Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4992 and Psyr_4993 are separated by 9 nucleotides Psyr_4993 and Psyr_4994 are separated by 213 nucleotides Psyr_4994 and Psyr_4995 are separated by 30 nucleotides
Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126
_4992
Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936
_4993
Psyr_4994: Psyr_4994 - rhs-related protein, at 5,924,150 to 5,924,563
_4994
Psyr_4995: Psyr_4995 - RHS protein, at 5,924,594 to 5,925,109
_4995
Position (kb) 5923
5924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5922.203 kb on + strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.333 kb on - strand, within Psyr_4992 at 5922.578 kb on + strand, within Psyr_4992 at 5922.578 kb on + strand, within Psyr_4992 at 5922.589 kb on + strand, within Psyr_4992 at 5922.590 kb on - strand, within Psyr_4992 at 5922.594 kb on - strand, within Psyr_4992 at 5922.594 kb on - strand, within Psyr_4992 at 5922.619 kb on + strand, within Psyr_4992 at 5922.660 kb on + strand, within Psyr_4992 at 5922.660 kb on + strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.851 kb on - strand, within Psyr_4992 at 5922.880 kb on + strand, within Psyr_4992 at 5922.880 kb on + strand, within Psyr_4992 at 5922.886 kb on + strand, within Psyr_4992 at 5922.887 kb on - strand, within Psyr_4992 at 5922.928 kb on + strand, within Psyr_4992 at 5922.928 kb on + strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.929 kb on - strand, within Psyr_4992 at 5922.930 kb on + strand, within Psyr_4992 at 5922.930 kb on + strand, within Psyr_4992 at 5922.933 kb on + strand, within Psyr_4992 at 5922.934 kb on - strand, within Psyr_4992 at 5922.968 kb on - strand, within Psyr_4992 at 5922.976 kb on + strand, within Psyr_4992 at 5923.012 kb on - strand at 5923.038 kb on - strand at 5923.238 kb on - strand, within Psyr_4993 at 5923.239 kb on + strand, within Psyr_4993 at 5923.240 kb on - strand, within Psyr_4993 at 5923.240 kb on - strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.326 kb on + strand, within Psyr_4993 at 5923.327 kb on - strand, within Psyr_4993 at 5923.327 kb on - strand, within Psyr_4993 at 5923.336 kb on + strand, within Psyr_4993 at 5923.337 kb on - strand, within Psyr_4993 at 5923.388 kb on + strand, within Psyr_4993 at 5923.389 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.509 kb on - strand, within Psyr_4993 at 5923.550 kb on + strand, within Psyr_4993 at 5923.551 kb on - strand, within Psyr_4993 at 5923.570 kb on + strand, within Psyr_4993 at 5923.620 kb on + strand, within Psyr_4993 at 5923.655 kb on - strand, within Psyr_4993 at 5923.747 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.844 kb on + strand, within Psyr_4993 at 5923.871 kb on + strand at 5923.953 kb on + strand at 5923.991 kb on + strand at 5924.008 kb on - strand at 5924.437 kb on + strand, within Psyr_4994 at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.848 kb on + strand, within Psyr_4995
