Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4997 and Psyr_4998 are separated by 156 nucleotides Psyr_4998 and Psyr_4999 are separated by 63 nucleotides Psyr_4999 and Psyr_5000 are separated by 376 nucleotides
Psyr_4997: Psyr_4997 - YD repeat protein, at 5,926,344 to 5,928,011
_4997
Psyr_4998: Psyr_4998 - hypothetical protein, at 5,928,168 to 5,928,878
_4998
Psyr_4999: Psyr_4999 - hypothetical protein, at 5,928,942 to 5,929,493
_4999
Psyr_5000: Psyr_5000 - conserved hypothetical protein, at 5,929,870 to 5,930,298
_5000
Position (kb) 5928
5929 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5927.335 kb on + strand, within Psyr_4997 at 5927.336 kb on - strand, within Psyr_4997 at 5927.392 kb on - strand, within Psyr_4997 at 5927.392 kb on - strand, within Psyr_4997 at 5927.716 kb on + strand, within Psyr_4997 at 5927.716 kb on + strand, within Psyr_4997 at 5927.716 kb on + strand, within Psyr_4997 at 5927.716 kb on + strand, within Psyr_4997 at 5927.723 kb on + strand, within Psyr_4997 at 5927.755 kb on - strand, within Psyr_4997 at 5927.898 kb on + strand at 5927.898 kb on + strand at 5927.939 kb on - strand at 5927.939 kb on - strand at 5927.952 kb on + strand at 5927.953 kb on - strand at 5927.955 kb on + strand at 5927.955 kb on + strand at 5927.955 kb on + strand at 5927.955 kb on + strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.956 kb on - strand at 5927.977 kb on + strand at 5927.990 kb on + strand at 5927.991 kb on - strand at 5928.062 kb on - strand at 5928.062 kb on - strand at 5928.084 kb on + strand at 5928.085 kb on - strand at 5928.091 kb on - strand at 5928.095 kb on - strand at 5928.099 kb on - strand at 5928.103 kb on + strand at 5928.161 kb on + strand at 5928.232 kb on + strand at 5928.233 kb on - strand at 5928.277 kb on + strand, within Psyr_4998 at 5928.298 kb on + strand, within Psyr_4998 at 5928.313 kb on + strand, within Psyr_4998 at 5928.316 kb on - strand, within Psyr_4998 at 5928.316 kb on - strand, within Psyr_4998 at 5928.398 kb on + strand, within Psyr_4998 at 5928.398 kb on + strand, within Psyr_4998 at 5928.411 kb on + strand, within Psyr_4998 at 5928.412 kb on - strand, within Psyr_4998 at 5928.412 kb on - strand, within Psyr_4998 at 5928.416 kb on + strand, within Psyr_4998 at 5928.417 kb on - strand, within Psyr_4998 at 5928.510 kb on + strand, within Psyr_4998 at 5928.511 kb on - strand, within Psyr_4998 at 5928.557 kb on + strand, within Psyr_4998 at 5928.558 kb on - strand, within Psyr_4998 at 5928.567 kb on + strand, within Psyr_4998 at 5928.567 kb on + strand, within Psyr_4998 at 5928.568 kb on - strand, within Psyr_4998 at 5928.568 kb on - strand, within Psyr_4998 at 5928.570 kb on - strand, within Psyr_4998 at 5928.570 kb on - strand, within Psyr_4998 at 5928.583 kb on - strand, within Psyr_4998 at 5928.661 kb on + strand, within Psyr_4998 at 5928.661 kb on + strand, within Psyr_4998 at 5928.662 kb on - strand, within Psyr_4998 at 5928.683 kb on + strand, within Psyr_4998 at 5928.787 kb on - strand, within Psyr_4998 at 5928.787 kb on - strand, within Psyr_4998 at 5928.787 kb on - strand, within Psyr_4998 at 5928.798 kb on + strand, within Psyr_4998 at 5928.862 kb on + strand at 5928.862 kb on + strand at 5928.983 kb on + strand at 5928.983 kb on + strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.984 kb on - strand at 5928.994 kb on - strand at 5929.026 kb on + strand, within Psyr_4999 at 5929.063 kb on + strand, within Psyr_4999 at 5929.063 kb on + strand, within Psyr_4999 at 5929.064 kb on - strand, within Psyr_4999 at 5929.064 kb on - strand, within Psyr_4999 at 5929.104 kb on + strand, within Psyr_4999 at 5929.104 kb on + strand, within Psyr_4999 at 5929.105 kb on - strand, within Psyr_4999 at 5929.159 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.305 