Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4952 and Psyr_4953 are separated by 69 nucleotides Psyr_4953 and Psyr_4954 are separated by 14 nucleotides
Psyr_4952: Psyr_4952 - hypothetical protein, at 5,870,498 to 5,871,247
_4952
Psyr_4953: Psyr_4953 - Uncharacterized conserved protein UCP028301, at 5,871,317 to 5,871,850
_4953
Psyr_4954: Psyr_4954 - Protein of unknown function DUF877, at 5,871,865 to 5,873,367
_4954
Position (kb) 5871
5872 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5870.332 kb on + strand at 5870.332 kb on + strand at 5870.332 kb on + strand at 5870.332 kb on + strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.333 kb on - strand at 5870.335 kb on - strand at 5870.493 kb on + strand at 5870.493 kb on + strand at 5870.493 kb on + strand at 5870.493 kb on + strand at 5870.516 kb on - strand at 5870.517 kb on + strand at 5870.517 kb on + strand at 5870.517 kb on + strand at 5870.517 kb on + strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.518 kb on - strand at 5870.554 kb on + strand at 5870.588 kb on + strand, within Psyr_4952 at 5870.588 kb on + strand, within Psyr_4952 at 5870.588 kb on + strand, within Psyr_4952 at 5870.589 kb on - strand, within Psyr_4952 at 5870.589 kb on - strand, within Psyr_4952 at 5870.613 kb on + strand, within Psyr_4952 at 5870.640 kb on - strand, within Psyr_4952 at 5870.640 kb on - strand, within Psyr_4952 at 5870.708 kb on + strand, within Psyr_4952 at 5870.708 kb on + strand, within Psyr_4952 at 5870.709 kb on - strand, within Psyr_4952 at 5870.807 kb on + strand, within Psyr_4952 at 5870.807 kb on + strand, within Psyr_4952 at 5870.808 kb on - strand, within Psyr_4952 at 5870.808 kb on - strand, within Psyr_4952 at 5870.951 kb on + strand, within Psyr_4952 at 5870.951 kb on + strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.978 kb on + strand, within Psyr_4952 at 5870.978 kb on + strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5871.155 kb on - strand, within Psyr_4952 at 5871.245 kb on + strand at 5871.335 kb on - strand at 5871.335 kb on - strand at 5871.376 kb on + strand, within Psyr_4953 at 5871.383 kb on + strand, within Psyr_4953 at 5871.383 kb on + strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.848 kb on + strand at 5871.848 kb on + strand at 5871.873 kb on + strand at 5872.034 kb on + strand, within Psyr_4954 at 5872.034 kb on + strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.187 kb on - strand, within Psyr_4954 at 5872.187 kb on - strand, within Psyr_4954 at 5872.315 kb on + strand, within Psyr_4954 at 5872.315 kb on + strand, within Psyr_4954 at 5872.316 kb on - strand, within Psyr_4954 at 5872.316 kb on - strand, within Psyr_4954 at 5872.328 kb on - strand, within Psyr_4954 at 5872.373 kb on - strand, within Psyr_4954 at 5872.373 kb on - strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.546 kb on + strand, within Psyr_4954 at 5872.547 kb on - strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.724 kb on - strand, within Psyr_4954 at 5872.827 kb on + strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,870,332 + -0.4 5,870,332 + +0.4 5,870,332 + -0.9 5,870,332 + -2.1 5,870,333 - -2.1 5,870,333 - +3.2 5,870,333 - +0.2 5,870,333 - -3.3 5,870,333 - -0.2 5,870,333 - -1.4 5,870,333 - -0.4 5,870,335 - +2.6 5,870,493 + -0.5 5,870,493 + -2.4 5,870,493 + -2.3 5,870,493 + +1.6 5,870,516 - +1.1 5,870,517 + +0.7 5,870,517 + +0.3 5,870,517 + +2.9 5,870,517 + +0.1 5,870,518 - +0.1 5,870,518 - -1.1 5,870,518 - -0.9 5,870,518 - +2.4 5,870,518 - +0.9 5,870,518 - -0.5 5,870,518 - +0.8 5,870,518 - +3.6 5,870,518 - -1.6 5,870,518 - -0.8 5,870,554 + +1.6 5,870,588 + Psyr_4952 0.12 +2.1 5,870,588 + Psyr_4952 0.12 +0.1 5,870,588 + Psyr_4952 0.12 +0.5 5,870,589 - Psyr_4952 0.12 -0.4 5,870,589 - Psyr_4952 0.12 +0.1 5,870,613 + Psyr_4952 0.15 -0.3 5,870,640 - Psyr_4952 0.19 +2.6 5,870,640 - Psyr_4952 0.19 +0.1 5,870,708 + Psyr_4952 0.28 +0.1 5,870,708 + Psyr_4952 0.28 +0.1 5,870,709 - Psyr_4952 0.28 -1.8 5,870,807 + Psyr_4952 0.41 -0.6 5,870,807 + Psyr_4952 0.41 +0.6 5,870,808 - Psyr_4952 0.41 -0.1 5,870,808 - Psyr_4952 0.41 +5.1 5,870,951 + Psyr_4952 0.60 -0.7 5,870,951 + Psyr_4952 0.60 +1.2 5,870,952 - Psyr_4952 0.61 +0.0 5,870,952 - Psyr_4952 0.61 -2.1 5,870,952 - Psyr_4952 0.61 +1.1 5,870,952 - Psyr_4952 0.61 +0.3 5,870,952 - Psyr_4952 0.61 +3.5 5,870,952 - Psyr_4952 0.61 +2.1 5,870,955 + Psyr_4952 0.61 -1.1 5,870,955 + Psyr_4952 0.61 -1.5 5,870,955 + Psyr_4952 0.61 +3.1 5,870,955 + Psyr_4952 0.61 -0.8 5,870,955 + Psyr_4952 0.61 -1.3 5,870,955 + Psyr_4952 0.61 -2.8 5,870,955 + Psyr_4952 0.61 +1.1 5,870,956 - Psyr_4952 0.61 +0.7 5,870,956 - Psyr_4952 0.61 -1.9 5,870,956 - Psyr_4952 0.61 +1.6 5,870,956 - Psyr_4952 0.61 -0.8 5,870,956 - Psyr_4952 0.61 -1.9 5,870,956 - Psyr_4952 0.61 +0.6 5,870,956 - Psyr_4952 0.61 +2.1 5,870,956 - Psyr_4952 0.61 -0.5 5,870,956 - Psyr_4952 0.61 -2.0 5,870,963 + Psyr_4952 0.62 +3.2 5,870,963 + Psyr_4952 0.62 -1.2 5,870,963 + Psyr_4952 0.62 +0.1 5,870,964 - Psyr_4952 0.62 +1.0 5,870,964 - Psyr_4952 0.62 -0.7 5,870,964 - Psyr_4952 0.62 -1.0 