Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01610 and RR42_RS01615 are separated by 461 nucleotides RR42_RS01615 and RR42_RS01620 are separated by 58 nucleotides RR42_RS01620 and RR42_RS01625 are separated by 236 nucleotides
RR42_RS01610: RR42_RS01610 - 3-hydroxybutyryl-CoA dehydrogenase, at 366,151 to 367,005
_RS01610
RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011
_RS01615
RR42_RS01620: RR42_RS01620 - Crp/Fnr family transcriptional regulator, at 369,070 to 369,738
_RS01620
RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945
_RS01625
Position (kb) 367
368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.758 kb on + strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.989 kb on - strand at 366.989 kb on - strand at 366.994 kb on + strand at 366.994 kb on + strand at 366.995 kb on - strand at 367.158 kb on + strand at 367.158 kb on + strand at 367.181 kb on - strand at 367.235 kb on - strand at 367.235 kb on - strand at 367.238 kb on - strand at 367.320 kb on + strand at 367.321 kb on - strand at 367.392 kb on - strand at 367.466 kb on + strand at 367.501 kb on - strand at 367.629 kb on - strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.798 kb on - strand, within RR42_RS01615 at 367.854 kb on + strand, within RR42_RS01615 at 367.874 kb on + strand, within RR42_RS01615 at 368.186 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.792 kb on + strand, within RR42_RS01615 at 368.847 kb on - strand, within RR42_RS01615 at 369.106 kb on + strand at 369.106 kb on + strand at 369.107 kb on - strand at 369.107 kb on - strand at 369.123 kb on - strand at 369.187 kb on + strand, within RR42_RS01620 at 369.188 kb on - strand, within RR42_RS01620 at 369.248 kb on + strand, within RR42_RS01620 at 369.464 kb on + strand, within RR42_RS01620 at 369.619 kb on - strand, within RR42_RS01620 at 369.630 kb on - strand, within RR42_RS01620 at 369.643 kb on - strand, within RR42_RS01620 at 369.676 kb on - strand at 369.812 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.909 kb on + strand at 369.909 kb on + strand at 369.911 kb on + strand at 369.912 kb on - strand at 369.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 366,758 + RR42_RS01610 0.71 +0.8 366,893 - RR42_RS01610 0.87 -0.1 366,893 - RR42_RS01610 0.87 -0.1 366,989 - +0.4 366,989 - +2.0 366,994 + +1.1 366,994 + +1.8 366,995 - -0.6 367,158 + +0.4 367,158 + +0.2 367,181 - +0.7 367,235 - -0.0 367,235 - +1.5 367,238 - +0.8 367,320 + -0.8 367,321 - +0.3 367,392 - +0.1 367,466 + +0.0 367,501 - +0.1 367,629 - RR42_RS01615 0.10 -0.4 367,797 + RR42_RS01615 0.21 +0.0 367,797 + RR42_RS01615 0.21 -1.9 367,797 + RR42_RS01615 0.21 -0.3 367,798 - RR42_RS01615 0.21 -0.9 367,854 + RR42_RS01615 0.25 +0.4 367,874 + RR42_RS01615 0.26 -0.6 368,186 + RR42_RS01615 0.47 +0.5 368,365 + RR42_RS01615 0.58 -1.1 368,365 + RR42_RS01615 0.58 -1.0 368,792 + RR42_RS01615 0.86 -0.6 368,847 - RR42_RS01615 0.89 -0.8 369,106 + -0.2 369,106 + -0.8 369,107 - -0.6 369,107 - -0.2 369,123 - +0.6 369,187 + RR42_RS01620 0.17 +0.5 369,188 - RR42_RS01620 0.18 -0.4 369,248 + RR42_RS01620 0.27 -0.8 369,464 + RR42_RS01620 0.59 -1.7 369,619 - RR42_RS01620 0.82 -0.4 369,630 - RR42_RS01620 0.84 -0.4 369,643 - RR42_RS01620 0.86 -0.1 369,676 - -0.3 369,812 + -0.5 369,817 + -3.2 369,817 + -0.0 369,817 + +1.8 369,817 + +0.8 369,817 + -0.8 369,909 + +0.1 369,909 + +1.1 369,911 + +1.6 369,912 - -0.3 369,912 - +0.6
Or see this region's nucleotide sequence