Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4718 and Psyr_4719 are separated by 31 nucleotides Psyr_4719 and Psyr_4720 are separated by 319 nucleotides
Psyr_4718: Psyr_4718 - glutathione-independent formaldehyde dehydrogenase, at 5,591,208 to 5,592,407
_4718
Psyr_4719: Psyr_4719 - hypothetical protein, at 5,592,439 to 5,593,485
_4719
Psyr_4720: Psyr_4720 - conserved domain protein, at 5,593,805 to 5,594,821
_4720
Position (kb) 5592
5593
5594 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.577 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.583 kb on + strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.584 kb on - strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.622 kb on + strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.623 kb on - strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.778 kb on + strand, within Psyr_4718 at 5591.779 kb on - strand, within Psyr_4718 at 5591.996 kb on - strand, within Psyr_4718 at 5591.996 kb on - strand, within Psyr_4718 at 5592.076 kb on + strand, within Psyr_4718 at 5592.077 kb on - strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.114 kb on + strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.115 kb on - strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.237 kb on + strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.238 kb on - strand, within Psyr_4718 at 5592.292 kb on + strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.293 kb on - strand at 5592.405 kb on + strand at 5592.419 kb on - strand at 5592.440 kb on + strand at 5592.440 kb on + strand at 5592.440 kb on + strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.441 kb on - strand at 5592.596 kb on + strand, within Psyr_4719 at 5592.596 kb on + strand, within Psyr_4719 at 5592.612 kb on + strand, within Psyr_4719 at 5592.612 kb on + strand, within Psyr_4719 at 5592.614 kb on + strand, within Psyr_4719 at 5592.614 kb on + strand, within Psyr_4719 at 5592.642 kb on - strand, within Psyr_4719 at 5592.712 kb on - strand, within Psyr_4719 at 5592.724 kb on - strand, within Psyr_4719 at 5592.844 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.848 kb on - strand, within Psyr_4719 at 5592.931 kb on + strand, within Psyr_4719 at 5592.972 kb on + strand, within Psyr_4719 at 5593.022 kb on + strand, within Psyr_4719 at 5593.071 kb on + strand at 5593.093 kb on - strand, within Psyr_4719 at 5593.093 kb on - strand, within Psyr_4719 at 5593.121 kb on + strand, within Psyr_4719 at 5593.121 kb on + strand, within Psyr_4719 at 5593.122 kb on - strand, within Psyr_4719 at 5593.122 kb on - strand, within Psyr_4719 at 5593.209 kb on - strand, within Psyr_4719 at 5593.329 kb on + strand, within Psyr_4719 at 5593.399 kb on - strand at 5593.510 kb on + strand at 5593.511 kb on - strand at 5593.511 kb on - strand at 5593.511 kb on - strand at 5593.533 kb on + strand at 5593.551 kb on + strand at 5593.560 kb on + strand at 5593.560 kb on + strand at 5593.560 kb on + strand at 5593.561 kb on - strand at 5593.561 kb on - strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.563 