Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4905 and Psyr_4906 are separated by 202 nucleotides Psyr_4906 and Psyr_4907 are separated by 312 nucleotides Psyr_4907 and Psyr_4908 are separated by 143 nucleotides Psyr_4908 and Psyr_4909 are separated by 57 nucleotides
Psyr_4905: Psyr_4905 - conserved hypothetical protein, at 5,818,494 to 5,818,727
_4905
Psyr_4906: Psyr_4906 - lipoprotein, putative, at 5,818,930 to 5,819,208
_4906
Psyr_4907: Psyr_4907 - PAS, at 5,819,521 to 5,820,867
_4907
Psyr_4908: Psyr_4908 - conserved hypothetical protein, at 5,821,011 to 5,821,496
_4908
Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945
_4909
Position (kb) 5819
5820
5821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5818.640 kb on + strand, within Psyr_4905 at 5818.640 kb on + strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.660 kb on + strand, within Psyr_4905 at 5818.660 kb on + strand, within Psyr_4905 at 5818.660 kb on + strand, within Psyr_4905 at 5818.660 kb on + strand, within Psyr_4905 at 5818.660 kb on + strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.668 kb on + strand, within Psyr_4905 at 5818.668 kb on + strand, within Psyr_4905 at 5818.727 kb on + strand at 5818.727 kb on + strand at 5818.727 kb on + strand at 5818.727 kb on + strand at 5818.875 kb on + strand at 5818.876 kb on - strand at 5818.876 kb on - strand at 5818.903 kb on + strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5818.940 kb on + strand at 5818.941 kb on - strand at 5818.941 kb on - strand at 5818.941 kb on - strand at 5818.941 kb on - strand at 5818.941 kb on - strand at 5818.941 kb on - strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.425 kb on + strand at 5819.426 kb on - strand at 5819.426 kb on - strand at 5819.426 kb on - strand at 5819.429 kb on + strand at 5819.430 kb on - strand at 5819.432 kb on - strand at 5819.432 kb on - strand at 5819.438 kb on - strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.492 kb on - strand at 5819.492 kb on - strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.521 kb on - strand at 5819.532 kb on + strand at 5819.532 kb on + strand at 5819.532 kb on + strand at 5819.532 kb on + strand at 5819.533 kb on - strand at 5819.570 kb on + strand at 5819.570 kb on + strand at 5819.570 kb on + strand at 5819.570 kb on + strand at 5819.570 kb on + strand at 5819.571 kb on - strand at 5819.571 kb on - strand at 5819.571 kb on - strand at 5819.571 kb on - strand at 5819.662 kb on - strand, within Psyr_4907 at 5819.756 kb on - strand, within Psyr_4907 at 5819.854 kb on + strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.855 kb on - strand, within Psyr_4907 at 5819.902 kb on + strand, within Psyr_4907 at 5819.902 kb on + strand, within Psyr_4907 at 5819.903 kb on - strand, within Psyr_4907 at 5819.983 kb on - strand, within Psyr_4907 at 5820.121 kb on + strand, within Psyr_4907 at 5820.181 kb on - strand, within Psyr_4907 at 5820.181 kb on - strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.254 kb on - strand, within Psyr_4907 at 5820.335 kb on - strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.932 kb on - strand at 5820.932 kb on - strand at 5821.166 kb on + strand, within Psyr_4908 at 5821.166 kb on + strand, within Psyr_4908 at 5821.166 kb on + strand, within Psyr_4908 at 5821.216 kb on - strand, within Psyr_4908 at 5821.380 kb on + strand, within Psyr_4908 at 5821.380 kb on + strand, within Psyr_4908 at 5821.380 kb on + strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.443 kb on + strand, within Psyr_4908 at 5821.443 kb on + strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.602 kb on + strand at 5821.715 kb on + strand, within Psyr_4909 at 5821.793 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,818,640 + Psyr_4905 0.62 +3.5 5,818,640 + Psyr_4905 0.62 -1.4 5,818,641 - Psyr_4905 0.63 -1.7 5,818,641 - Psyr_4905 0.63 -2.2 5,818,641 - Psyr_4905 0.63 +1.1 5,818,641 - Psyr_4905 0.63 -1.4 5,818,660 + Psyr_4905 0.71 -3.1 5,818,660 + Psyr_4905 0.71 +0.1 5,818,660 + Psyr_4905 0.71 -0.4 5,818,660 + Psyr_4905 0.71 +0.1 5,818,660 + Psyr_4905 0.71 -4.2 5,818,661 - Psyr_4905 0.71 +2.1 5,818,661 - Psyr_4905 0.71 -1.2 5,818,661 - Psyr_4905 0.71 -1.9 5,818,668 + Psyr_4905 0.74 -0.6 5,818,668 + Psyr_4905 0.74 -2.7 5,818,727 + +0.3 5,818,727 + +3.1 5,818,727 + +1.1 5,818,727 + +3.2 5,818,875 + +1.7 5,818,876 - +1.1 5,818,876 - +1.4 5,818,903 + +3.8 5,818,904 - -2.4 5,818,904 - -1.1 5,818,904 - -1.0 5,818,940 + -1.9 5,818,941 - +4.9 5,818,941 - +4.1 5,818,941 - -0.7 5,818,941 - +2.7 5,818,941 - -0.7 5,818,941 - +3.5 5,819,255 + +2.7 5,819,255 + +4.8 5,819,255 + +0.1 5,819,425 + -1.7 5,819,426 - +1.4 5,819,426 - -3.7 5,819,426 - -1.0 5,819,429 + -0.6 5,819,430 - +3.8 5,819,432 - -4.5 5,819,432 - -1.5 5,819,438 - -1.6 5,819,491 + -3.8 5,819,491 + -1.8 5,819,491 + -0.7 5,819,492 - -3.1 5,819,492 - -0.9 5,819,520 + +2.7 5,819,520 + -1.2 5,819,520 + +0.1 5,819,521 - -2.1 5,819,532 + +2.9 5,819,532 + -3.5 5,819,532 + +1.1 5,819,532 + -2.9 5,819,533 - -0.8 5,819,570 + +0.1 5,819,570 + -2.3 5,819,570 + -0.1 5,819,570 + -2.3 5,819,570 + +1.1 5,819,571 - -2.0 5,819,571 - +1.1 5,819,571 - -1.6 5,819,571 - +2.1 5,819,662 - Psyr_4907 0.10 +4.1 5,819,756 - Psyr_4907 0.17 -2.2 5,819,854 + Psyr_4907 0.25 +3.8 5,819,855 - Psyr_4907 0.25 -0.4 5,819,855 - Psyr_4907 0.25 -3.1 5,819,855 - Psyr_4907 0.25 -0.7 5,819,855 - Psyr_4907 0.25 -2.4 5,819,855 - Psyr_4907 0.25 -0.5 5,819,855 - Psyr_4907 0.25 +3.5 5,819,902 + Psyr_4907 0.28 +0.1 5,819,902 + Psyr_4907 0.28 +1.7 5,819,903 - Psyr_4907 0.28 -0.5 5,819,983 - Psyr_4907 0.34 -0.2 5,820,121 + Psyr_4907 0.45 -1.7 5,820,181 - Psyr_4907 0.49 -0.9 5,820,181 - Psyr_4907 0.49 +0.4 5,820,220 + Psyr_4907 0.52 -1.0 5,820,220 + Psyr_4907 0.52 +1.1 5,820,220 + Psyr_4907 0.52 +4.1 5,820,220 + Psyr_4907 0.52 -0.1 5,820,220 + Psyr_4907 0.52 +3.2 5,820,220 + Psyr_4907 0.52 -4.7 5,820,220 + Psyr_4907 0.52 -1.3 5,820,220 + Psyr_4907 0.52 +4.8 5,820,220 + Psyr_4907 0.52 -0.8 5,820,220 + Psyr_4907 0.52 -2.2 5,820,220 + Psyr_4907 0.52 +3.9 5,820,220 + Psyr_4907 0.52 +0.1 5,820,220 + Psyr_4907 0.52 -1.0 5,820,220 + Psyr_4907 0.52 +3.7 5,820,220 + Psyr_4907 0.52 -2.4 5,820,220 + Psyr_4907 0.52 -1.7 5,820,220 + Psyr_4907 0.52 +1.1 5,820,220 + Psyr_4907 0.52 +0.1 5,820,220 + Psyr_4907 0.52 +1.7 5,820,220 + Psyr_4907 0.52 -2.1 5,820,220 + Psyr_4907 0.52 -0.1 5,820,220 + Psyr_4907 0.52 -2.7 5,820,220 + Psyr_4907 0.52 -0.5 5,820,221 - Psyr_4907 0.52 -3.8 5,820,221 - Psyr_4907 0.52 -2.2 5,820,221 - Psyr_4907 0.52 -4.2 5,820,221 - Psyr_4907 0.52 -0.3 5,820,221 - Psyr_4907 0.52 -1.1 5,820,221 - Psyr_4907 0.52 -0.7 5,820,254 - Psyr_4907 0.54 -1.9 5,820,335 - Psyr_4907 0.60 +0.6 5,820,624 + Psyr_4907 0.82 -2.9 5,820,624 + Psyr_4907 0.82 -2.1 5,820,625 - Psyr_4907 0.82 +3.7 5,820,625 - Psyr_4907 0.82 +2.4 5,820,932 - -0.3 5,820,932 - +0.7 5,821,166 + Psyr_4908 0.32 -2.2 5,821,166 + Psyr_4908 0.32 +0.3 5,821,166 + Psyr_4908 0.32 +0.1 5,821,216 - Psyr_4908 0.42 +0.1 5,821,380 + Psyr_4908 0.76 -1.0 5,821,380 + Psyr_4908 0.76 -1.7 5,821,380 + Psyr_4908 0.76 +0.3 5,821,381 - Psyr_4908 0.76 +0.9 5,821,443 + Psyr_4908 0.89 +0.7 5,821,443 + Psyr_4908 0.89 +0.3 5,821,444 - Psyr_4908 0.89 +2.7 5,821,444 - Psyr_4908 0.89 -2.4 5,821,444 - Psyr_4908 0.89 -0.4 5,821,602 + +0.5 5,821,715 + Psyr_4909 0.12 +2.1 5,821,793 + Psyr_4909 0.17 +1.2 5,821,822 + Psyr_4909 0.19 -0.7 5,821,822 + Psyr_4909 0.19 -1.3 5,821,822 + Psyr_4909 0.19 +2.7 5,821,822 + Psyr_4909 0.19 +4.1 5,821,823 - Psyr_4909 0.19 +2.0 5,821,823 - Psyr_4909 0.19 +0.6 5,821,823 - Psyr_4909 0.19 +4.8
Or see this region's nucleotide sequence