Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4976 and Psyr_4977 are separated by 575 nucleotides Psyr_4977 and Psyr_4978 are separated by 153 nucleotides Psyr_4978 and Psyr_4979 are separated by 168 nucleotides
Psyr_4976: Psyr_4976 - conserved hypothetical protein, at 5,902,118 to 5,902,672
_4976
Psyr_4977: Psyr_4977 - ADP-ribosylglycohydrolase, at 5,903,248 to 5,904,258
_4977
Psyr_4978: Psyr_4978 - hypothetical protein, at 5,904,412 to 5,904,711
_4978
Psyr_4979: Psyr_4979 - hypothetical protein, at 5,904,880 to 5,905,437
_4979
Position (kb) 5903
5904
5905 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5902.353 kb on + strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.562 kb on + strand, within Psyr_4976 at 5902.563 kb on - strand, within Psyr_4976 at 5902.575 kb on + strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.644 kb on + strand at 5902.644 kb on + strand at 5902.644 kb on + strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.698 kb on - strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.750 kb on + strand at 5902.751 kb on - strand at 5902.752 kb on + strand at 5902.752 kb on + strand at 5902.752 kb on + strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.763 kb on + strand at 5902.763 kb on + strand at 5902.764 kb on - strand at 5902.764 kb on - strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.826 kb on + strand at 5902.826 kb on + strand at 5902.868 kb on + strand at 5902.868 kb on + strand at 5902.868 kb on + strand at 5902.882 kb on + strand at 5902.882 kb on + strand at 5902.986 kb on + strand at 5903.023 kb on + strand at 5903.024 kb on - strand at 5903.062 kb on + strand at 5903.063 kb on - strand at 5903.063 kb on - strand at 5903.063 kb on - strand at 5903.103 kb on + strand at 5903.104 kb on - strand at 5903.104 kb on - strand at 5903.107 kb on + strand at 5903.107 kb on + strand at 5903.108 kb on - strand at 5903.142 kb on - strand at 5903.183 kb on + strand at 5903.261 kb on + strand at 5903.262 kb on - strand at 5903.266 kb on - strand at 5903.456 kb on - strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.461 kb on - strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.526 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.674 kb on + strand, within Psyr_4977 at 5903.675 kb on - strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.689 kb on + strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.690 kb on - strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.706 kb on + strand, within Psyr_4977 at 5903.707 kb on - strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.770 kb on + strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.792 kb on - strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.814 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.931 kb on + strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.945 