Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4972 and Psyr_4973 are separated by 63 nucleotides Psyr_4973 and Psyr_4974 are separated by 33 nucleotides
Psyr_4972: Psyr_4972 - Sel1-like repeat protein, at 5,896,106 to 5,897,137
_4972
Psyr_4973: Psyr_4973 - hypothetical protein, at 5,897,201 to 5,898,283
_4973
Psyr_4974: Psyr_4974 - Rhs element Vgr protein, at 5,898,317 to 5,901,193
_4974
Position (kb) 5897
5898
5899 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 5896.202 kb on - strand at 5896.297 kb on - strand, within Psyr_4972 at 5896.338 kb on + strand, within Psyr_4972 at 5896.338 kb on + strand, within Psyr_4972 at 5896.347 kb on - strand, within Psyr_4972 at 5896.373 kb on - strand, within Psyr_4972 at 5896.373 kb on - strand, within Psyr_4972 at 5896.376 kb on + strand, within Psyr_4972 at 5896.376 kb on + strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.514 kb on + strand, within Psyr_4972 at 5896.514 kb on + strand, within Psyr_4972 at 5896.519 kb on - strand, within Psyr_4972 at 5896.525 kb on - strand, within Psyr_4972 at 5896.548 kb on + strand at 5896.553 kb on - strand, within Psyr_4972 at 5896.553 kb on - strand, within Psyr_4972 at 5896.553 kb on - strand, within Psyr_4972 at 5896.565 kb on + strand, within Psyr_4972 at 5896.607 kb on + strand, within Psyr_4972 at 5896.610 kb on + strand, within Psyr_4972 at 5896.610 kb on + strand, within Psyr_4972 at 5896.611 kb on - strand, within Psyr_4972 at 5896.611 kb on - strand, within Psyr_4972 at 5896.612 kb on + strand, within Psyr_4972 at 5896.654 kb on - strand, within Psyr_4972 at 5896.667 kb on + strand, within Psyr_4972 at 5896.667 kb on + strand, within Psyr_4972 at 5896.667 kb on + strand, within Psyr_4972 at 5896.713 kb on - strand, within Psyr_4972 at 5896.734 kb on + strand, within Psyr_4972 at 5896.735 kb on - strand, within Psyr_4972 at 5896.777 kb on + strand, within Psyr_4972 at 5896.914 kb on + strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5896.918 kb on - strand, within Psyr_4972 at 5897.104 kb on + strand at 5897.146 kb on + strand at 5897.146 kb on + strand at 5897.147 kb on - strand at 5897.189 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.358 kb on + strand, within Psyr_4973 at 5897.358 kb on + strand, within Psyr_4973 at 5897.358 kb on + strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.470 kb on + strand, within Psyr_4973 at 5897.471 kb on - strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.603 kb on - strand, within Psyr_4973 at 5897.603 kb on - strand, within Psyr_4973 at 5897.608 kb on + strand, within Psyr_4973 at 5897.608 kb on + strand, within Psyr_4973 at 5897.675 kb on + strand, within Psyr_4973 at 5897.676 kb on - strand, within Psyr_4973 at 5897.678 kb on + strand, within Psyr_4973 at 5897.678 kb on + strand, within Psyr_4973 at 5897.679 kb on - strand, within Psyr_4973 at 5897.741 kb on + strand, within Psyr_4973 at 5897.742 kb on - strand, within Psyr_4973 at 5897.754 kb on - strand, within Psyr_4973 at 