Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4856

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4854 and Psyr_4855 are separated by 75 nucleotidesPsyr_4855 and Psyr_4856 are separated by 51 nucleotidesPsyr_4856 and Psyr_4857 overlap by 4 nucleotides Psyr_4854: Psyr_4854 - 2OG-Fe(II) oxygenase superfamily, at 5,761,281 to 5,761,982 _4854 Psyr_4855: Psyr_4855 - conserved hypothetical protein, at 5,762,058 to 5,762,816 _4855 Psyr_4856: Psyr_4856 - conserved hypothetical protein, at 5,762,868 to 5,763,059 _4856 Psyr_4857: Psyr_4857 - conserved hypothetical protein, at 5,763,056 to 5,763,997 _4857 Position (kb) 5762 5763 5764Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 5761.900 kb on - strand, within Psyr_4854at 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.916 kb on + strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.917 kb on - strandat 5761.919 kb on + strandat 5761.919 kb on + strandat 5761.920 kb on - strandat 5761.925 kb on + strandat 5761.926 kb on - strandat 5761.950 kb on + strandat 5761.950 kb on + strandat 5761.950 kb on + strandat 5761.951 kb on - strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.952 kb on + strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.953 kb on - strandat 5761.999 kb on + strandat 5761.999 kb on + strandat 5761.999 kb on + strandat 5761.999 kb on + strandat 5762.000 kb on - strandat 5762.000 kb on - strandat 5762.118 kb on + strandat 5762.118 kb on + strandat 5762.118 kb on + strandat 5762.118 kb on + strandat 5762.118 kb on + strandat 5762.130 kb on + strandat 5762.130 kb on + strandat 5762.130 kb on + strandat 5762.130 kb on + strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.131 kb on - strandat 5762.200 kb on - strand, within Psyr_4855at 5762.226 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.661 kb on + strand, within Psyr_4855at 5762.662 kb on - strand, within Psyr_4855at 5762.662 kb on - strand, within Psyr_4855at 5762.662 kb on - strand, within Psyr_4855at 5762.662 kb on - strand, within Psyr_4855at 5762.662 kb on - strand, within Psyr_4855at 5762.736 kb on + strand, within Psyr_4855at 5762.736 kb on + strand, within Psyr_4855at 5762.740 kb on - strand, within Psyr_4855at 5762.815 kb on - strandat 5762.815 kb on - strandat 5762.867 kb on + strandat 5762.867 kb on + strandat 5762.867 kb on + strandat 5762.867 kb on + strandat 5762.867 kb on + strandat 5762.868 kb on - strandat 5762.905 kb on + strand, within Psyr_4856at 5762.905 kb on + strand, within Psyr_4856at 5762.905 kb on + strand, within Psyr_4856at 5762.906 kb on - strand, within Psyr_4856at 5762.906 kb on - strand, within Psyr_4856at 5762.906 kb on - strand, within Psyr_4856at 5763.022 kb on + strand, within Psyr_4856at 5763.023 kb on - strand, within Psyr_4856at 5763.058 kb on - strandat 5763.423 kb on + strand, within Psyr_4857at 5763.423 kb on + strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.424 kb on - strand, within Psyr_4857at 5763.741 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.759 kb on + strand, within Psyr_4857at 5763.760 kb on - strand, within Psyr_4857at 5763.760 kb on - strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.809 kb on + strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.810 kb on - strand, within Psyr_4857at 5763.864 kb on - strand, within Psyr_4857at 5763.897 kb on + strand, within Psyr_4857at 5763.909 kb on + strandat 5763.910 kb on - strandat 5764.037 kb on + strandat 5764.043 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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5,761,900 - Psyr_4854 0.88 +2.4