kb on + strand, within Psyr_4999 at 5929.306 kb on - strand, within Psyr_4999 at 5929.391 kb on + strand, within Psyr_4999 at 5929.491 kb on + strand at 5929.711 kb on - strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.712 kb on + strand at 5929.713 kb on - strand at 5929.713 kb on - strand at 5929.754 kb on + strand at 5929.754 kb on + strand at 5929.757 kb on + strand at 5929.757 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.777 kb on + strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.778 kb on - strand at 5929.794 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.863 kb on + strand at 5929.864 kb on - strand at 5929.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,927,335 + Psyr_4997 0.59 -1.2 5,927,336 - Psyr_4997 0.59 -1.3 5,927,392 - Psyr_4997 0.63 -0.9 5,927,392 - Psyr_4997 0.63 +0.4 5,927,716 + Psyr_4997 0.82 -2.4 5,927,716 + Psyr_4997 0.82 +1.6 5,927,716 + Psyr_4997 0.82 +1.6 5,927,716 + Psyr_4997 0.82 +2.9 5,927,723 + Psyr_4997 0.83 -1.3 5,927,755 - Psyr_4997 0.85 -0.2 5,927,898 + -1.6 5,927,898 + -3.4 5,927,939 - -2.2 5,927,939 - +4.1 5,927,952 + -2.0 5,927,953 - -1.5 5,927,955 + -3.4 5,927,955 + -1.3 5,927,955 + -1.6 5,927,955 + -1.3 5,927,956 - -0.7 5,927,956 - -0.6 5,927,956 - -1.9 5,927,956 - -1.3 5,927,956 - -1.3 5,927,956 - +1.6 5,927,956 - -0.5 5,927,977 + +2.6 5,927,990 + -2.1 5,927,991 - +4.0 5,928,062 - +3.1 5,928,062 - -0.6 5,928,084 + +1.6 5,928,085 - +0.2 5,928,091 - -0.3 5,928,095 - +2.4 5,928,099 - -0.7 5,928,103 + -1.2 5,928,161 + +0.1 5,928,232 + +0.1 5,928,233 - +1.1 5,928,277 + Psyr_4998 0.15 -1.0 5,928,298 + Psyr_4998 0.18 -2.7 5,928,313 + Psyr_4998 0.20 -0.9 5,928,316 - Psyr_4998 0.21 -0.3 5,928,316 - Psyr_4998 0.21 -0.6 5,928,398 + Psyr_4998 0.32 -1.4 5,928,398 + Psyr_4998 0.32 +3.1 5,928,411 + Psyr_4998 0.34 -2.8 5,928,412 - Psyr_4998 0.34 +3.2 5,928,412 - Psyr_4998 0.34 -3.4 5,928,416 + Psyr_4998 0.35 -1.0 5,928,417 - Psyr_4998 0.35 +0.2 5,928,510 + Psyr_4998 0.48 +1.9 5,928,511 - Psyr_4998 0.48 +2.1 5,928,557 + Psyr_4998 0.55 -0.6 5,928,558 - Psyr_4998 0.55 -2.3 5,928,567 + Psyr_4998 0.56 -1.2 5,928,567 + Psyr_4998 0.56 -1.6 5,928,568 - Psyr_4998 0.56 -4.3 5,928,568 - Psyr_4998 0.56 -3.8 5,928,570 - Psyr_4998 0.57 +0.1 5,928,570 - Psyr_4998 0.57 +0.1 5,928,583 - Psyr_4998 0.58 -4.1 5,928,661 + Psyr_4998 0.69 -2.0 5,928,661 + Psyr_4998 0.69 -2.4 5,928,662 - Psyr_4998 0.69 +2.1 5,928,683 + Psyr_4998 0.72 -1.5 5,928,787 - Psyr_4998 0.87 -5.0 5,928,787 - Psyr_4998 0.87 +1.1 5,928,787 - Psyr_4998 0.87 +0.1 5,928,798 + Psyr_4998 0.89 +3.2 5,928,862 + -2.1 5,928,862 + -3.1 5,928,983 + +3.2 5,928,983 + -1.7 5,928,984 - +2.9 5,928,984 - -2.4 5,928,984 - -1.0 5,928,984 - +2.4 5,928,994 - -1.7 5,929,026 + Psyr_4999 0.15 +2.6 5,929,063 + Psyr_4999 0.22 -0.4 5,929,063 + Psyr_4999 0.22 -0.1 5,929,064 - Psyr_4999 0.22 +1.6 5,929,064 - Psyr_4999 0.22 +1.6 5,929,104 + Psyr_4999 0.29 +0.3 5,929,104 + Psyr_4999 0.29 -1.3 5,929,105 - Psyr_4999 0.30 -2.2 5,929,159 + Psyr_4999 0.39 -0.8 5,929,305 + Psyr_4999 0.66 -0.7 5,929,305 + Psyr_4999 0.66 +1.3 5,929,305 + Psyr_4999 0.66 -2.9 5,929,305 + Psyr_4999 0.66 +1.1 5,929,305 + Psyr_4999 0.66 -5.0 5,929,306 - Psyr_4999 0.66 +0.1 5,929,391 + Psyr_4999 0.81 -0.1 5,929,491 + +0.1 5,929,711 - +3.8 5,929,712 + -1.3 5,929,712 + -3.5 5,929,712 + -1.9 5,929,712 + +2.4 5,929,712 + -1.2 5,929,713 - -0.3 5,929,713 - -0.1 5,929,754 + +0.1 5,929,754 + +0.1 5,929,757 + +3.9 5,929,757 + -1.9 5,929,777 + -0.0 5,929,777 + +0.2 5,929,777 + +0.2 5,929,777 + -2.6 5,929,778 - -0.4 5,929,778 - -0.4 5,929,778 - -1.8 5,929,778 - -0.0 5,929,778 - +3.4 5,929,778 - -0.3 5,929,794 + -0.9 5,929,863 + -0.3 5,929,863 + -1.0 5,929,863 + -2.3 5,929,863 + +3.6 5,929,863 + +2.1 5,929,864 - +0.1 5,929,864 - +5.1
Or see this region's nucleotide sequence