5897.777 kb on - strand, within Psyr_4973 at 5897.940 kb on - strand, within Psyr_4973 at 5897.940 kb on - strand, within Psyr_4973 at 5897.991 kb on + strand, within Psyr_4973 at 5897.991 kb on + strand, within Psyr_4973 at 5897.991 kb on + strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5898.084 kb on - strand, within Psyr_4973 at 5898.149 kb on - strand, within Psyr_4973 at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.316 kb on + strand at 5898.316 kb on + strand at 5898.316 kb on + strand at 5898.316 kb on + strand at 5898.317 kb on - strand at 5898.317 kb on - strand at 5898.317 kb on - strand at 5898.317 kb on - strand at 5898.665 kb on + strand, within Psyr_4974 at 5898.666 kb on - strand, within Psyr_4974 at 5898.670 kb on + strand, within Psyr_4974 at 5898.671 kb on - strand, within Psyr_4974 at 5898.734 kb on + strand, within Psyr_4974 at 5898.735 kb on - strand, within Psyr_4974 at 5898.735 kb on - strand, within Psyr_4974 at 5898.735 kb on - strand, within Psyr_4974 at 5898.756 kb on - strand, within Psyr_4974 at 5898.779 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.867 kb on - strand, within Psyr_4974 at 5899.136 kb on + strand, within Psyr_4974 at 5899.148 kb on + strand, within Psyr_4974
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,896,202 - -1.3 5,896,297 - Psyr_4972 0.19 -0.8 5,896,338 + Psyr_4972 0.22 -0.3 5,896,338 + Psyr_4972 0.22 +1.0 5,896,347 - Psyr_4972 0.23 -2.3 5,896,373 - Psyr_4972 0.26 -3.5 5,896,373 - Psyr_4972 0.26 +0.4 5,896,376 + Psyr_4972 0.26 -0.5 5,896,376 + Psyr_4972 0.26 -4.2 5,896,377 - Psyr_4972 0.26 -2.2 5,896,377 - Psyr_4972 0.26 +3.5 5,896,377 - Psyr_4972 0.26 -2.5 5,896,377 - Psyr_4972 0.26 -1.9 5,896,377 - Psyr_4972 0.26 -5.3 5,896,514 + Psyr_4972 0.40 -2.1 5,896,514 + Psyr_4972 0.40 -2.2 5,896,519 - Psyr_4972 0.40 -1.0 5,896,525 - Psyr_4972 0.41 +2.6 5,896,548 + +1.0 5,896,553 - Psyr_4972 0.43 +0.0 5,896,553 - Psyr_4972 0.43 -2.0 5,896,553 - Psyr_4972 0.43 -3.3 5,896,565 + Psyr_4972 0.44 -1.7 5,896,607 + Psyr_4972 0.49 -2.6 5,896,610 + Psyr_4972 0.49 +1.2 5,896,610 + Psyr_4972 0.49 -0.3 5,896,611 - Psyr_4972 0.49 -1.0 5,896,611 - Psyr_4972 0.49 +2.0 5,896,612 + Psyr_4972 0.49 -2.3 5,896,654 - Psyr_4972 0.53 -3.0 5,896,667 + Psyr_4972 0.54 +3.0 5,896,667 + Psyr_4972 0.54 +3.0 5,896,667 + Psyr_4972 0.54 -0.1 5,896,713 - Psyr_4972 0.59 -2.0 5,896,734 + Psyr_4972 0.61 +2.0 5,896,735 - Psyr_4972 0.61 -2.8 5,896,777 + Psyr_4972 0.65 -1.1 5,896,914 + Psyr_4972 0.78 -1.3 5,896,917 + Psyr_4972 0.79 -1.7 5,896,917 + Psyr_4972 0.79 -2.9 5,896,918 - Psyr_4972 0.79 -2.0 5,897,104 + +3.4 5,897,146 + -0.3 5,897,146 + -3.0 5,897,147 - -1.4 5,897,189 + +2.6 5,897,221 + -1.6 5,897,221 + +0.3 5,897,221 + +3.2 5,897,221 + -2.0 5,897,221 + +1.0 5,897,221 + +1.6 5,897,222 - -2.8 5,897,222 - -2.6 5,897,222 - -1.5 5,897,222 - -1.0 5,897,225 + +0.9 5,897,225 + +0.3 5,897,225 + +2.4 5,897,225 + -0.4 5,897,225 + +2.6 5,897,225 + +2.4 5,897,225 + -2.3 5,897,225 + -0.6 5,897,226 - -1.7 5,897,226 - -2.1 