kb on - strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.990 kb on + strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5903.991 kb on - strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.051 kb on + strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.052 kb on - strand, within Psyr_4977 at 5904.118 kb on - strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.133 kb on + strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.134 kb on - strand, within Psyr_4977 at 5904.192 kb on + strand at 5904.226 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.258 kb on + strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.259 kb on - strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.260 kb on + strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.261 kb on - strand at 5904.267 kb on + strand at 5904.267 kb on + strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.268 kb on - strand at 5904.311 kb on + strand at 5904.378 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.393 kb on + strand at 5904.394 kb on - strand at 5904.394 kb on - strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.430 kb on + strand at 5904.431 kb on - strand at 5904.453 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.587 kb on + strand, within Psyr_4978 at 5904.588 kb on - strand, within Psyr_4978 at 5904.590 kb on + strand, within Psyr_4978 at 5904.591 kb on - strand, within Psyr_4978 at 5904.723 kb on - strand at 5904.813 kb on - strand at 5904.828 kb on + strand at 5904.875 kb on - strand at 5904.892 kb on + strand at 5904.900 kb on + strand at 5904.900 kb on + strand at 5904.906 kb on - strand at 5904.945 kb on + strand, within Psyr_4979 at 5904.995 kb on - strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.017 kb on + strand, within Psyr_4979 at 5905.038 kb on + strand, within Psyr_4979 at 5905.103 kb on - strand, within Psyr_4979 at 5905.207 kb on + strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.208 kb on - strand, within Psyr_4979 at 5905.239 kb on + strand, within Psyr_4979 at 5905.240 kb on - strand, within Psyr_4979
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,902,353 + Psyr_4976 0.42 -2.2 5,902,354 - Psyr_4976 0.43 +1.6 5,902,354 - Psyr_4976 0.43 -1.3 5,902,354 - Psyr_4976 0.43 -1.6 5,902,562 + Psyr_4976 0.80 -3.0 5,902,563 - Psyr_4976 0.80 -1.8 5,902,575 + Psyr_4976 0.82 +0.6 5,902,576 - Psyr_4976 0.83 +0.5 5,902,576 - Psyr_4976 0.83 +1.4 5,902,576 - Psyr_4976 0.83 +3.2 5,902,576 - Psyr_4976 0.83 -1.2 5,902,576 - Psyr_4976 0.83 -3.2 5,902,576 - Psyr_4976 0.83 -1.0 5,902,576 - Psyr_4976 0.83 -0.5 5,902,644 + -2.3 5,902,644 + -1.2 5,902,644 + -3.1 5,902,645 - -5.4 5,902,645 - -1.1 5,902,645 - -1.7 5,902,645 - +3.9 5,902,698 - +1.1 5,902,699 + -1.1 5,902,699 + -0.9 5,902,699 + -0.4 5,902,699 + -3.4 5,902,699 + +0.8 5,902,699 + -0.3 5,902,699 + -2.3 5,902,699 + -5.0 5,902,699 + -2.3 5,902,700 - -4.3 5,902,700 - +0.1 5,902,700 - -2.0 5,902,700 - -2.0 5,902,700 - -3.1 5,902,700 - -0.7 5,902,700 - -1.5 5,902,750 + -5.1 5,902,751 - -3.7 5,902,752 + -2.3 5,902,752 + -4.1 5,902,752 + -2.5 5,902,753 - +0.1 5,902,753 - +2.1 5,902,753 - -2.5 5,902,753 - +2.4 5,902,763 + -1.3 5,902,763 + +2.4 5,902,764 - +3.8 5,902,764 - -1.1 5,902,775 + -3.0 5,902,775 + -4.2 5,902,775 + -1.8 5,902,775 + +0.1 5,902,775 + -2.0 5,902,776 - +0.1 5,902,776 - -1.1 5,902,776 - +3.4 5,902,776 - +2.1 5,902,776 - -0.2 5,902,776 - -0.7 5,902,776 - +3.1 5,902,776 - +2.9 5,902,777 + -2.8 5,902,777 + -1.8 5,902,777 + -0.9 5,902,777 + -2.6 5,902,777 + +0.1 5,902,777 + -2.1 5,902,777 + +0.5 5,902,777 + -3.5 5,902,777 + -0.5 5,902,777 + +1.1 5,902,778 - -1.1 5,902,778 - -1.7 5,902,778 - -1.1 5,902,778 - +3.1 5,902,778 - -3.6 5,902,778 - -2.2 5,902,778 - +0.1 5,902,778 - -1.4 5,902,778 - +0.2 5,902,778 - +0.4 5,902,778 - -1.8 5,902,778 - +1.4 5,902,826 + +0.1 5,902,826 + +2.9 5,902,868 + -2.6 5,902,868 + -1.5 5,902,868 + +2.1 5,902,882 + -1.2 5,902,882 + -2.8 5,902,986 + -3.1 5,903,023 + +1.1 5,903,024 - -2.9 5,903,062 + -3.4 5,903,063 - +2.1 5,903,063 - +0.8 5,903,063 - +3.1 5,903,103 + +0.1 5,903,104 - -3.2 5,903,104 - -1.6 5,903,107 + -2.2 5,903,107 + -4.1 5,903,108 - +1.6 5,903,142 - -1.1 5,903,183 + -3.1 5,903,261 + +1.6 5,903,262 - -1.4 5,903,266 - -0.8 5,903,456 - Psyr_4977 0.21 +0.1 5,903,460 + Psyr_4977 0.21 -1.1 5,903,460 + Psyr_4977 0.21 +1.6 5,903,460 + Psyr_4977 0.21 +1.2 5,903,460 + Psyr_4977 0.21 +3.4 5,903,460 + Psyr_4977 0.21 -0.4 5,903,461 - Psyr_4977 0.21 -0.7 5,903,525 + Psyr_4977 0.27 -0.9 5,903,525 + Psyr_4977 0.27 -2.9 5,903,525 + Psyr_4977 0.27 +0.1 5,903,526 - Psyr_4977 0.27 -0.5 5,903,654 - Psyr_4977 0.40 +3.1 5,903,654 - Psyr_4977 0.40 -3.4 5,903,654 - Psyr_4977 0.40 -2.1 5,903,654 - Psyr_4977 0.40 +0.2 5,903,674 + Psyr_4977 0.42 -3.3 5,903,675 - Psyr_4977 0.42 -3.9 5,903,689 + Psyr_4977 0.44 +0.5 5,903,689 + Psyr_4977 0.44 -3.5 5,903,690 - Psyr_4977 0.44 -1.8 5,903,690 - Psyr_4977 0.44 -2.5 5,903,706 + Psyr_4977 0.45 -1.9 5,903,706 + Psyr_4977 0.45 +0.1 5,903,707 - Psyr_4977 0.45 -2.4 5,903,770 + Psyr_4977 0.52 +1.6 5,903,770 + Psyr_4977 0.52 -3.8 5,903,792 - Psyr_4977 0.54 +0.1 5,903,792 - Psyr_4977 0.54 -1.2 5,903,792 - Psyr_4977 0.54 +0.2 5,903,792 - Psyr_4977 0.54 +0.1 5,903,792 - Psyr_4977 0.54 -2.3 5,903,814 + Psyr_4977 0.56 +3.5 5,903,814 + Psyr_4977 0.56 +2.1 5,903,931 + Psyr_4977 0.68 -1.9 5,903,931 + Psyr_4977 0.68 -1.6 5,903,945 - Psyr_4977 0.69 +0.1 5,903,945 - Psyr_4977 0.69 -2.3 5,903,990 + Psyr_4977 0.73 -0.7 5,903,990 + Psyr_4977 0.73 -1.3 5,903,990 + Psyr_4977 0.73 +2.9 5,903,990 + Psyr_4977 0.73 +0.9 5,903,990 + Psyr_4977 0.73 -0.0 5,903,990 + Psyr_4977 0.73 +2.1 5,903,990 + Psyr_4977 0.73 -2.9 5,903,991 - Psyr_4977 0.73 -1.7 5,903,991 - Psyr_4977 0.73 +0.1 5,903,991 - Psyr_4977 0.73 +1.6 5,903,991 - Psyr_4977 0.73 +0.1 5,903,991 - Psyr_4977 0.73 -0.1 5,903,991 - Psyr_4977 0.73 -0.8 5,903,991 - Psyr_4977 0.73 -3.3 5,903,991 - Psyr_4977 0.73 -0.5 5,904,051 + Psyr_4977 0.79 -2.6 5,904,051 + Psyr_4977 0.79 +0.5 5,904,051 + Psyr_4977 0.79 -2.9 5,904,052 - Psyr_4977 0.80 -1.0 5,904,052 - Psyr_4977 0.80 -1.9 5,904,118 - Psyr_4977 0.86 -1.4 5,904,133 + Psyr_4977 0.88 +1.1 5,904,133 + Psyr_4977 0.88 -2.0 5,904,133 + Psyr_4977 0.88 -0.7 5,904,133 + Psyr_4977 0.88 -3.1 5,904,133 + Psyr_4977 0.88 -0.9 5,904,133 + Psyr_4977 0.88 -1.8 5,904,133 + Psyr_4977 0.88 -2.9 5,904,134 - Psyr_4977 0.88 +1.6 5,904,134 - Psyr_4977 0.88 +0.1 5,904,134 - Psyr_4977 0.88 +3.9 5,904,134 - Psyr_4977 0.88 -1.1 5,904,134 - Psyr_4977 0.88 +2.1 5,904,192 + +2.9 5,904,226 + -1.5 5,904,258 + -0.2 5,904,258 + +2.9 5,904,258 + -4.6 5,904,258 + -1.0 5,904,258 + +2.0 5,904,258 + -2.0 5,904,258 + +0.5 5,904,258 + +3.2 5,904,258 + -0.5 5,904,258 + +0.0 5,904,258 + -3.0 5,904,258 + +4.0 5,904,258 + -4.3 5,904,258 + -3.7 5,904,258 + -3.2 5,904,258 + -3.0 5,904,258 + +0.0 5,904,258 + +0.0 5,904,258 + -5.3 5,904,259 - +1.9 5,904,259 - +3.7 5,904,259 - +3.4 5,904,259 - -0.3 5,904,259 - +4.0 5,904,259 - +5.2 5,904,259 - -0.7 5,904,259 - +0.8 5,904,259 - +0.0 5,904,259 - -1.7 5,904,259 - -0.1 5,904,259 - +0.0 5,904,259 - +4.6 5,904,260 + -2.1 5,904,260 + -0.8 5,904,260 + -1.6 5,904,260 + +0.0 5,904,260 + -0.6 5,904,260 + -2.3 5,904,260 + -1.0 5,904,261 - +4.1 5,904,261 - +1.6 5,904,261 - -0.2 5,904,261 - -0.9 5,904,261 - +3.2 5,904,261 - -2.7 5,904,261 - -3.7 5,904,261 - -1.6 5,904,261 - -0.1 5,904,261 - -4.1 5,904,267 + +1.0 5,904,267 + -1.1 5,904,268 - -1.7 5,904,268 - +0.0 5,904,268 - -2.1 5,904,311 + +2.0 5,904,378 + +2.4 5,904,393 + -0.6 5,904,393 + -2.8 5,904,393 + +0.0 5,904,393 + -3.3 5,904,393 + -2.3 5,904,394 - -1.6 5,904,394 - +3.2 5,904,430 + -3.5 5,904,430 + -2.3 5,904,430 + -1.0 5,904,430 + -3.0 5,904,430 + -3.6 5,904,430 + +2.9 5,904,430 + -0.7 5,904,431 - -1.1 5,904,453 + Psyr_4978 0.14 -3.1 5,904,587 + Psyr_4978 0.58 +0.0 5,904,587 + Psyr_4978 0.58 -2.5 5,904,587 + Psyr_4978 0.58 +2.6 5,904,587 + Psyr_4978 0.58 +2.4 5,904,587 + Psyr_4978 0.58 +0.0 5,904,588 - Psyr_4978 0.59 -1.3 5,904,590 + Psyr_4978 0.59 +1.0 5,904,591 - Psyr_4978 0.60 +0.0 5,904,723 - +3.7 5,904,813 - +2.6 5,904,828 + -3.9 5,904,875 - -0.3 5,904,892 + +3.1 5,904,900 + +2.1 5,904,900 + -3.0 5,904,906 - -0.1 5,904,945 + Psyr_4979 0.12 +0.1 5,904,995 - Psyr_4979 0.21 -1.1 5,905,017 + Psyr_4979 0.25 +2.6 5,905,017 + Psyr_4979 0.25 -1.5 5,905,017 + Psyr_4979 0.25 -5.4 5,905,038 + Psyr_4979 0.28 -2.5 5,905,103 - Psyr_4979 0.40 -0.9 5,905,207 + Psyr_4979 0.59 -3.4 5,905,208 - Psyr_4979 0.59 -2.2 5,905,208 - Psyr_4979 0.59 -2.0 5,905,208 - Psyr_4979 0.59 +0.1 5,905,239 + Psyr_4979 0.64 -2.7 5,905,240 - Psyr_4979 0.65 -2.9
Or see this region's nucleotide sequence