Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4993

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4992 and Psyr_4993 are separated by 9 nucleotidesPsyr_4993 and Psyr_4994 are separated by 213 nucleotidesPsyr_4994 and Psyr_4995 are separated by 30 nucleotides Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126 _4992 Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936 _4993 Psyr_4994: Psyr_4994 - rhs-related protein, at 5,924,150 to 5,924,563 _4994 Psyr_4995: Psyr_4995 - RHS protein, at 5,924,594 to 5,925,109 _4995 Position (kb) 5923 5924Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 5922.203 kb on + strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.333 kb on - strand, within Psyr_4992at 5922.578 kb on + strand, within Psyr_4992at 5922.578 kb on + strand, within Psyr_4992at 5922.589 kb on + strand, within Psyr_4992at 5922.590 kb on - strand, within Psyr_4992at 5922.594 kb on - strand, within Psyr_4992at 5922.594 kb on - strand, within Psyr_4992at 5922.619 kb on + strand, within Psyr_4992at 5922.660 kb on + strand, within Psyr_4992at 5922.660 kb on + strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.851 kb on - strand, within Psyr_4992at 5922.880 kb on + strand, within Psyr_4992at 5922.880 kb on + strand, within Psyr_4992at 5922.886 kb on + strand, within Psyr_4992at 5922.887 kb on - strand, within Psyr_4992at 5922.928 kb on + strand, within Psyr_4992at 5922.928 kb on + strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.929 kb on - strand, within Psyr_4992at 5922.930 kb on + strand, within Psyr_4992at 5922.930 kb on + strand, within Psyr_4992at 5922.933 kb on + strand, within Psyr_4992at 5922.934 kb on - strand, within Psyr_4992at 5922.968 kb on - strand, within Psyr_4992at 5922.976 kb on + strand, within Psyr_4992at 5923.012 kb on - strandat 5923.038 kb on - strandat 5923.238 kb on - strand, within Psyr_4993at 5923.239 kb on + strand, within Psyr_4993at 5923.240 kb on - strand, within Psyr_4993at 5923.240 kb on - strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.326 kb on + strand, within Psyr_4993at 5923.327 kb on - strand, within Psyr_4993at 5923.327 kb on - strand, within Psyr_4993at 5923.336 kb on + strand, within Psyr_4993at 5923.337 kb on - strand, within Psyr_4993at 5923.388 kb on + strand, within Psyr_4993at 5923.389 kb on - strand, within Psyr_4993at 5923.509 kb on - strand, within Psyr_4993at 5923.509 kb on - strand, within Psyr_4993at 5923.509 kb on - strand, within Psyr_4993at 5923.550 kb on + strand, within Psyr_4993at 5923.551 kb on - strand, within Psyr_4993at 5923.570 kb on + strand, within Psyr_4993at 5923.620 kb on + strand, within Psyr_4993at 5923.655 kb on - strand, within Psyr_4993at 5923.747 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.749 kb on + strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.750 kb on - strand, within Psyr_4993at 5923.844 kb on + strand, within Psyr_4993at 5923.871 kb on + strandat 5923.953 kb on + strandat 5923.991 kb on + strandat 5924.008 kb on - strandat 5924.437 kb on + strand, within Psyr_4994at 5924.633 kb on + strandat 5924.633 kb on + strandat 5924.633 kb on + strandat 5924.633 kb on + strandat 5924.633 kb on + strandat 5924.848 kb on + strand, within Psyr_4995

