Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4669 and Psyr_4670 are separated by 135 nucleotides Psyr_4670 and Psyr_4671 are separated by 88 nucleotides
Psyr_4669: Psyr_4669 - pyrroloquinoline quinone synthesis related protease (pqqF), Metallo peptidase, MEROPS family M16A, at 5,534,830 to 5,537,118
_4669
Psyr_4670: Psyr_4670 - coenzyme PQQ synthesis protein A, at 5,537,254 to 5,537,328
_4670
Psyr_4671: Psyr_4671 - coenzyme PQQ synthesis protein B, at 5,537,417 to 5,538,328
_4671
Position (kb) 5537
5538 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5536.392 kb on - strand, within Psyr_4669 at 5536.676 kb on - strand, within Psyr_4669 at 5536.676 kb on - strand, within Psyr_4669 at 5536.839 kb on - strand, within Psyr_4669 at 5537.116 kb on + strand at 5537.139 kb on - strand at 5537.164 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.169 kb on + strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.170 kb on - strand at 5537.177 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.191 kb on + strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.192 kb on - strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.210 kb on + strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.211 kb on - strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.217 kb on + strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.218 kb on - strand at 5537.238 kb on - strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.254 kb on - strand at 5537.266 kb on - strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.275 kb on + strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.276 kb on - strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.311 kb on + strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.312 kb on - strand, within Psyr_4670 at 5537.370 kb on + strand at 5537.370 kb on + strand at 5537.371 kb on - strand at 5537.390 kb on - strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.434 kb on - strand at 5537.434 kb on - strand at 5537.434 kb on - strand at 5537.746 kb on + strand, within Psyr_4671 at 5537.956 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.217 kb on + strand, within Psyr_4671 at 5538.218 kb on - strand, within Psyr_4671 at 5538.326 kb on + strand at 5538.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,536,392 - Psyr_4669 0.68 -0.6 5,536,676 - Psyr_4669 0.81 -0.8 5,536,676 - Psyr_4669 0.81 -0.2 5,536,839 - Psyr_4669 0.88 +0.0 5,537,116 + -1.2 5,537,139 - -0.0 5,537,164 + -1.8 5,537,169 + +0.0 5,537,169 + +0.2 5,537,169 + +4.8 5,537,169 + -1.4 5,537,169 + +4.1 5,537,169 + +2.8 5,537,169 + +2.6 5,537,169 + -1.0 5,537,169 + -0.9 5,537,169 + -1.1 5,537,169 + -0.6 5,537,169 + +2.0 5,537,169 + +5.2 5,537,169 + +4.7 5,537,169 + -1.2 5,537,169 + +2.0 5,537,169 + +1.0 5,537,170 - +2.3 5,537,170 - +0.3 5,537,170 - -0.7 5,537,170 - -1.2 5,537,170 - +4.2 5,537,170 - +1.0 5,537,170 - -1.0 5,537,170 - -1.1 5,537,170 - -3.9 5,537,170 - -1.5 5,537,177 + -0.8 5,537,191 + +1.0 5,537,191 + -2.4 5,537,191 + -0.1 5,537,191 + +3.8 5,537,191 + +3.9 5,537,191 + +4.5 5,537,191 + -0.2 5,537,192 - +2.0 5,537,192 - -2.6 5,537,192 - +0.2 5,537,192 - +0.1 5,537,192 - +5.0 5,537,192 - -1.1 5,537,192 - +0.0 5,537,192 - -1.0 5,537,192 - +0.6 5,537,192 - -0.6 5,537,210 + +1.0 5,537,210 + +1.1 5,537,210 + -1.5 5,537,210 + +0.8 5,537,210 + +2.0 5,537,211 - +0.6 5,537,211 - -2.8 5,537,211 - -1.9 5,537,217 + +0.2 5,537,217 + -2.3 5,537,217 + +2.6 5,537,217 + -0.3 5,537,217 + -0.2 5,537,217 + -1.0 5,537,218 - -1.2 5,537,218 - -1.3 5,537,218 - -4.0 5,537,218 - +0.4 5,537,218 - +0.2 5,537,218 - +2.8 5,537,218 - +0.0 5,537,218 - -2.2 5,537,218 - +0.4 5,537,218 - +0.2 5,537,218 - -1.6 5,537,218 - -1.0 5,537,238 - -4.1 5,537,254 - -2.2 5,537,254 - -0.6 5,537,254 - -1.0 5,537,266 - Psyr_4670 0.16 +0.0 5,537,275 + Psyr_4670 0.28 +3.3 5,537,275 + Psyr_4670 0.28 -0.4 5,537,275 + Psyr_4670 0.28 -0.6 5,537,275 + Psyr_4670 0.28 -1.7 5,537,276 - Psyr_4670 0.29 +1.6 5,537,276 - Psyr_4670 0.29 +0.7 5,537,276 - Psyr_4670 0.29 +1.0 5,537,276 - Psyr_4670 0.29 -2.2 5,537,311 + Psyr_4670 0.76 +0.9 5,537,311 + Psyr_4670 0.76 +2.6 5,537,311 + Psyr_4670 0.76 -0.8 5,537,311 + Psyr_4670 0.76 +0.2 5,537,311 + Psyr_4670 0.76 +4.6 5,537,311 + Psyr_4670 0.76 +1.6 5,537,311 + Psyr_4670 0.76 +0.5 5,537,311 + Psyr_4670 0.76 +0.0 5,537,312 - Psyr_4670 0.77 +0.0 5,537,312 - Psyr_4670 0.77 -2.1 5,537,312 - Psyr_4670 0.77 +1.6 5,537,370 + -0.5 5,537,370 + +0.0 5,537,371 - +2.8 5,537,390 - +1.5 5,537,420 + -1.4 5,537,420 + -1.2 5,537,420 + +0.2 5,537,420 + +0.0 5,537,420 + -0.1 5,537,420 + -0.5 5,537,420 + -2.3 5,537,420 + +0.0 5,537,420 + +3.3 5,537,420 + +1.3 5,537,421 - -0.1 5,537,421 - -1.4 5,537,421 - +0.0 5,537,421 - -1.3 5,537,421 - +4.7 5,537,421 - -1.8 5,537,421 - -3.1 5,537,421 - -1.9 5,537,421 - +2.8 5,537,421 - -2.4 5,537,421 - +0.0 5,537,421 - -1.9 5,537,421 - -0.9 5,537,421 - +2.6 5,537,421 - -1.4 5,537,421 - +2.3 5,537,421 - +2.8 5,537,433 + -0.7 5,537,433 + +0.6 5,537,434 - +3.8 5,537,434 - -1.7 5,537,434 - +3.2 5,537,746 + Psyr_4671 0.36 +1.6 5,537,956 + Psyr_4671 0.59 -1.7 5,538,002 + Psyr_4671 0.64 +3.0 5,538,003 - Psyr_4671 0.64 -0.7 5,538,003 - Psyr_4671 0.64 +1.0 5,538,217 + Psyr_4671 0.88 -2.7 5,538,218 - Psyr_4671 0.88 +2.3 5,538,326 + -2.4 5,538,327 - -1.6
Or see this region's nucleotide sequence