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,922,203 + Psyr_4992 0.32 +0.8 5,922,329 - Psyr_4992 0.41 +1.1 5,922,329 - Psyr_4992 0.41 +2.1 5,922,329 - Psyr_4992 0.41 +4.1 5,922,329 - Psyr_4992 0.41 +1.4 5,922,329 - Psyr_4992 0.41 +3.1 5,922,333 - Psyr_4992 0.41 +0.5 5,922,333 - Psyr_4992 0.41 -1.4 5,922,333 - Psyr_4992 0.41 +3.1 5,922,333 - Psyr_4992 0.41 -0.7 5,922,333 - Psyr_4992 0.41 -1.1 5,922,578 + Psyr_4992 0.60 -1.4 5,922,578 + Psyr_4992 0.60 -0.6 5,922,589 + Psyr_4992 0.60 +3.4 5,922,590 - Psyr_4992 0.60 -4.3 5,922,594 - Psyr_4992 0.61 -4.3 5,922,594 - Psyr_4992 0.61 -3.9 5,922,619 + Psyr_4992 0.63 +0.2 5,922,660 + Psyr_4992 0.66 -0.9 5,922,660 + Psyr_4992 0.66 -1.8 5,922,851 - Psyr_4992 0.80 +3.4 5,922,851 - Psyr_4992 0.80 -2.5 5,922,851 - Psyr_4992 0.80 -5.1 5,922,880 + Psyr_4992 0.82 -3.1 5,922,880 + Psyr_4992 0.82 -1.8 5,922,886 + Psyr_4992 0.82 +0.1 5,922,887 - Psyr_4992 0.82 +0.3 5,922,928 + Psyr_4992 0.85 +0.1 5,922,928 + Psyr_4992 0.85 -1.2 5,922,929 - Psyr_4992 0.85 -2.0 5,922,929 - Psyr_4992 0.85 +0.5 5,922,929 - Psyr_4992 0.85 -2.4 5,922,930 + Psyr_4992 0.85 +1.1 5,922,930 + Psyr_4992 0.85 -2.0 5,922,933 + Psyr_4992 0.86 -2.8 5,922,934 - Psyr_4992 0.86 +1.1 5,922,968 - Psyr_4992 0.88 -0.2 5,922,976 + Psyr_4992 0.89 -3.2 5,923,012 - +1.1 5,923,038 - -3.3 5,923,238 - Psyr_4993 0.13 +0.1 5,923,239 + Psyr_4993 0.13 -3.7 5,923,240 - Psyr_4993 0.13 +0.1 5,923,240 - Psyr_4993 0.13 +2.1 5,923,326 + Psyr_4993 0.24 +0.1 5,923,326 + Psyr_4993 0.24 +1.2 5,923,326 + Psyr_4993 0.24 +3.2 5,923,326 + Psyr_4993 0.24 -2.1 5,923,326 + Psyr_4993 0.24 -3.1 5,923,327 - Psyr_4993 0.24 -1.4 5,923,327 - Psyr_4993 0.24 +0.4 5,923,336 + Psyr_4993 0.25 -2.7 5,923,337 - Psyr_4993 0.25 -2.3 5,923,388 + Psyr_4993 0.31 -4.6 5,923,389 - Psyr_4993 0.32 +3.5 5,923,509 - Psyr_4993 0.47 -3.6 5,923,509 - Psyr_4993 0.47 -2.6 5,923,509 - Psyr_4993 0.47 -5.2 5,923,550 + Psyr_4993 0.52 +2.4 5,923,551 - Psyr_4993 0.52 -2.6 5,923,570 + Psyr_4993 0.54 -2.9 5,923,620 + Psyr_4993 0.60 -4.9 5,923,655 - Psyr_4993 0.65 -3.8 5,923,747 + Psyr_4993 0.76 +0.1 5,923,749 + Psyr_4993 0.77 +0.1 5,923,749 + Psyr_4993 0.77 +1.6 5,923,749 + Psyr_4993 0.77 -1.2 5,923,749 + Psyr_4993 0.77 -3.5 5,923,749 + Psyr_4993 0.77 -1.4 5,923,750 - Psyr_4993 0.77 -2.0 5,923,750 - Psyr_4993 0.77 -2.2 5,923,844 + Psyr_4993 0.88 +1.1 5,923,871 + -1.7 5,923,953 + -0.1 5,923,991 + -2.0 5,924,008 - -4.1 5,924,437 + Psyr_4994 0.69 -3.7 5,924,633 + -2.4 5,924,633 + +0.3 5,924,633 + +0.3 5,924,633 + -1.0 5,924,633 + -2.0 5,924,848 + Psyr_4995 0.49 -0.3
Or see this region's nucleotide sequence