS06680at 1454.469 kb on + strand, within RR42_RS06680at 1454.469 kb on + strand, within RR42_RS06680at 1454.475 kb on + strand, within RR42_RS06680at 1454.553 kb on + strand, within RR42_RS06680at 1454.586 kb on + strand, within RR42_RS06680at 1454.587 kb on - strand, within RR42_RS06680at 1454.750 kb on - strand, within RR42_RS06680at 1454.776 kb on - strand, within RR42_RS06680at 1454.930 kb on + strandat 1454.930 kb on + strandat 1454.931 kb on - strandat 1455.309 kb on + strand, within RR42_RS06690at 1455.383 kb on + strand, within RR42_RS06690at 1455.384 kb on - strand, within RR42_RS06690at 1455.523 kb on + strand, within RR42_RS06690at 1455.575 kb on + strand, within RR42_RS06690at 1455.576 kb on - strand, within RR42_RS06690at 1455.576 kb on - strand, within RR42_RS06690at 1455.603 kb on - strandat 1455.603 kb on - strandat 1455.605 kb on + strandat 1455.655 kb on - strandat 1455.938 kb on - strand, within RR42_RS06695at 1455.938 kb on - strand, within RR42_RS06695at 1455.939 kb on + strand, within RR42_RS06695at 1455.939 kb on + strand, within RR42_RS06695at 1455.940 kb on - strand, within RR42_RS06695at 1456.010 kb on - strand, within RR42_RS06695at 1456.148 kb on - strand, within RR42_RS06695at 1456.165 kb on + strand, within RR42_RS06695at 1456.165 kb on + strand, within RR42_RS06695at 1456.166 kb on - strand, within RR42_RS06695at 1456.264 kb on + strand, within RR42_RS06695at 1456.312 kb on + strand, within RR42_RS06695at 1456.313 kb on - strand, within RR42_RS06695at 1456.342 kb on + strand, within RR42_RS06695at 1456.432 kb on - strand, within RR42_RS06695at 1456.452 kb on - strand, within RR42_RS06695at 1456.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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1,454,218 - +1.3
1,454,221 + -0.3
1,454,222 - +0.3
1,454,222 - -1.7
1,454,392 - RR42_RS06680 0.22 -0.3
1,454,467 + RR42_RS06680 0.34 +0.2
1,454,469 + RR42_RS06680 0.35 +1.4
1,454,469 + RR42_RS06680 0.35 -0.2
1,454,469 + RR42_RS06680 0.35 -0.2
1,454,469 + RR42_RS06680 0.35 +0.1
1,454,475 + RR42_RS06680 0.36 -0.1
1,454,553 + RR42_RS06680 0.48 -0.1
1,454,586 + RR42_RS06680 0.54 -0.8
1,454,587 - RR42_RS06680 0.54 -0.2
1,454,750 - RR42_RS06680 0.81 -0.2
1,454,776 - RR42_RS06680 0.85 -0.0
1,454,930 + -0.4
1,454,930 + +0.0
1,454,931 - -1.0
1,455,309 + RR42_RS06690 0.31 +0.4
1,455,383 + RR42_RS06690 0.47 +0.8
1,455,384 - RR42_RS06690 0.47 +1.1
1,455,523 + RR42_RS06690 0.78 +0.3
1,455,575 + RR42_RS06690 0.89 +0.8
1,455,576 - RR42_RS06690 0.89 -0.5
1,455,576 - RR42_RS06690 0.89 -1.0
1,455,603 - -0.6
1,455,603 - +0.3
1,455,605 + -0.3
1,455,655 - -0.1
1,455,938 - RR42_RS06695 0.29 -0.6
1,455,938 - RR42_RS06695 0.29 -0.2
1,455,939 + RR42_RS06695 0.29 +0.2
1,455,939 + RR42_RS06695 0.29 +0.2
1,455,940 - RR42_RS06695 0.29 +0.3
1,456,010 - RR42_RS06695 0.35 -0.1
1,456,148 - RR42_RS06695 0.48 -0.3
1,456,165 + RR42_RS06695 0.49 +0.6
1,456,165 + RR42_RS06695 0.49 +0.1
1,456,166 - RR42_RS06695 0.50 +0.9
1,456,264 + RR42_RS06695 0.58 -1.0
1,456,312 + RR42_RS06695 0.63 +0.2
1,456,313 - RR42_RS06695 0.63 +0.3
1,456,342 + RR42_RS06695 0.65 -0.1
1,456,432 - RR42_RS06695 0.74 -0.9
1,456,452 - RR42_RS06695 0.75 -1.1
1,456,619 - -2.0

Or see this region's nucleotide sequence