Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4870 and Psyr_4871 are separated by 228 nucleotides Psyr_4871 and Psyr_4872 are separated by 664 nucleotides
Psyr_4870: Psyr_4870 - hypothetical protein, at 5,780,858 to 5,781,937
_4870
Psyr_4871: Psyr_4871 - hypothetical protein, at 5,782,166 to 5,783,257
_4871
Psyr_4872: Psyr_4872 - conserved hypothetical protein, at 5,783,922 to 5,785,244
_4872
Position (kb) 5782
5783
5784 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5781.181 kb on + strand, within Psyr_4870 at 5781.187 kb on + strand, within Psyr_4870 at 5781.188 kb on - strand, within Psyr_4870 at 5781.336 kb on - strand, within Psyr_4870 at 5781.377 kb on + strand, within Psyr_4870 at 5781.378 kb on - strand, within Psyr_4870 at 5781.392 kb on + strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.401 kb on - strand, within Psyr_4870 at 5781.402 kb on + strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.403 kb on - strand, within Psyr_4870 at 5781.460 kb on - strand, within Psyr_4870 at 5781.529 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.531 kb on + strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.559 kb on - strand, within Psyr_4870 at 5781.648 kb on + strand, within Psyr_4870 at 5781.649 kb on - strand, within Psyr_4870 at 5781.762 kb on - strand, within Psyr_4870 at 5781.897 kb on + strand at 5781.904 kb on - strand at 5781.904 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.953 kb on - strand at 5781.993 kb on + strand at 5781.993 kb on + strand at 5782.009 kb on + strand at 5782.009 kb on + strand at 5782.013 kb on + strand at 5782.013 kb on + strand at 5782.080 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.095 kb on + strand at 5782.096 kb on - strand at 5782.096 kb on - strand at 5782.101 kb on + strand at 5782.101 kb on + strand at 5782.102 kb on - strand at 5782.102 kb on - strand at 5782.124 kb on + strand at 5782.125 kb on - strand at 5782.125 kb on - strand at 5782.171 kb on + strand at 5782.172 kb on - strand at 5782.216 kb on - strand at 5782.295 kb on - strand, within Psyr_4871 at 5782.303 kb on + strand, within Psyr_4871 at 5782.304 kb on - strand, within Psyr_4871 at 5782.304 kb on - strand, within Psyr_4871 at 5782.341 kb on - strand, within Psyr_4871 at 5782.347 kb on + strand, within Psyr_4871 at 5782.361 kb on + strand, within Psyr_4871 at 5782.436 kb on - strand, within Psyr_4871 at 5782.468 kb on + strand, within Psyr_4871 at 5782.468 kb on + strand, within Psyr_4871 at 5782.468 kb on + strand, within Psyr_4871 at 5782.469 kb on - strand, within Psyr_4871 at 5782.469 kb on - strand, within Psyr_4871 at 5782.516 kb on + strand, within Psyr_4871 at 5782.516 kb on + strand, within Psyr_4871 at 5782.516 kb on + strand, within Psyr_4871 at 5782.517 kb on - strand, within Psyr_4871 at 