Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4877

Experiment: KB with Mitomycin C 0.625 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Mitomycin C 0.625 ug/ml
5,787,875	-		Psyr_4876	0.42	+0.5
5,787,959	+		Psyr_4876	0.50	-2.9
5,787,967	+		Psyr_4876	0.51	-1.3
5,787,967	+		Psyr_4876	0.51	-0.6
5,787,967	+		Psyr_4876	0.51	+2.7
5,787,967	+		Psyr_4876	0.51	-1.0
5,787,968	-		Psyr_4876	0.51	+0.1
5,787,968	-		Psyr_4876	0.51	-1.2
5,787,968	-		Psyr_4876	0.51	+1.7
5,788,007	-		Psyr_4876	0.55	-0.3
5,788,025	+		Psyr_4876	0.57	+0.2
5,788,124	-		Psyr_4876	0.67	+0.7
5,788,132	+		Psyr_4876	0.68	+0.1
5,788,132	+		Psyr_4876	0.68	+0.1
5,788,132	+		Psyr_4876	0.68	+3.4
5,788,132	+		Psyr_4876	0.68	-0.6
5,788,132	+		Psyr_4876	0.68	+0.1
5,788,132	+		Psyr_4876	0.68	-2.3
5,788,132	+		Psyr_4876	0.68	-3.7
5,788,132	+		Psyr_4876	0.68	-1.1
5,788,132	+		Psyr_4876	0.68	-2.5
5,788,132	+		Psyr_4876	0.68	-0.9
5,788,132	+		Psyr_4876	0.68	-0.9
5,788,132	+		Psyr_4876	0.68	+2.1
5,788,132	+		Psyr_4876	0.68	+5.4
5,788,132	+		Psyr_4876	0.68	+1.7
5,788,132	+		Psyr_4876	0.68	+0.1
5,788,132	+		Psyr_4876	0.68	-0.4
5,788,133	-		Psyr_4876	0.68	-0.6
5,788,133	-		Psyr_4876	0.68	-2.3
5,788,133	-		Psyr_4876	0.68	+0.1
5,788,133	-		Psyr_4876	0.68	+1.1
5,788,133	-		Psyr_4876	0.68	+2.0
5,788,133	-		Psyr_4876	0.68	+0.1
5,788,133	-		Psyr_4876	0.68	+2.9
5,788,133	-		Psyr_4876	0.68	+3.7
5,788,133	-		Psyr_4876	0.68	+0.1
5,788,133	-		Psyr_4876	0.68	-2.3
5,788,133	-		Psyr_4876	0.68	-3.0
5,788,133	-		Psyr_4876	0.68	-1.3
5,788,206	+		Psyr_4876	0.76	-3.1
5,788,206	+		Psyr_4876	0.76	-4.8
5,788,206	+		Psyr_4876	0.76	+0.1
5,788,206	+		Psyr_4876	0.76	+0.4
5,788,207	-		Psyr_4876	0.76	-0.3
5,788,207	-		Psyr_4876	0.76	-1.3
5,788,207	-		Psyr_4876	0.76	-1.3
5,788,327	+		Psyr_4876	0.88	-0.9
5,788,327	+		Psyr_4876	0.88	+2.9
5,788,328	-		Psyr_4876	0.88	-1.4
5,788,328	-		Psyr_4876	0.88	+4.2
5,788,328	-		Psyr_4876	0.88	-0.5
5,788,328	-		Psyr_4876	0.88	-0.9
5,788,328	-		Psyr_4876	0.88	+2.7
5,788,328	-		Psyr_4876	0.88	+0.6
5,788,328	-		Psyr_4876	0.88	+0.2
5,788,439	+				+2.5
5,788,439	+				+3.4
5,788,452	-				-0.6
5,788,455	+				+3.8
5,788,455	+				+5.2
5,788,455	+				+0.3
5,788,455	+				-3.0
5,788,455	+				-4.0
5,788,455	+				+1.2
5,788,455	+				-2.2
5,788,455	+				-1.5
5,788,456	-				-0.7
5,788,456	-				-0.4