5,870,964 - Psyr_4952 0.62 -1.5 5,870,964 - Psyr_4952 0.62 +3.9 5,870,978 + Psyr_4952 0.64 +0.1 5,870,978 + Psyr_4952 0.64 +1.6 5,870,979 - Psyr_4952 0.64 -1.4 5,870,979 - Psyr_4952 0.64 -2.6 5,870,979 - Psyr_4952 0.64 +3.1 5,870,979 - Psyr_4952 0.64 +2.6 5,870,979 - Psyr_4952 0.64 -0.6 5,871,155 - Psyr_4952 0.88 -1.5 5,871,245 + +4.1 5,871,335 - -3.4 5,871,335 - -3.4 5,871,376 + Psyr_4953 0.11 -1.1 5,871,383 + Psyr_4953 0.12 +2.4 5,871,383 + Psyr_4953 0.12 -3.1 5,871,384 - Psyr_4953 0.13 +0.1 5,871,384 - Psyr_4953 0.13 -1.1 5,871,384 - Psyr_4953 0.13 -1.8 5,871,384 - Psyr_4953 0.13 -3.1 5,871,384 - Psyr_4953 0.13 -2.3 5,871,384 - Psyr_4953 0.13 +0.1 5,871,436 - Psyr_4953 0.22 -2.2 5,871,436 - Psyr_4953 0.22 +1.6 5,871,436 - Psyr_4953 0.22 -3.1 5,871,848 + -1.4 5,871,848 + -0.9 5,871,873 + +0.1 5,872,034 + Psyr_4954 0.11 -0.5 5,872,034 + Psyr_4954 0.11 +2.6 5,872,035 - Psyr_4954 0.11 -0.2 5,872,035 - Psyr_4954 0.11 -0.5 5,872,035 - Psyr_4954 0.11 -2.4 5,872,187 - Psyr_4954 0.21 +0.1 5,872,187 - Psyr_4954 0.21 -2.5 5,872,315 + Psyr_4954 0.30 +0.1 5,872,315 + Psyr_4954 0.30 -1.3 5,872,316 - Psyr_4954 0.30 -1.2 5,872,316 - Psyr_4954 0.30 +1.1 5,872,328 - Psyr_4954 0.31 +2.1 5,872,373 - Psyr_4954 0.34 -2.2 5,872,373 - Psyr_4954 0.34 -4.1 5,872,402 + Psyr_4954 0.36 +3.9 5,872,402 + Psyr_4954 0.36 -1.3 5,872,402 + Psyr_4954 0.36 -0.6 5,872,402 + Psyr_4954 0.36 +2.6 5,872,402 + Psyr_4954 0.36 +2.6 5,872,402 + Psyr_4954 0.36 -0.5 5,872,402 + Psyr_4954 0.36 -2.4 5,872,402 + Psyr_4954 0.36 +3.4 5,872,403 - Psyr_4954 0.36 -0.4 5,872,403 - Psyr_4954 0.36 -1.4 5,872,403 - Psyr_4954 0.36 -1.2 5,872,403 - Psyr_4954 0.36 -1.4 5,872,403 - Psyr_4954 0.36 -2.9 5,872,403 - Psyr_4954 0.36 -1.2 5,872,403 - Psyr_4954 0.36 -1.1 5,872,403 - Psyr_4954 0.36 -4.9 5,872,403 - Psyr_4954 0.36 +3.8 5,872,403 - Psyr_4954 0.36 +1.4 5,872,403 - Psyr_4954 0.36 -2.1 5,872,403 - Psyr_4954 0.36 -2.9 5,872,403 - Psyr_4954 0.36 -1.1 5,872,403 - Psyr_4954 0.36 +2.9 5,872,403 - Psyr_4954 0.36 -0.4 5,872,546 + Psyr_4954 0.45 -0.9 5,872,547 - Psyr_4954 0.45 +3.6 5,872,702 + Psyr_4954 0.56 +3.5 5,872,702 + Psyr_4954 0.56 +0.1 5,872,702 + Psyr_4954 0.56 -0.0 5,872,703 - Psyr_4954 0.56 -1.9 5,872,703 - Psyr_4954 0.56 -0.8 5,872,703 - Psyr_4954 0.56 -1.1 5,872,724 - Psyr_4954 0.57 -1.6 5,872,827 + Psyr_4954 0.64 -2.0 5,872,828 - Psyr_4954 0.64 +3.2 5,872,828 - Psyr_4954 0.64 +3.1 5,872,828 - Psyr_4954 0.64 -0.8 5,872,828 - Psyr_4954 0.64 +2.6 5,872,828 - Psyr_4954 0.64 -0.4 5,872,828 - Psyr_4954 0.64 +0.8
Or see this region's nucleotide sequence