5782.517 kb on - strand, within Psyr_4871 at 5782.522 kb on + strand, within Psyr_4871 at 5782.522 kb on + strand, within Psyr_4871 at 5782.523 kb on - strand, within Psyr_4871 at 5782.553 kb on + strand, within Psyr_4871 at 5782.558 kb on + strand, within Psyr_4871 at 5782.558 kb on + strand, within Psyr_4871 at 5782.558 kb on + strand, within Psyr_4871 at 5782.558 kb on + strand, within Psyr_4871 at 5782.558 kb on + strand, within Psyr_4871 at 5782.559 kb on - strand, within Psyr_4871 at 5782.559 kb on - strand, within Psyr_4871 at 5782.559 kb on - strand, within Psyr_4871 at 5782.570 kb on + strand, within Psyr_4871 at 5782.571 kb on - strand, within Psyr_4871 at 5782.571 kb on - strand, within Psyr_4871 at 5782.571 kb on - strand, within Psyr_4871 at 5782.571 kb on - strand, within Psyr_4871 at 5782.575 kb on - strand, within Psyr_4871 at 5782.586 kb on + strand, within Psyr_4871 at 5782.600 kb on + strand, within Psyr_4871 at 5782.600 kb on + strand, within Psyr_4871 at 5782.600 kb on + strand, within Psyr_4871 at 5782.600 kb on + strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.601 kb on - strand, within Psyr_4871 at 5782.661 kb on - strand, within Psyr_4871 at 5782.661 kb on - strand, within Psyr_4871 at 5782.666 kb on + strand, within Psyr_4871 at 5782.667 kb on - strand, within Psyr_4871 at 5782.667 kb on - strand, within Psyr_4871 at 5782.667 kb on - strand, within Psyr_4871 at 5782.667 kb on - strand, within Psyr_4871 at 5782.667 kb on - strand, within Psyr_4871 at 5782.710 kb on - strand, within Psyr_4871 at 5782.710 kb on - strand, within Psyr_4871 at 5782.730 kb on - strand, within Psyr_4871 at 5782.730 kb on - strand, within Psyr_4871 at 5782.730 kb on - strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.851 kb on + strand, within Psyr_4871 at 5782.878 kb on + strand, within Psyr_4871 at 5782.878 kb on + strand, within Psyr_4871 at 5782.879 kb on - strand, within Psyr_4871 at 5782.959 kb on + strand, within Psyr_4871 at 5782.960 kb on - strand, within Psyr_4871 at 5782.960 kb on - strand, within Psyr_4871 at 5782.968 kb on + strand, within Psyr_4871 at 5782.968 kb on + strand, within Psyr_4871 at 5782.969 kb on - strand, within Psyr_4871 at 5782.969 kb on - strand, within Psyr_4871 at 5782.993 kb on + strand, within Psyr_4871 at 5782.993 kb on + strand, within Psyr_4871 at 5782.994 kb on - strand, within Psyr_4871 at 5783.154 kb on + strand at 5783.223 kb on + strand at 5783.223 kb on + strand at 5783.224 kb on - strand at 5783.224 kb on - strand at 5783.274 kb on - strand at 5783.274 kb on - strand at 5783.330 kb on + strand at 5783.330 kb on + strand at 5783.330 kb on + strand at 5783.330 kb on + strand at 5783.334 kb on + strand at 5783.334 kb on + strand at 5783.334 kb on + strand at 5783.334 kb on + strand at 5783.376 kb on + strand at 5783.376 kb on + strand at 5783.376 kb on + strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.377 kb on - strand at 5783.463 kb on + strand at 5783.463 kb on + strand at 5783.463 kb on + strand at 5783.463 kb on + strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.464 kb on - strand at 5783.470 kb on + strand at 5783.470 kb on + strand at 5783.470 kb on + strand at 5783.575 kb on + strand at 5783.575 kb on + strand at 5783.576 kb on - strand at 5783.576 kb on - strand at 5783.576 kb on - strand at 5783.576 kb on - strand at 5783.682 kb on + strand at 5783.682 kb on + strand at 5783.682 kb on + strand at 5783.683 kb on - strand at 5783.683 kb on - strand at 5783.683 kb on - strand at 5783.704 kb on + strand at 5783.704 kb on + strand at 5783.704 kb on + strand at 5783.704 kb on + strand at 5783.704 kb on + strand at 5783.704 kb on + strand at 5783.705 kb on - strand at 5783.705 kb on - strand at 5783.705 kb on - strand at 5783.705 kb on - strand at 5783.705 kb on - strand at 5783.705 kb on - strand at 5783.737 kb on - strand at 5783.903 kb on - strand at 5783.912 kb on - strand at 5783.912 kb on - strand at 5783.912 kb on - strand at 5783.967 kb on - strand at 5784.018 kb on - strand at 5784.020 kb on + strand at 5784.021 kb on - strand at 5784.024 kb on - strand at 5784.026 kb on + strand at 5784.039 kb on + strand at 5784.039 kb on + strand at 5784.111 kb on + strand, within Psyr_4872 at 5784.111 kb on + strand, within Psyr_4872 at 5784.112 kb on - strand, within Psyr_4872 at 5784.140 kb on + strand, within Psyr_4872 at 5784.140 kb on + strand, within Psyr_4872 at 5784.140 kb on + strand, within Psyr_4872 at 5784.140 kb on + strand, within Psyr_4872 at 5784.140 kb on + strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.141 kb on - strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.142 kb on + strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.143 kb on - strand, within Psyr_4872 at 5784.217 kb on - strand, within Psyr_4872 at 5784.252 kb on + strand, within Psyr_4872
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,781,181 + Psyr_4870 0.30 -2.7 5,781,187 + Psyr_4870 0.30 +2.9 5,781,188 - Psyr_4870 0.31 -1.9 5,781,336 - Psyr_4870 0.44 -2.8 5,781,377 + Psyr_4870 0.48 +1.7 5,781,378 - Psyr_4870 0.48 -1.9 5,781,392 + Psyr_4870 0.49 -4.8 5,781,401 - Psyr_4870 0.50 +1.7 5,781,401 - Psyr_4870 0.50 -4.1 5,781,402 + Psyr_4870 0.50 -4.5 5,781,403 - Psyr_4870 0.50 -1.8 5,781,403 - Psyr_4870 0.50 -0.7 5,781,403 - Psyr_4870 0.50 -4.8 5,781,460 - Psyr_4870 0.56 +1.1 5,781,529 + Psyr_4870 0.62 -3.8 5,781,531 + Psyr_4870 0.62 -1.7 5,781,531 + Psyr_4870 0.62 +1.7 5,781,531 + Psyr_4870 0.62 -3.7 5,781,531 + Psyr_4870 0.62 +1.1 5,781,531 + Psyr_4870 0.62 -2.5 5,781,559 - Psyr_4870 0.65 -0.9 5,781,559 - Psyr_4870 0.65 +0.1 5,781,648 + Psyr_4870 0.73 +0.1 5,781,649 - Psyr_4870 0.73 +1.4 5,781,762 - Psyr_4870 0.84 -4.6 5,781,897 + -2.5 5,781,904 - -2.2 5,781,904 - -3.7 5,781,953 - -0.9 5,781,953 - +0.1 5,781,953 - +0.1 5,781,953 - -0.1 5,781,953 - +2.6 5,781,953 - +1.2 5,781,953 - +0.1 5,781,953 - -0.9 5,781,993 + -2.1 5,781,993 + -3.2 5,782,009 + -2.7 5,782,009 + -3.3 5,782,013 + -2.2 5,782,013 + +0.1 5,782,080 + +2.4 5,782,095 + -1.4 5,782,095 + -1.1 5,782,095 + -1.9 5,782,095 + +3.2 5,782,095 + -1.8 5,782,095 + -3.6 5,782,095 + +2.1 5,782,095 + +0.1 5,782,095 + -0.7 5,782,096 - -1.1 5,782,096 - +0.1 5,782,101 + +1.1 5,782,101 + -0.6 5,782,102 - +0.2 5,782,102 - -1.3 5,782,124 + +3.4 5,782,125 - -2.5 5,782,125 - -1.3 5,782,171 + +0.1 5,782,172 - -1.6 5,782,216 - -0.1 5,782,295 - Psyr_4871 0.12 +1.0 5,782,303 + Psyr_4871 0.13 -3.6 5,782,304 - Psyr_4871 0.13 -1.8 5,782,304 - Psyr_4871 0.13 +1.7 5,782,341 - Psyr_4871 0.16 +2.4 5,782,347 + Psyr_4871 0.17 +0.1 5,782,361 + Psyr_4871 0.18 +1.7 5,782,436 - Psyr_4871 0.25 +3.2 5,782,468 + Psyr_4871 0.28 +4.1 5,782,468 + Psyr_4871 0.28 -1.2 5,782,468 + Psyr_4871 0.28 -2.0 5,782,469 - Psyr_4871 0.28 -3.4 5,782,469 - Psyr_4871 0.28 +0.4 5,782,516 + Psyr_4871 0.32 +4.0 5,782,516 + Psyr_4871 0.32 +0.4 5,782,516 + Psyr_4871 0.32 +3.5 5,782,517 - Psyr_4871 0.32 -3.6 5,782,517 - Psyr_4871 0.32 +2.1 5,782,522 + Psyr_4871 0.33 +4.7 5,782,522 + Psyr_4871 0.33 +2.4 5,782,523 - Psyr_4871 0.33 -2.5 5,782,553 + Psyr_4871 0.35 -3.9 5,782,558 + Psyr_4871 0.36 -2.2 5,782,558 + Psyr_4871 0.36 -1.4 5,782,558 + Psyr_4871 0.36 +0.6 5,782,558 + Psyr_4871 0.36 -1.3 5,782,558 + Psyr_4871 0.36 +0.2 5,782,559 - Psyr_4871 0.36 +2.1 5,782,559 - Psyr_4871 0.36 -1.6 5,782,559 - Psyr_4871 0.36 -0.3 5,782,570 + Psyr_4871 0.37 -1.8 5,782,571 - Psyr_4871 0.37 +1.7 5,782,571 - Psyr_4871 0.37 +2.9 5,782,571 - Psyr_4871 0.37 -3.7 5,782,571 - Psyr_4871 0.37 -0.8 5,782,575 - Psyr_4871 0.37 -3.6 5,782,586 + Psyr_4871 0.38 -2.1 5,782,600 + Psyr_4871 0.40 -3.6 5,782,600 + Psyr_4871 0.40 +1.1 5,782,600 + Psyr_4871 0.40 +1.7 5,782,600 + Psyr_4871 0.40 -1.2 5,782,601 - Psyr_4871 0.40 +3.1 5,782,601 - Psyr_4871 0.40 -1.5 5,782,601 - Psyr_4871 0.40 +0.8 5,782,601 - Psyr_4871 0.40 +3.7 5,782,601 - Psyr_4871 0.40 +3.8 5,782,601 - Psyr_4871 0.40 -2.2 5,782,661 - Psyr_4871 0.45 -0.8 5,782,661 - Psyr_4871 0.45 -0.2 5,782,666 + Psyr_4871 0.46 +1.1 5,782,667 - Psyr_4871 0.46 -0.8 5,782,667 - Psyr_4871 0.46 +3.1 5,782,667 - Psyr_4871 0.46 -0.1 5,782,667 - Psyr_4871 0.46 -3.4 5,782,667 - Psyr_4871 0.46 -0.3 5,782,710 - Psyr_4871 0.50 +2.1 5,782,710 - Psyr_4871 0.50 -2.5 5,782,730 - Psyr_4871 0.52 -4.8 5,782,730 - Psyr_4871 0.52 -3.1 5,782,730 - Psyr_4871 0.52 -1.6 5,782,851 + Psyr_4871 0.63 -1.3 5,782,851 + Psyr_4871 0.63 -1.2 5,782,851 + Psyr_4871 0.63 -2.7 5,782,851 + Psyr_4871 0.63 +0.1 5,782,851 + Psyr_4871 0.63 +2.5 5,782,851 + Psyr_4871 0.63 -3.8 5,782,878 + Psyr_4871 0.65 +2.4 5,782,878 + Psyr_4871 0.65 +3.1 5,782,879 - Psyr_4871 0.65 -0.8 5,782,959 + Psyr_4871 0.73 +1.5 5,782,960 - Psyr_4871 0.73 +0.7 5,782,960 - Psyr_4871 0.73 -1.8 5,782,968 + Psyr_4871 0.73 -1.2 5,782,968 + Psyr_4871 0.73 -2.3 5,782,969 - Psyr_4871 0.74 -2.3 5,782,969 - Psyr_4871 0.74 +3.4 5,782,993 + Psyr_4871 0.76 -1.2 5,782,993 + Psyr_4871 0.76 +1.1 5,782,994 - Psyr_4871 0.76 -1.9 5,783,154 + -2.3 5,783,223 + -1.2 5,783,223 + -1.6 5,783,224 - -0.4 5,783,224 - -2.0 5,783,274 - -1.9 5,783,274 - +0.1 5,783,330 + +1.0 5,783,330 + -0.9 5,783,330 + +2.4 5,783,330 + +0.5 5,783,334 + -0.4 5,783,334 + -2.4 5,783,334 + -2.2 5,783,334 + +1.1 5,783,376 + -3.2 5,783,376 + +3.5 5,783,376 + +2.7 5,783,377 - +2.5 5,783,377 - -0.9 5,783,377 - -0.9 5,783,377 - -0.8 5,783,377 - -1.2 5,783,377 - +0.2 5,783,377 - -1.1 5,783,377 - -1.4 5,783,463 + +1.1 5,783,463 + -0.6 5,783,463 + +1.7 5,783,463 + -2.7 5,783,464 - -1.7 5,783,464 - +0.2 5,783,464 - -1.4 5,783,464 - +2.4 5,783,464 - -0.3 5,783,464 - -1.0 5,783,464 - -0.7 5,783,464 - +1.0 5,783,464 - -3.8 5,783,470 + +2.1 5,783,470 + -1.4 5,783,470 + -3.2 5,783,575 + -3.8 5,783,575 + +0.8 5,783,576 - +3.2 5,783,576 - -0.9 5,783,576 - -0.2 5,783,576 - -3.2 5,783,682 + -3.6 5,783,682 + +2.9 5,783,682 + -3.6 5,783,683 - -0.3 5,783,683 - +3.1 5,783,683 - +2.6 5,783,704 + -1.5 5,783,704 + -0.9 5,783,704 + -4.1 5,783,704 + -0.1 5,783,704 + -2.2 5,783,704 + -1.1 5,783,705 - +3.8 5,783,705 - -0.7 5,783,705 - +0.1 5,783,705 - +0.3 5,783,705 - -2.3 5,783,705 - +1.4 5,783,737 - +0.1 5,783,903 - -0.9 5,783,912 - -3.2 5,783,912 - +0.1 5,783,912 - -0.5 5,783,967 - +1.0 5,784,018 - +3.2 5,784,020 + +0.1 5,784,021 - -2.3 5,784,024 - -1.0 5,784,026 + -1.6 5,784,039 + -3.6 5,784,039 + +1.1 5,784,111 + Psyr_4872 0.14 -3.5 5,784,111 + Psyr_4872 0.14 -5.0 5,784,112 - Psyr_4872 0.14 -1.8 5,784,140 + Psyr_4872 0.16 +2.7 5,784,140 + Psyr_4872 0.16 +3.4 5,784,140 + Psyr_4872 0.16 +1.7 5,784,140 + Psyr_4872 0.16 +0.1 5,784,140 + Psyr_4872 0.16 -4.2 5,784,141 - Psyr_4872 0.17 +3.7 5,784,141 - Psyr_4872 0.17 +2.4 5,784,141 - Psyr_4872 0.17 -1.0 5,784,141 - Psyr_4872 0.17 +1.7 5,784,141 - Psyr_4872 0.17 +2.1 5,784,141 - Psyr_4872 0.17 -0.8 5,784,141 - Psyr_4872 0.17 +1.1 5,784,142 + Psyr_4872 0.17 -4.7 5,784,142 + Psyr_4872 0.17 -2.1 5,784,142 + Psyr_4872 0.17 -4.0 5,784,142 + Psyr_4872 0.17 -1.3 5,784,142 + Psyr_4872 0.17 -2.6 5,784,142 + Psyr_4872 0.17 +0.6 5,784,143 - Psyr_4872 0.17 -0.7 5,784,143 - Psyr_4872 0.17 -2.7 5,784,143 - Psyr_4872 0.17 -1.0 5,784,143 - Psyr_4872 0.17 -2.9 5,784,143 - Psyr_4872 0.17 +4.2 5,784,143 - Psyr_4872 0.17 +1.0 5,784,143 - Psyr_4872 0.17 -0.6 5,784,217 - Psyr_4872 0.22 -2.7 5,784,252 + Psyr_4872 0.25 +1.7
Or see this region's nucleotide sequence