Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4807 and Psyr_4808 are separated by 445 nucleotides Psyr_4808 and Psyr_4809 are separated by 202 nucleotides Psyr_4809 and Psyr_4810 are separated by 278 nucleotides
Psyr_4807: Psyr_4807 - outer membrane porin, at 5,701,892 to 5,703,217
_4807
Psyr_4808: Psyr_4808 - conserved hypothetical protein, at 5,703,663 to 5,703,926
_4808
Psyr_4809: Psyr_4809 - conserved hypothetical protein, at 5,704,129 to 5,704,458
_4809
Psyr_4810: Psyr_4810 - sodium/proton antiporter, CPA1 family, at 5,704,737 to 5,705,996
_4810
Position (kb) 5703
5704 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5702.841 kb on + strand, within Psyr_4807 at 5702.841 kb on + strand, within Psyr_4807 at 5702.842 kb on - strand, within Psyr_4807 at 5703.030 kb on + strand, within Psyr_4807 at 5703.030 kb on + strand, within Psyr_4807 at 5703.081 kb on + strand, within Psyr_4807 at 5703.081 kb on + strand, within Psyr_4807 at 5703.082 kb on - strand, within Psyr_4807 at 5703.082 kb on - strand, within Psyr_4807 at 5703.082 kb on - strand, within Psyr_4807 at 5703.082 kb on - strand, within Psyr_4807 at 5703.089 kb on - strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.217 kb on + strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.218 kb on - strand at 5703.248 kb on - strand at 5703.248 kb on - strand at 5703.271 kb on + strand at 5703.274 kb on - strand at 5703.320 kb on - strand at 5703.320 kb on - strand at 5703.320 kb on - strand at 5703.343 kb on - strand at 5703.348 kb on + strand at 5703.348 kb on + strand at 5703.348 kb on + strand at 5703.349 kb on - strand at 5703.349 kb on - strand at 5703.378 kb on - strand at 5703.385 kb on + strand at 5703.610 kb on - strand at 5703.645 kb on + strand at 5703.645 kb on + strand at 5703.646 kb on - strand at 5703.646 kb on - strand at 5703.744 kb on + strand, within Psyr_4808 at 5703.825 kb on + strand, within Psyr_4808 at 5703.826 kb on - strand, within Psyr_4808 at 5703.908 kb on + strand at 5703.908 kb on + strand at 5703.908 kb on + strand at 5703.909 kb on - strand at 5703.909 kb on - strand at 5703.911 kb on + strand at 5703.911 kb on + strand at 5703.989 kb on + strand at 5703.989 kb on + strand at 5703.990 kb on - strand at 5704.017 kb on + strand at 5704.017 kb on + strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.018 kb on - strand at 5704.024 kb on - strand at 5704.024 kb on - strand at 5704.056 kb on + strand at 5704.057 kb on - strand at 5704.151 kb on + strand at 5704.151 kb on + strand at 5704.151 kb on + strand at 5704.152 kb on - strand at 5704.152 kb on - strand at 5704.152 kb on - strand at 5704.193 kb on - strand, within Psyr_4809 at 5704.219 kb on - strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.255 kb on + strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.256 kb on - strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.297 kb on + strand, within Psyr_4809 at 5704.303 kb on + strand, within Psyr_4809 at 5704.304 kb on - strand, within Psyr_4809 at 5704.387 kb on + strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.388 kb on - strand, within Psyr_4809 at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.665 kb on + strand at 5704.665 kb on + strand at 5704.665 kb on + strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.666 kb on - strand at 5704.760 kb on + strand at 5704.761 kb on - strand at 5704.761 kb on - strand at 5704.761 kb on - strand at 5704.785 kb on + strand at 5704.785 kb on + strand at 5704.794 kb on + strand at 5704.794 kb on + strand at 5704.795 kb on - strand at 5704.795 kb on - strand at 5704.