Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03790 and RR42_RS03795 are separated by 139 nucleotides RR42_RS03795 and RR42_RS03800 are separated by 22 nucleotides RR42_RS03800 and RR42_RS03805 are separated by 73 nucleotides
RR42_RS03790: RR42_RS03790 - molybdenum cofactor biosynthesis protein MoaA, at 837,226 to 837,480
_RS03790
RR42_RS03795: RR42_RS03795 - tyrosine protein phosphatase, at 837,620 to 838,336
_RS03795
RR42_RS03800: RR42_RS03800 - acetate kinase, at 838,359 to 839,585
_RS03800
RR42_RS03805: RR42_RS03805 - phosphate acetyltransferase, at 839,659 to 840,600
_RS03805
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.427 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.931 kb on + strand, within RR42_RS03795 at 837.932 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 838.010 kb on + strand, within RR42_RS03795 at 838.103 kb on + strand, within RR42_RS03795 at 838.104 kb on - strand, within RR42_RS03795 at 838.319 kb on + strand at 838.360 kb on + strand at 838.361 kb on - strand at 838.753 kb on + strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.754 kb on - strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.996 kb on + strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 838.997 kb on - strand, within RR42_RS03800 at 839.003 kb on - strand, within RR42_RS03800 at 839.047 kb on + strand, within RR42_RS03800 at 839.055 kb on - strand, within RR42_RS03800 at 839.221 kb on - strand, within RR42_RS03800 at 839.274 kb on + strand, within RR42_RS03800 at 839.275 kb on - strand, within RR42_RS03800 at 839.519 kb on - strand at 840.157 kb on - strand, within RR42_RS03805 at 840.578 kb on + strand at 840.579 kb on - strand at 840.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 837,427 + RR42_RS03790 0.79 +1.6 837,429 + RR42_RS03790 0.80 +0.5 837,429 + RR42_RS03790 0.80 +0.6 837,429 + RR42_RS03790 0.80 -0.6 837,429 + RR42_RS03790 0.80 -0.2 837,931 + RR42_RS03795 0.43 -0.8 837,932 + RR42_RS03795 0.44 +0.1 837,953 + RR42_RS03795 0.46 +0.8 837,953 + RR42_RS03795 0.46 -0.0 838,010 + RR42_RS03795 0.54 +1.6 838,103 + RR42_RS03795 0.67 -0.1 838,104 - RR42_RS03795 0.68 -1.3 838,319 + -0.3 838,360 + +0.1 838,361 - +0.0 838,753 + RR42_RS03800 0.32 -0.0 838,754 - RR42_RS03800 0.32 -0.6 838,754 - RR42_RS03800 0.32 -0.1 838,996 + RR42_RS03800 0.52 -1.4 838,996 + RR42_RS03800 0.52 -0.5 838,997 - RR42_RS03800 0.52 +0.6 838,997 - RR42_RS03800 0.52 +0.3 838,997 - RR42_RS03800 0.52 -2.5 839,003 - RR42_RS03800 0.52 +0.6 839,047 + RR42_RS03800 0.56 +0.2 839,055 - RR42_RS03800 0.57 -0.0 839,221 - RR42_RS03800 0.70 -2.7 839,274 + RR42_RS03800 0.75 -0.1 839,275 - RR42_RS03800 0.75 -0.6 839,519 - +2.0 840,157 - RR42_RS03805 0.53 +0.3 840,578 + -0.1 840,579 - -0.0 840,579 - -1.0
Or see this region's nucleotide sequence