5,788,456	-				-2.5
5,788,456	-				-2.1
5,788,456	-				-1.0
5,788,518	-				-4.0
5,788,518	-				-1.3
5,788,599	+				-1.2
5,788,599	+				+2.3
5,788,599	+				-1.0
5,788,599	+				-0.1
5,788,599	+				+0.7
5,788,599	+				+0.6
5,788,599	+				-0.7
5,788,599	+				-0.9
5,788,599	+				+3.7
5,788,599	+				-1.3
5,788,599	+				-2.2
5,788,600	-				-0.9
5,788,600	-				-1.7
5,788,600	-				+2.4
5,788,600	-				+4.0
5,788,600	-				-2.8
5,788,600	-				-1.0
5,788,600	-				+3.1
5,788,672	+				+2.4
5,788,672	+				+3.0
5,788,673	-				-1.5
5,788,676	+				-3.1
5,788,676	+				+3.1
5,788,677	-				+1.1
5,788,677	-				-2.2
5,788,701	-				+5.5
5,788,744	+				-3.8
5,788,744	+				-0.2
5,788,768	+				-1.3
5,788,769	-				-0.6
5,788,812	-				-2.6
5,788,871	+				+0.4
5,788,871	+				+0.7
5,788,871	+				-0.4
5,788,871	+				+2.4
5,788,872	-				+1.9
5,788,872	-				+0.9
5,788,872	-				+0.4
5,788,930	+		Psyr_4877	0.17	-1.3
5,788,930	+		Psyr_4877	0.17	+1.1
5,788,930	+		Psyr_4877	0.17	-1.1
5,788,930	+		Psyr_4877	0.17	-1.3
5,788,930	+		Psyr_4877	0.17	-3.0
5,788,931	-		Psyr_4877	0.17	-0.0
5,788,973	+		Psyr_4877	0.24	+3.5
5,788,973	+		Psyr_4877	0.24	+4.7
5,788,973	+		Psyr_4877	0.24	+3.7
5,788,973	+		Psyr_4877	0.24	-0.8
5,788,973	+		Psyr_4877	0.24	-0.7
5,788,973	+		Psyr_4877	0.24	+4.0
5,788,973	+		Psyr_4877	0.24	+3.7
5,788,973	+		Psyr_4877	0.24	-0.7
5,788,973	+		Psyr_4877	0.24	+1.7
5,788,974	-		Psyr_4877	0.24	-1.9
5,788,974	-		Psyr_4877	0.24	+4.2
5,788,974	-		Psyr_4877	0.24	+5.4
5,788,974	-		Psyr_4877	0.24	+2.4
5,788,974	-		Psyr_4877	0.24	-1.0
5,788,974	-		Psyr_4877	0.24	+1.1
5,788,974	-		Psyr_4877	0.24	+0.1
5,788,974	-		Psyr_4877	0.24	+1.6
5,789,025	+		Psyr_4877	0.32	+4.5
5,789,046	-		Psyr_4877	0.35	+2.1
5,789,049	+		Psyr_4877	0.36	-1.3
5,789,049	+		Psyr_4877	0.36	+0.4
5,789,050	-		Psyr_4877	0.36	+2.4
5,789,050	-		Psyr_4877	0.36	-1.0
5,789,138	+		Psyr_4877	0.49	+1.1
5,789,139	-		Psyr_4877	0.50	-1.4
5,789,139	-		Psyr_4877	0.50	+2.9
5,789,398	+				-1.3
5,789,398	+				-0.3
5,789,398	+				+4.2
5,789,398	+				+1.1
5,789,398	+				+3.5
5,789,398	+				-1.3
5,789,399	-				+0.1
5,789,497	-				+0.4
5,789,498	+				+0.5
5,789,498	+				-1.0
5,789,498	+				+0.8
5,789,498	+				-3.6
5,789,498	+				+3.5
5,789,498	+				+4.1
5,789,498	+				-1.0
5,789,498	+				-0.7
5,789,498	+				-1.4
5,789,498	+				-0.6
5,789,499	-				-0.7