5,897,358 + Psyr_4973 0.14 +0.2 5,897,358 + Psyr_4973 0.14 +0.2 5,897,358 + Psyr_4973 0.14 -1.5 5,897,359 - Psyr_4973 0.15 -1.3 5,897,359 - Psyr_4973 0.15 -1.3 5,897,359 - Psyr_4973 0.15 -1.8 5,897,470 + Psyr_4973 0.25 -3.3 5,897,471 - Psyr_4973 0.25 -6.4 5,897,602 + Psyr_4973 0.37 +0.7 5,897,602 + Psyr_4973 0.37 -1.3 5,897,602 + Psyr_4973 0.37 +1.6 5,897,602 + Psyr_4973 0.37 -0.7 5,897,602 + Psyr_4973 0.37 -1.6 5,897,603 - Psyr_4973 0.37 -3.9 5,897,603 - Psyr_4973 0.37 +0.0 5,897,608 + Psyr_4973 0.38 -1.1 5,897,608 + Psyr_4973 0.38 +1.6 5,897,675 + Psyr_4973 0.44 -1.3 5,897,676 - Psyr_4973 0.44 +3.4 5,897,678 + Psyr_4973 0.44 -4.3 5,897,678 + Psyr_4973 0.44 +1.6 5,897,679 - Psyr_4973 0.44 +1.0 5,897,741 + Psyr_4973 0.50 -2.0 5,897,742 - Psyr_4973 0.50 -0.5 5,897,754 - Psyr_4973 0.51 +3.7 5,897,777 - Psyr_4973 0.53 -2.0 5,897,940 - Psyr_4973 0.68 +2.9 5,897,940 - Psyr_4973 0.68 +1.6 5,897,991 + Psyr_4973 0.73 -0.8 5,897,991 + Psyr_4973 0.73 -1.1 5,897,991 + Psyr_4973 0.73 +3.4 5,897,992 - Psyr_4973 0.73 -1.4 5,897,992 - Psyr_4973 0.73 -0.5 5,898,084 - Psyr_4973 0.82 -1.5 5,898,149 - Psyr_4973 0.88 -1.4 5,898,312 + -1.5 5,898,312 + -2.4 5,898,312 + +1.6 5,898,312 + -2.1 5,898,312 + +2.0 5,898,312 + +0.5 5,898,312 + -0.9 5,898,312 + -0.9 5,898,312 + -0.2 5,898,312 + +3.4 5,898,312 + +1.6 5,898,312 + -0.4 5,898,312 + -1.4 5,898,312 + -1.5 5,898,312 + +2.4 5,898,312 + -1.5 5,898,312 + -0.2 5,898,312 + -3.8 5,898,312 + +3.5 5,898,312 + +0.6 5,898,312 + -1.6 5,898,312 + -2.8 5,898,313 - +4.7 5,898,313 - -1.1 5,898,313 - -2.3 5,898,313 - -1.5 5,898,313 - -0.7 5,898,313 - -1.4 5,898,313 - -2.3 5,898,313 - -4.0 5,898,313 - +3.0 5,898,313 - -4.2 5,898,313 - +0.0 5,898,313 - +2.4 5,898,313 - +0.0 5,898,313 - -1.3 5,898,313 - -3.5 5,898,313 - -1.1 5,898,313 - +0.3 5,898,313 - -2.7 5,898,313 - -3.9 5,898,313 - +0.0 5,898,313 - -6.3 5,898,313 - -0.6 5,898,313 - +1.1 5,898,313 - -0.5 5,898,313 - +0.0 5,898,313 - +4.2 5,898,313 - +3.0 5,898,313 - -1.8 5,898,313 - -1.4 5,898,313 - +3.4 5,898,316 + +0.3 5,898,316 + -0.3 5,898,316 + -0.7 5,898,316 + -0.4 5,898,317 - +2.4 5,898,317 - -2.7 5,898,317 - +0.0 5,898,317 - -1.2 5,898,665 + Psyr_4974 0.12 -1.4 5,898,666 - Psyr_4974 0.12 +2.9 5,898,670 + Psyr_4974 0.12 +2.4 5,898,671 - Psyr_4974 0.12 -1.4 5,898,734 + Psyr_4974 0.14 -2.1 5,898,735 - Psyr_4974 0.15 -1.7 5,898,735 - Psyr_4974 0.15 +1.6 5,898,735 - Psyr_4974 0.15 +4.4 5,898,756 - Psyr_4974 0.15 +4.0 5,898,779 + Psyr_4974 0.16 -2.1 5,898,794 + Psyr_4974 0.17 +0.2 5,898,794 + Psyr_4974 0.17 +2.4 5,898,794 + Psyr_4974 0.17 -0.4 5,898,794 + Psyr_4974 0.17 -1.3 5,898,794 + Psyr_4974 0.17 -1.4 5,898,794 + Psyr_4974 0.17 +2.9 5,898,794 + Psyr_4974 0.17 +0.5 5,898,794 + Psyr_4974 0.17 +3.2 5,898,794 + Psyr_4974 0.17 +1.0 5,898,795 - Psyr_4974 0.17 +4.1 5,898,795 - Psyr_4974 0.17 +1.0 5,898,795 - Psyr_4974 0.17 -1.4 5,898,795 - Psyr_4974 0.17 -3.9 5,898,867 - Psyr_4974 0.19 -4.1 5,899,136 + Psyr_4974 0.28 +2.3 5,899,148 + Psyr_4974 0.29 -3.1
Or see this region's nucleotide sequence