5,761,916 + -3.3
5,761,916 + +2.6
5,761,916 + -2.4
5,761,916 + -1.6
5,761,916 + -1.8
5,761,916 + -1.7
5,761,916 + +1.1
5,761,917 - +2.4
5,761,917 - -2.3
5,761,917 - -1.6
5,761,917 - -1.4
5,761,917 - -1.4
5,761,917 - +0.2
5,761,917 - -1.2
5,761,917 - +0.8
5,761,919 + -0.4
5,761,919 + -5.0
5,761,920 - +1.1
5,761,925 + -1.6
5,761,926 - +2.6
5,761,950 + -0.8
5,761,950 + +0.4
5,761,950 + -2.3
5,761,951 - +3.8
5,761,952 + +1.6
5,761,952 + -2.8
5,761,952 + +0.6
5,761,952 + +3.6
5,761,952 + +0.6
5,761,952 + -0.8
5,761,952 + +3.2
5,761,953 - +1.1
5,761,953 - +0.8
5,761,953 - +0.9
5,761,953 - +0.1
5,761,953 - -3.8
5,761,953 - +4.4
5,761,953 - -0.5
5,761,953 - -1.1
5,761,999 + -1.7
5,761,999 + -1.5
5,761,999 + -2.0
5,761,999 + -1.3
5,762,000 - +3.5
5,762,000 - -3.9
5,762,118 + +2.9
5,762,118 + -1.3
5,762,118 + -2.1
5,762,118 + -1.3
5,762,118 + +4.5
5,762,130 + -1.3
5,762,130 + -3.9
5,762,130 + +3.1
5,762,130 + -2.1
5,762,131 - -2.5
5,762,131 - -1.8
5,762,131 - -1.9
5,762,131 - +3.4
5,762,131 - +0.1
5,762,131 - -0.9
5,762,131 - -2.3
5,762,200 - Psyr_4855 0.19 +2.6
5,762,226 + Psyr_4855 0.22 +0.1
5,762,661 + Psyr_4855 0.79 +2.9
5,762,661 + Psyr_4855 0.79 -0.4
5,762,661 + Psyr_4855 0.79 +0.7
5,762,661 + Psyr_4855 0.79 -5.5
5,762,661 + Psyr_4855 0.79 +2.1
5,762,661 + Psyr_4855 0.79 +0.1
5,762,661 + Psyr_4855 0.79 -2.2
5,762,661 + Psyr_4855 0.79 -0.1
5,762,661 + Psyr_4855 0.79 +1.1
5,762,662 - Psyr_4855 0.80 +0.5
5,762,662 - Psyr_4855 0.80 +2.4
5,762,662 - Psyr_4855 0.80 +4.3
5,762,662 - Psyr_4855 0.80 +2.1
5,762,662 - Psyr_4855 0.80 -1.8
5,762,736 + Psyr_4855 0.89 +0.4
5,762,736 + Psyr_4855 0.89 -0.3
5,762,740 - Psyr_4855 0.90 -0.6
5,762,815 - -2.6
5,762,815 - +3.2
5,762,867 + +2.1
5,762,867 + +1.6
5,762,867 + -1.1
5,762,867 + -0.4
5,762,867 + -0.7
5,762,868 - -2.1
5,762,905 + Psyr_4856 0.19 -1.6
5,762,905 + Psyr_4856 0.19 -2.9
5,762,905 + Psyr_4856 0.19 -1.4
5,762,906 - Psyr_4856 0.20 -1.5
5,762,906 - Psyr_4856 0.20 -5.6
5,762,906 - Psyr_4856 0.20 -2.6
5,763,022 + Psyr_4856 0.80 -1.4
5,763,023 - Psyr_4856 0.81 -1.5
5,763,058 - -0.3
5,763,423 + Psyr_4857 0.39 -1.1
5,763,423 + Psyr_4857 0.39 +0.1
5,763,424 - Psyr_4857 0.39 -0.4
5,763,424 - Psyr_4857 0.39 +0.4
5,763,424 - Psyr_4857 0.39 -0.8
5,763,741 + Psyr_4857 0.73 +2.4
5,763,759 + Psyr_4857 0.75 +2.1
5,763,759 + Psyr_4857 0.75 -3.2
5,763,759 + Psyr_4857 0.75 +4.6
5,763,759 + Psyr_4857 0.75 -1.8
5,763,759 + Psyr_4857 0.75 -1.9
5,763,759 + Psyr_4857 0.75 +0.1
5,763,760 - Psyr_4857 0.75 -2.0
5,763,760 - Psyr_4857 0.75 -2.7
5,763,809 + Psyr_4857 0.80 -1.5
5,763,809 + Psyr_4857 0.80 -2.5
5,763,809 + Psyr_4857 0.80 -1.6
5,763,809 + Psyr_4857 0.80 +1.1
5,763,809 + Psyr_4857 0.80 -2.2
5,763,810 - Psyr_4857 0.80 -0.3
5,763,810 - Psyr_4857 0.80 -0.4
5,763,810 - Psyr_4857 0.80 +4.4
5,763,810 - Psyr_4857 0.80 +1.6
5,763,864 - Psyr_4857 0.86 -1.0
5,763,897 + Psyr_4857 0.89 -0.8
5,763,909 + -2.7
5,763,910 - -0.9
5,764,037 + -1.3
5,764,043 + +2.1

Or see this region's nucleotide sequence