5,789,499	-				+0.1
5,789,499	-				+3.7
5,789,499	-				+3.2
5,789,499	-				+0.0
5,789,499	-				-1.1
5,789,499	-				-1.5
5,789,499	-				+2.1
5,789,499	-				+2.4
5,789,499	-				-1.6
5,789,499	-				+0.5
5,789,542	+				+4.5
5,789,614	+				+3.4
5,789,624	+				-0.1
5,789,624	+				+2.7
5,789,625	-				+1.5
5,789,625	-				-0.5
5,789,625	-				-0.2
5,789,630	+				-1.9
5,789,630	+				-0.2
5,789,630	+				+1.7
5,789,630	+				-5.2
5,789,630	+				+3.1
5,789,630	+				-1.3
5,789,630	+				+3.2
5,789,630	+				+3.7
5,789,631	-				-0.4
5,789,631	-				-1.0
5,789,631	-				+0.1
5,789,631	-				-2.2
5,789,631	-				-1.9
5,789,631	-				-0.3
5,789,631	-				-3.9
5,789,640	+				-0.3
5,789,640	+				+2.2
5,789,640	+				-1.8
5,789,640	+				+0.2
5,789,640	+				-0.1
5,789,640	+				+1.1
5,789,641	-				-0.8
5,789,641	-				+1.4
5,789,641	-				+5.4
5,789,642	+				-2.4
5,789,642	+				-1.0
5,789,642	+				+1.1
5,789,642	+				+1.7
5,789,642	+				-1.2
5,789,642	+				+5.1
5,789,642	+				-0.3
5,789,642	+				-0.3
5,789,642	+				+4.0
5,789,642	+				+0.6
5,789,642	+				-1.4
5,789,642	+				+0.1
5,789,642	+				-0.7
5,789,642	+				-0.6
5,789,643	-				-2.3
5,789,643	-				+0.1
5,789,643	-				-0.9
5,789,643	-				+1.1
5,789,643	-				+1.1
5,789,643	-				-0.6
5,789,643	-				-0.7
5,789,643	-				+1.1
5,789,643	-				+5.6
5,789,643	-				+0.3
5,789,643	-				+2.4
5,789,643	-				-1.8
5,789,643	-				+2.7
5,789,643	-				+3.9
5,789,643	-				+0.8
5,789,643	-				-2.8
5,789,643	-				+4.9
5,789,643	-				-3.9
5,789,643	-				+2.4
5,789,643	-				+1.0
5,789,643	-				+0.6
5,789,643	-				+4.6
5,789,643	-				+1.9
5,789,648	+				+0.0
5,789,648	+				-1.6
5,789,648	+				-3.2
5,789,648	+				+2.4
5,789,648	+				+1.0
5,789,648	+				+0.7
5,789,648	+				+3.1
5,789,648	+				-0.3
5,789,648	+				+1.1
5,789,648	+				-1.1
5,789,648	+				-0.3
5,789,649	-				-0.0
5,789,649	-				-1.0
5,789,649	-				+3.2
5,789,649	-				-1.4
5,789,649	-				+0.5
5,789,685	+				-1.3
5,789,685	+				-1.1
5,789,685	+				-1.5
5,789,685	+				+2.9
5,789,685	+				+3.4
5,789,686	-				+0.6
5,789,686	-				-1.7
5,789,686	-				+1.0
5,789,686	-				-1.1
5,789,688	+				+1.7
5,789,758	+				-0.3
5,789,758	+				+1.7
5,789,758	+				-5.0
5,789,758	+				-2.3
5,789,758	+				+2.1
5,789,759	-				-0.5
5,789,759	-				-0.1
5,789,759	-				-2.0
5,789,762	+				-1.4
5,789,762	+				+1.1