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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5,922,203 + Psyr_4992 0.32 +0.8
5,922,329 - Psyr_4992 0.41 +1.1
5,922,329 - Psyr_4992 0.41 +2.1
5,922,329 - Psyr_4992 0.41 +4.1
5,922,329 - Psyr_4992 0.41 +1.4
5,922,329 - Psyr_4992 0.41 +3.1
5,922,333 - Psyr_4992 0.41 +0.5
5,922,333 - Psyr_4992 0.41 -1.4
5,922,333 - Psyr_4992 0.41 +3.1
5,922,333 - Psyr_4992 0.41 -0.7
5,922,333 - Psyr_4992 0.41 -1.1
5,922,578 + Psyr_4992 0.60 -1.4
5,922,578 + Psyr_4992 0.60 -0.6
5,922,589 + Psyr_4992 0.60 +3.4
5,922,590 - Psyr_4992 0.60 -4.3
5,922,594 - Psyr_4992 0.61 -4.3
5,922,594 - Psyr_4992 0.61 -3.9
5,922,619 + Psyr_4992 0.63 +0.2
5,922,660 + Psyr_4992 0.66 -0.9
5,922,660 + Psyr_4992 0.66 -1.8
5,922,851 - Psyr_4992 0.80 +3.4
5,922,851 - Psyr_4992 0.80 -2.5
5,922,851 - Psyr_4992 0.80 -5.1
5,922,880 + Psyr_4992 0.82 -3.1
5,922,880 + Psyr_4992 0.82 -1.8
5,922,886 + Psyr_4992 0.82 +0.1
5,922,887 - Psyr_4992 0.82 +0.3
5,922,928 + Psyr_4992 0.85 +0.1
5,922,928 + Psyr_4992 0.85 -1.2
5,922,929 - Psyr_4992 0.85 -2.0
5,922,929 - Psyr_4992 0.85 +0.5
5,922,929 - Psyr_4992 0.85 -2.4
5,922,930 + Psyr_4992 0.85 +1.1
5,922,930 + Psyr_4992 0.85 -2.0
5,922,933 + Psyr_4992 0.86 -2.8
5,922,934 - Psyr_4992 0.86 +1.1
5,922,968 - Psyr_4992 0.88 -0.2
5,922,976 + Psyr_4992 0.89 -3.2
5,923,012 - +1.1
5,923,038 - -3.3
5,923,238 - Psyr_4993 0.13 +0.1
5,923,239 + Psyr_4993 0.13 -3.7
5,923,240 - Psyr_4993 0.13 +0.1
5,923,240 - Psyr_4993 0.13 +2.1
5,923,326 + Psyr_4993 0.24 +0.1
5,923,326 + Psyr_4993 0.24 +1.2
5,923,326 + Psyr_4993 0.24 +3.2
5,923,326 + Psyr_4993 0.24 -2.1
5,923,326 + Psyr_4993 0.24 -3.1
5,923,327 - Psyr_4993 0.24 -1.4
5,923,327 - Psyr_4993 0.24 +0.4
5,923,336 + Psyr_4993 0.25 -2.7
5,923,337 - Psyr_4993 0.25 -2.3
5,923,388 + Psyr_4993 0.31 -4.6
5,923,389 - Psyr_4993 0.32 +3.5
5,923,509 - Psyr_4993 0.47 -3.6
5,923,509 - Psyr_4993 0.47 -2.6
5,923,509 - Psyr_4993 0.47 -5.2
5,923,550 + Psyr_4993 0.52 +2.4
5,923,551 - Psyr_4993 0.52 -2.6
5,923,570 + Psyr_4993 0.54 -2.9
5,923,620 + Psyr_4993 0.60 -4.9
5,923,655 - Psyr_4993 0.65 -3.8
5,923,747 + Psyr_4993 0.76 +0.1
5,923,749 + Psyr_4993 0.77 +0.1
5,923,749 + Psyr_4993 0.77 +1.6
5,923,749 + Psyr_4993 0.77 -1.2
5,923,749 + Psyr_4993 0.77 -3.5
5,923,749 + Psyr_4993 0.77 -1.4
5,923,750 - Psyr_4993 0.77 -2.0
5,923,750 - Psyr_4993 0.77 -2.2
5,923,844 + Psyr_4993 0.88 +1.1
5,923,871 + -1.7
5,923,953 + -0.1
5,923,991 + -2.0
5,924,008 - -4.1
5,924,437 + Psyr_4994 0.69 -3.7
5,924,633 + -2.4
5,924,633 + +0.3
5,924,633 + +0.3
5,924,633 + -1.0
5,924,633 + -2.0
5,924,848 + Psyr_4995 0.49 -0.3

Or see this region's nucleotide sequence