Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4879 and Psyr_4880 are separated by 145 nucleotides Psyr_4880 and Psyr_4881 overlap by 2 nucleotides Psyr_4881 and Psyr_4882 are separated by 61 nucleotides
Psyr_4879: Psyr_4879 - hypothetical protein, at 5,791,409 to 5,791,852
_4879
Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438
_4880
Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892
_4881
Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442
_4882
Position (kb) 5791
5792
5793 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5791.004 kb on + strand at 5791.006 kb on + strand at 5791.043 kb on - strand at 5791.102 kb on + strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.103 kb on - strand at 5791.240 kb on + strand at 5791.258 kb on + strand at 5791.374 kb on + strand at 5791.375 kb on - strand at 5791.375 kb on - strand at 5791.405 kb on + strand at 5791.405 kb on + strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.406 kb on - strand at 5791.525 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.776 kb on - strand, within Psyr_4879 at 5791.811 kb on - strand at 5791.817 kb on - strand at 5791.835 kb on + strand at 5791.836 kb on - strand at 5791.851 kb on - strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.939 kb on - strand at 5791.939 kb on - strand at 5791.942 kb on + strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.971 kb on + strand at 5791.971 kb on + strand at 5791.972 kb on - strand at 5791.972 kb on - strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5792.000 kb on - strand at 5792.000 kb on - strand at 5792.118 kb on + strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.373 kb on + strand, within Psyr_4880 at 5792.374 kb on - strand, within Psyr_4880 at 5792.384 kb on + strand, within Psyr_4880 at 5792.385 kb on - strand, within Psyr_4880 at 5792.403 kb on - strand at 5792.403 kb on - strand at 5792.499 kb on - strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.597 kb on - strand, within Psyr_4881 at 5792.829 kb on + strand, within Psyr_4881 at 5792.860 kb on + strand at 5792.860 kb on + strand at 5792.860 kb on + strand at 5792.861 kb on - strand at 5792.861 kb on - strand at 5793.010 kb on - strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.063 kb on - strand, within Psyr_4882 at 5793.063 kb on - strand, within Psyr_4882 at 5793.093 kb on + strand, within Psyr_4882 at 5793.093 kb on + strand, within Psyr_4882 at 5793.094 kb on - strand, within Psyr_4882 at 5793.173 kb on - strand, within Psyr_4882 at 5793.243 kb on - strand, within Psyr_4882 at 5793.252 kb on + strand, within Psyr_4882 at 5793.252 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.374 kb on - strand, within Psyr_4882