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,702,841 + Psyr_4807 0.72 -0.8 5,702,841 + Psyr_4807 0.72 +0.4 5,702,842 - Psyr_4807 0.72 -2.3 5,703,030 + Psyr_4807 0.86 -0.1 5,703,030 + Psyr_4807 0.86 -1.0 5,703,081 + Psyr_4807 0.90 -0.5 5,703,081 + Psyr_4807 0.90 -1.8 5,703,082 - Psyr_4807 0.90 +0.5 5,703,082 - Psyr_4807 0.90 +0.8 5,703,082 - Psyr_4807 0.90 -0.3 5,703,082 - Psyr_4807 0.90 -0.8 5,703,089 - +0.1 5,703,217 + -1.1 5,703,217 + -3.2 5,703,217 + -0.1 5,703,217 + +2.3 5,703,217 + +2.6 5,703,217 + +0.5 5,703,217 + -2.1 5,703,217 + -2.0 5,703,217 + +1.6 5,703,217 + -2.5 5,703,217 + +3.5 5,703,217 + -2.0 5,703,217 + -1.3 5,703,217 + -0.3 5,703,217 + +0.0 5,703,217 + -2.1 5,703,218 - +0.2 5,703,218 - +3.9 5,703,218 - +2.3 5,703,218 - +3.2 5,703,218 - +3.6 5,703,218 - -1.0 5,703,218 - -1.3 5,703,218 - +0.8 5,703,218 - +2.8 5,703,218 - -1.1 5,703,218 - -2.6 5,703,218 - -0.7 5,703,218 - -2.4 5,703,248 - +1.0 5,703,248 - +2.3 5,703,271 + -0.6 5,703,274 - -1.6 5,703,320 - -1.4 5,703,320 - -2.0 5,703,320 - +0.9 5,703,343 - -1.0 5,703,348 + -4.0 5,703,348 + +1.0 5,703,348 + -2.0 5,703,349 - -2.0 5,703,349 - +1.0 5,703,378 - -0.5 5,703,385 + +4.1 5,703,610 - +1.8 5,703,645 + +0.0 5,703,645 + +0.6 5,703,646 - -2.9 5,703,646 - +0.0 5,703,744 + Psyr_4808 0.31 -0.6 5,703,825 + Psyr_4808 0.61 -1.3 5,703,826 - Psyr_4808 0.62 -1.2 5,703,908 + +0.0 5,703,908 + +2.6 5,703,908 + -0.5 5,703,909 - +2.6 5,703,909 - +1.4 5,703,911 + +1.5 5,703,911 + +0.8 5,703,989 + +0.4 5,703,989 + +2.6 5,703,990 - -1.1 5,704,017 + +0.0 5,704,017 + +1.6 5,704,018 - -0.5 5,704,018 - +3.2 5,704,018 - +1.0 5,704,018 - +2.1 5,704,018 - +2.0 5,704,018 - -1.9 5,704,024 - -4.0 5,704,024 - -3.0 5,704,056 + -0.0 5,704,057 - -0.7 5,704,151 + -2.2 5,704,151 + -0.2 5,704,151 + +3.5 5,704,152 - -2.4 5,704,152 - +2.6 5,704,152 - +2.1 5,704,193 - Psyr_4809 0.19 -1.8 5,704,219 - Psyr_4809 0.27 +4.1 5,704,255 + Psyr_4809 0.38 +1.2 5,704,255 + Psyr_4809 0.38 +0.1 5,704,255 + Psyr_4809 0.38 -1.5 5,704,255 + Psyr_4809 0.38 +4.7 5,704,256 - Psyr_4809 0.38 +0.0 5,704,256 - Psyr_4809 0.38 +1.6 5,704,256 - Psyr_4809 0.38 -0.7 5,704,256 - Psyr_4809 0.38 +3.3 5,704,256 - Psyr_4809 0.38 +2.8 5,704,256 - Psyr_4809 0.38 -2.1 5,704,297 + Psyr_4809 0.51 -1.5 5,704,297 + Psyr_4809 0.51 +2.3 5,704,297 + Psyr_4809 0.51 -0.4 5,704,297 + Psyr_4809 0.51 +4.1 5,704,297 + Psyr_4809 0.51 +1.0 5,704,297 + Psyr_4809 0.51 +0.1 5,704,297 + Psyr_4809 0.51 -4.5 5,704,303 + Psyr_4809 0.53 +2.0 5,704,304 - Psyr_4809 0.53 -1.2 5,704,387 + Psyr_4809 0.78 -1.5 5,704,388 - Psyr_4809 0.78 -1.6 5,704,388 - Psyr_4809 0.78 +0.2 5,704,388 - Psyr_4809 0.78 -1.8 5,704,388 - Psyr_4809 0.78 +1.3 5,704,490 + +0.6 5,704,490 + -1.8 5,704,491 - +2.6 5,704,491 - -1.0 5,704,491 - -2.0 5,704,491 - +1.1 5,704,665 + -0.3 5,704,665 + +4.4 5,704,665 + -1.1 5,704,666 - +3.3 5,704,666 - +0.2 5,704,666 - -1.4 5,704,666 - -0.5 5,704,666 - +1.4 5,704,760 + +4.0 5,704,761 - -1.2 5,704,761 - +4.4 5,704,761 - +0.4 5,704,785 + -1.7 5,704,785 + -1.7 5,704,794 + -2.0 5,704,794 + -1.1 5,704,795 - -1.0 5,704,795 - +0.0 5,704,795 - -1.6
Or see this region's nucleotide sequence