5,789,762	+				+4.0
5,789,775	+		Psyr_4878	0.11	+0.1
5,789,776	-		Psyr_4878	0.11	+1.4
5,789,843	+		Psyr_4878	0.16	-4.0
5,789,843	+		Psyr_4878	0.16	-1.0
5,789,844	-		Psyr_4878	0.16	-0.1
5,789,844	-		Psyr_4878	0.16	+3.1
5,789,891	+		Psyr_4878	0.19	+0.1
5,789,891	+		Psyr_4878	0.19	+1.2
5,789,891	+		Psyr_4878	0.19	-4.0
5,789,891	+		Psyr_4878	0.19	-3.5
5,789,891	+		Psyr_4878	0.19	-0.9
5,789,892	-		Psyr_4878	0.20	+2.1
5,789,892	-		Psyr_4878	0.20	-0.9
5,789,892	-		Psyr_4878	0.20	+0.5
5,789,892	-		Psyr_4878	0.20	+0.4
5,789,892	-		Psyr_4878	0.20	-3.6
5,789,963	+		Psyr_4878	0.25	-1.5
5,789,963	+		Psyr_4878	0.25	-1.5
5,789,963	+		Psyr_4878	0.25	+2.9
5,789,964	-		Psyr_4878	0.25	+3.8
5,789,964	-		Psyr_4878	0.25	+0.5
5,789,964	-		Psyr_4878	0.25	-0.5
5,789,964	-		Psyr_4878	0.25	+1.1
5,789,964	-		Psyr_4878	0.25	-1.2
5,789,964	-		Psyr_4878	0.25	+2.1
5,789,964	-		Psyr_4878	0.25	+3.4
5,789,982	+		Psyr_4878	0.26	-0.9
5,790,010	+		Psyr_4878	0.28	+0.8
5,790,010	+		Psyr_4878	0.28	+0.9
5,790,010	+		Psyr_4878	0.28	-2.7
5,790,010	+		Psyr_4878	0.28	+2.7
5,790,010	+		Psyr_4878	0.28	-1.7
5,790,010	+		Psyr_4878	0.28	-1.4
5,790,010	+		Psyr_4878	0.28	+1.9
5,790,010	+		Psyr_4878	0.28	+0.8
5,790,011	-		Psyr_4878	0.28	-0.6
5,790,011	-		Psyr_4878	0.28	+0.2
5,790,030	-		Psyr_4878	0.30	+3.2
5,790,030	-		Psyr_4878	0.30	-0.5
5,790,030	-		Psyr_4878	0.30	-0.9
5,790,095	+		Psyr_4878	0.35	-2.2
5,790,096	-		Psyr_4878	0.35	-0.3
5,790,096	-		Psyr_4878	0.35	+4.0
5,790,096	-		Psyr_4878	0.35	-1.1
5,790,096	-		Psyr_4878	0.35	+1.1
5,790,096	-		Psyr_4878	0.35	+1.7
5,790,138	+		Psyr_4878	0.38	-1.4
5,790,174	-		Psyr_4878	0.40	+2.1
5,790,296	+		Psyr_4878	0.50	+0.3
5,790,296	+		Psyr_4878	0.50	+5.1
5,790,296	+		Psyr_4878	0.50	-2.8
5,790,296	+		Psyr_4878	0.50	-3.3
5,790,297	-		Psyr_4878	0.50	+1.1
5,790,297	-		Psyr_4878	0.50	+2.1
5,790,297	-		Psyr_4878	0.50	-0.1
5,790,317	+		Psyr_4878	0.51	-2.6
5,790,317	+		Psyr_4878	0.51	-3.1
5,790,320	+		Psyr_4878	0.51	-0.7
5,790,320	+		Psyr_4878	0.51	-1.2
5,790,320	+		Psyr_4878	0.51	-1.8
5,790,321	-		Psyr_4878	0.51	-0.4
5,790,323	+		Psyr_4878	0.52	-3.0
5,790,323	+		Psyr_4878	0.52	-4.1
5,790,323	+		Psyr_4878	0.52	+1.3
5,790,323	+		Psyr_4878	0.52	+0.3
5,790,323	+		Psyr_4878	0.52	+4.1
5,790,324	-		Psyr_4878	0.52	-0.1
5,790,324	-		Psyr_4878	0.52	-0.4
5,790,324	-		Psyr_4878	0.52	-2.2