kb on + strand at 5593.564 kb on - strand at 5593.564 kb on - strand at 5593.564 kb on - strand at 5593.564 kb on - strand at 5593.564 kb on - strand at 5593.687 kb on + strand at 5593.797 kb on - strand at 5593.807 kb on - strand at 5593.851 kb on + strand at 5593.854 kb on + strand at 5593.873 kb on + strand at 5593.879 kb on - strand at 5593.931 kb on - strand, within Psyr_4720 at 5593.945 kb on + strand, within Psyr_4720 at 5593.967 kb on - strand, within Psyr_4720 at 5593.967 kb on - strand, within Psyr_4720 at 5593.986 kb on + strand, within Psyr_4720 at 5593.986 kb on + strand, within Psyr_4720 at 5593.986 kb on + strand, within Psyr_4720 at 5593.987 kb on - strand, within Psyr_4720 at 5593.987 kb on - strand, within Psyr_4720 at 5593.987 kb on - strand, within Psyr_4720 at 5593.987 kb on - strand, within Psyr_4720 at 5593.991 kb on - strand, within Psyr_4720 at 5593.991 kb on - strand, within Psyr_4720 at 5593.991 kb on - strand, within Psyr_4720 at 5594.015 kb on + strand, within Psyr_4720 at 5594.015 kb on + strand, within Psyr_4720 at 5594.144 kb on + strand, within Psyr_4720 at 5594.144 kb on + strand, within Psyr_4720 at 5594.144 kb on + strand, within Psyr_4720 at 5594.145 kb on - strand, within Psyr_4720 at 5594.145 kb on - strand, within Psyr_4720 at 5594.145 kb on - strand, within Psyr_4720 at 5594.145 kb on - strand, within Psyr_4720 at 5594.145 kb on - strand, within Psyr_4720 at 5594.158 kb on + strand, within Psyr_4720 at 5594.158 kb on + strand, within Psyr_4720 at 5594.159 kb on - strand, within Psyr_4720 at 5594.159 kb on - strand, within Psyr_4720 at 5594.249 kb on + strand, within Psyr_4720 at 5594.454 kb on + strand, within Psyr_4720 at 5594.455 kb on - strand, within Psyr_4720 at 5594.455 kb on - strand, within Psyr_4720
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,591,577 + Psyr_4718 0.31 -2.3 5,591,577 + Psyr_4718 0.31 -2.9 5,591,577 + Psyr_4718 0.31 -4.1 5,591,577 + Psyr_4718 0.31 +3.5 5,591,577 + Psyr_4718 0.31 -2.1 5,591,583 + Psyr_4718 0.31 +1.1 5,591,583 + Psyr_4718 0.31 -1.6 5,591,583 + Psyr_4718 0.31 -1.0 5,591,583 + Psyr_4718 0.31 -2.9 5,591,584 - Psyr_4718 0.31 -0.0 5,591,584 - Psyr_4718 0.31 -0.2 5,591,584 - Psyr_4718 0.31 -0.5 5,591,584 - Psyr_4718 0.31 -1.5 5,591,584 - Psyr_4718 0.31 +0.2 5,591,622 + Psyr_4718 0.34 -1.9 5,591,622 + Psyr_4718 0.34 -0.3 5,591,622 + Psyr_4718 0.34 -3.5 5,591,622 + Psyr_4718 0.34 +5.0 5,591,622 + Psyr_4718 0.34 -0.2 5,591,622 + Psyr_4718 0.34 -2.5 5,591,623 - Psyr_4718 0.35 -0.9 5,591,623 - Psyr_4718 0.35 -0.4 5,591,623 - Psyr_4718 0.35 -1.8 5,591,778 + Psyr_4718 0.47 -1.9 5,591,778 + Psyr_4718 0.47 +2.8 5,591,778 + Psyr_4718 0.47 -1.9 5,591,778 + Psyr_4718 0.47 -1.2 5,591,778 + Psyr_4718 0.47 -0.4 5,591,779 - Psyr_4718 0.48 +0.3 5,591,996 - Psyr_4718 0.66 -2.3 5,591,996 - Psyr_4718 0.66 -0.0 5,592,076 + Psyr_4718 0.72 +3.0 5,592,077 - Psyr_4718 0.72 -0.3 5,592,114 + Psyr_4718 0.76 +1.2 5,592,114 + Psyr_4718 0.76 -2.2 5,592,114 + Psyr_4718 0.76 -0.6 5,592,115 - Psyr_4718 0.76 -1.6 5,592,115 - Psyr_4718 0.76 +1.0 5,592,115 - Psyr_4718 0.76 -0.6 5,592,115 - Psyr_4718 0.76 -1.6 5,592,115 - Psyr_4718 0.76 +2.8 5,592,115 - Psyr_4718 0.76 -0.1 5,592,115 - Psyr_4718 0.76 +3.9 5,592,237 + Psyr_4718 0.86 +0.1 5,592,237 + Psyr_4718 0.86 +0.2 5,592,237 + Psyr_4718 0.86 +1.8 5,592,238 - Psyr_4718 0.86 +1.0 5,592,238 - Psyr_4718 0.86 +0.6 5,592,238 - Psyr_4718 0.86 +3.3 5,592,238 - Psyr_4718 0.86 -0.0 5,592,238 - Psyr_4718 0.86 -4.4 5,592,292 + +0.1 5,592,293 - +0.5 5,592,293 - +2.0 5,592,293 - +5.2 5,592,293 - +4.7 5,592,405 + +2.3 5,592,419 - -1.5 5,592,440 + -0.5 5,592,440 + -1.2 5,592,440 + +3.3 5,592,441 - -1.3 5,592,441 - +0.7 5,592,441 - -1.0 5,592,441 - -2.0 5,592,441 - -0.5 5,592,596 + Psyr_4719 0.15 -5.0 5,592,596 + Psyr_4719 0.15 -4.2 5,592,612 + Psyr_4719 0.17 -4.1 5,592,612 + Psyr_4719 0.17 -0.2 5,592,614 + Psyr_4719 0.17 -0.2 5,592,614 + Psyr_4719 0.17 -2.0 5,592,642 - Psyr_4719 0.19 +0.0 5,592,712 - Psyr_4719 0.26 +0.5 5,592,724 - Psyr_4719 0.27 +0.4 5,592,844 - Psyr_4719 0.39 -3.6 5,592,848 - Psyr_4719 0.39 +2.0 5,592,848 - Psyr_4719 0.39 +0.1 5,592,848 - Psyr_4719 0.39 +0.5 5,592,931 + Psyr_4719 0.47 -4.0 5,592,972 + Psyr_4719 0.51 -3.9 5,593,022 + Psyr_4719 0.56 -2.3 5,593,071 + +2.8 5,593,093 - Psyr_4719 0.62 +4.0 5,593,093 - Psyr_4719 0.62 -1.6 5,593,121 + Psyr_4719 0.65 +0.7 5,593,121 + Psyr_4719 0.65 +3.8 5,593,122 - Psyr_4719 0.65 +1.0 5,593,122 - Psyr_4719 0.65 -1.5 5,593,209 - Psyr_4719 0.74 -0.8 5,593,329 + Psyr_4719 0.85 -1.2 5,593,399 - +1.6 5,593,510 + -1.3 5,593,511 - -1.3 5,593,511 - -1.4 5,593,511 - -1.9 5,593,533 + -1.1 5,593,551 + -2.7 5,593,560 + +0.8 5,593,560 + -3.9 5,593,560 + -2.9 5,593,561 - -0.4 5,593,561 - -2.9 5,593,563 + -2.5 5,593,563 + +0.3 5,593,563 + +1.0 5,593,563 + +0.6 5,593,563 + -1.7 5,593,563 + -3.7 5,593,563 + -2.1 5,593,563 + -0.0 5,593,564 - -5.4 5,593,564 - +2.8 5,593,564 - +3.9 5,593,564 - -0.8 5,593,564 - -0.6 5,593,687 + -2.8 5,593,797 - -1.7 5,593,807 - -3.3 5,593,851 + -4.5 5,593,854 + +2.6 5,593,873 + +0.5 5,593,879 - +4.0 5,593,931 - Psyr_4720 0.12 +2.8 5,593,945 + Psyr_4720 0.14 -3.6 5,593,967 - Psyr_4720 0.16 +1.6 5,593,967 - Psyr_4720 0.16 -0.9 5,593,986 + Psyr_4720 0.18 +1.2 5,593,986 + Psyr_4720 0.18 +3.5 5,593,986 + Psyr_4720 0.18 +1.0 5,593,987 - Psyr_4720 0.18 -0.0 5,593,987 - Psyr_4720 0.18 -1.2 5,593,987 - Psyr_4720 0.18 +2.3 5,593,987 - Psyr_4720 0.18 -1.6 5,593,991 - Psyr_4720 0.18 +0.4 5,593,991 - Psyr_4720 0.18 +2.6 5,593,991 - Psyr_4720 0.18 -0.6 5,594,015 + Psyr_4720 0.21 -2.1 5,594,015 + Psyr_4720 0.21 -2.5 5,594,144 + Psyr_4720 0.33 -2.6 5,594,144 + Psyr_4720 0.33 -3.3 5,594,144 + Psyr_4720 0.33 -1.3 5,594,145 - Psyr_4720 0.33 -3.0 5,594,145 - Psyr_4720 0.33 -1.8 5,594,145 - Psyr_4720 0.33 +1.0 5,594,145 - Psyr_4720 0.33 -2.0 5,594,145 - Psyr_4720 0.33 -0.0 5,594,158 + Psyr_4720 0.35 -4.3 5,594,158 + Psyr_4720 0.35 -3.0 5,594,159 - Psyr_4720 0.35 -2.8 5,594,159 - Psyr_4720 0.35 -2.4 5,594,249 + Psyr_4720 0.44 -0.0 5,594,454 + Psyr_4720 0.64 -0.4 5,594,455 - Psyr_4720 0.64 +1.6 5,594,455 - Psyr_4720 0.64 -0.1
Or see this region's nucleotide sequence