Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4640

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4638 and Psyr_4639 are separated by 198 nucleotidesPsyr_4639 and Psyr_4640 are separated by 478 nucleotidesPsyr_4640 and Psyr_4641 are separated by 67 nucleotides Psyr_4638: Psyr_4638 - O-sialoglycoprotein endopeptidase, at 5,498,278 to 5,499,303 _4638 Psyr_4639: Psyr_4639 - SSU ribosomal protein S21P, at 5,499,502 to 5,499,717 _4639 Psyr_4640: Psyr_4640 - DNA primase, at 5,500,196 to 5,502,151 _4640 Psyr_4641: Psyr_4641 - RNA polymerase, sigma 70 subunit, RpoD, at 5,502,219 to 5,504,069 _4641 Position (kb) 5500 5501 5502 5503Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5499.806 kb on + strandat 5499.879 kb on + strandat 5499.879 kb on + strandat 5499.879 kb on + strandat 5499.929 kb on + strandat 5499.929 kb on + strandat 5500.099 kb on + strandat 5500.149 kb on + strandat 5502.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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5,499,806 + -2.6
5,499,879 + -0.0
5,499,879 + -1.5
5,499,879 + -2.5
5,499,929 + +1.1
5,499,929 + +0.6
5,500,099 + +2.8
5,500,149 + -0.5
5,502,157 + +3.3

Or see this region's nucleotide sequence