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,791,004 + +4.5 5,791,006 + -1.6 5,791,043 - -1.1 5,791,102 + -1.9 5,791,103 - +0.1 5,791,103 - -2.4 5,791,103 - -2.2 5,791,240 + -0.3 5,791,258 + -0.7 5,791,374 + +2.1 5,791,375 - -1.5 5,791,375 - +2.7 5,791,405 + +0.2 5,791,405 + -0.3 5,791,406 - -1.7 5,791,406 - -0.2 5,791,406 - +3.7 5,791,525 + Psyr_4879 0.26 -0.4 5,791,730 + Psyr_4879 0.72 -1.7 5,791,730 + Psyr_4879 0.72 -2.5 5,791,731 - Psyr_4879 0.73 -2.9 5,791,731 - Psyr_4879 0.73 +0.1 5,791,731 - Psyr_4879 0.73 -0.4 5,791,731 - Psyr_4879 0.73 -3.0 5,791,776 - Psyr_4879 0.83 -0.7 5,791,811 - -2.0 5,791,817 - -1.3 5,791,835 + +3.1 5,791,836 - +0.1 5,791,851 - -0.9 5,791,938 + +3.8 5,791,938 + +0.5 5,791,938 + -0.8 5,791,938 + +1.1 5,791,938 + -1.8 5,791,938 + +2.7 5,791,939 - -0.5 5,791,939 - -0.6 5,791,942 + -0.2 5,791,943 - -1.7 5,791,943 - -2.2 5,791,943 - +1.2 5,791,943 - +3.1 5,791,943 - -2.0 5,791,943 - -4.6 5,791,945 + +0.1 5,791,945 + -0.5 5,791,945 + -1.5 5,791,945 + -3.0 5,791,945 + +2.1 5,791,945 + +3.2 5,791,945 + -2.3 5,791,946 - -2.4 5,791,946 - +2.9 5,791,946 - +1.1 5,791,946 - +2.7 5,791,946 - -1.5 5,791,971 + +0.1 5,791,971 + -1.3 5,791,972 - +1.7 5,791,972 - +2.1 5,791,999 + +3.2 5,791,999 + +0.1 5,791,999 + +0.2 5,791,999 + +1.5 5,791,999 + +1.3 5,791,999 + +4.2 5,792,000 - +1.1 5,792,000 - -2.1 5,792,118 + Psyr_4880 0.27 -0.9 5,792,119 - Psyr_4880 0.27 +0.8 5,792,119 - Psyr_4880 0.27 -2.7 5,792,194 - Psyr_4880 0.44 -0.3 5,792,194 - Psyr_4880 0.44 +3.5 5,792,194 - Psyr_4880 0.44 +0.1 5,792,373 + Psyr_4880 0.85 -1.7 5,792,374 - Psyr_4880 0.85 +1.1 5,792,384 + Psyr_4880 0.88 -5.2 5,792,385 - Psyr_4880 0.88 +0.3 5,792,403 - +0.5 5,792,403 - +2.2 5,792,499 - Psyr_4881 0.14 -0.8 5,792,596 + Psyr_4881 0.35 -3.0 5,792,596 + Psyr_4881 0.35 -4.0 5,792,596 + Psyr_4881 0.35 -0.1 5,792,596 + Psyr_4881 0.35 -2.6 5,792,597 - Psyr_4881 0.35 -4.4 5,792,829 + Psyr_4881 0.86 +0.1 5,792,860 + +0.1 5,792,860 + -0.8 5,792,860 + +1.7 5,792,861 - +0.1 5,792,861 - +1.1 5,793,010 - Psyr_4882 0.11 +1.1 5,793,062 + Psyr_4882 0.22 +3.8 5,793,062 + Psyr_4882 0.22 +2.1 5,793,062 + Psyr_4882 0.22 -0.9 5,793,062 + Psyr_4882 0.22 -4.6 5,793,062 + Psyr_4882 0.22 +1.1 5,793,063 - Psyr_4882 0.22 +0.4 5,793,063 - Psyr_4882 0.22 +3.8 5,793,093 + Psyr_4882 0.28 -1.1 5,793,093 + Psyr_4882 0.28 +0.3 5,793,094 - Psyr_4882 0.29 +1.0 5,793,173 - Psyr_4882 0.45 -1.2 5,793,243 - Psyr_4882 0.59 -0.8 5,793,252 + Psyr_4882 0.61 -3.9 5,793,252 + Psyr_4882 0.61 -0.7 5,793,369 + Psyr_4882 0.85 +1.1 5,793,369 + Psyr_4882 0.85 -0.2 5,793,369 + Psyr_4882 0.85 +2.1 5,793,369 + Psyr_4882 0.85 -2.2 5,793,369 + Psyr_4882 0.85 -0.2 5,793,369 + Psyr_4882 0.85 +0.1 5,793,369 + Psyr_4882 0.85 +2.7 5,793,370 - Psyr_4882 0.85 -1.9 5,793,370 - Psyr_4882 0.85 +4.3 5,793,370 - Psyr_4882 0.85 +2.4 5,793,370 - Psyr_4882 0.85 -0.0 5,793,370 - Psyr_4882 0.85 +2.7 5,793,370 - Psyr_4882 0.85 -2.5 5,793,373 + Psyr_4882 0.86 +2.1 5,793,373 + Psyr_4882 0.86 +0.1 5,793,373 + Psyr_4882 0.86 -0.4 5,793,373 + Psyr_4882 0.86 +3.8 5,793,374 - Psyr_4882 0.86 -1.0
Or see this region's nucleotide sequence