Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4505 and Psyr_4506 are separated by 6 nucleotides Psyr_4506 and Psyr_4507 overlap by 4 nucleotides Psyr_4507 and Psyr_4508 overlap by 1 nucleotides
Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340
_4505
Psyr_4506: Psyr_4506 - Glycerophosphodiester phosphodiesterase, at 5,370,347 to 5,371,108
_4506
Psyr_4507: Psyr_4507 - Inositol monophosphatase, at 5,371,105 to 5,371,848
_4507
Psyr_4508: Psyr_4508 - Endo-1,4-beta-xylanase, at 5,371,848 to 5,372,960
_4508
Position (kb) 5371
5372 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5370.179 kb on + strand, within Psyr_4505 at 5370.179 kb on + strand, within Psyr_4505 at 5370.179 kb on + strand, within Psyr_4505 at 5370.180 kb on - strand, within Psyr_4505 at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.407 kb on + strand at 5370.408 kb on - strand at 5370.408 kb on - strand at 5370.580 kb on + strand, within Psyr_4506 at 5370.835 kb on - strand, within Psyr_4506 at 5370.846 kb on + strand, within Psyr_4506 at 5370.847 kb on - strand, within Psyr_4506 at 5370.847 kb on - strand, within Psyr_4506 at 5370.857 kb on - strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.918 kb on + strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.919 kb on - strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.927 kb on + strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.928 kb on - strand, within Psyr_4506 at 5370.937 kb on + strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5370.938 kb on - strand, within Psyr_4506 at 5371.032 kb on + strand at 5371.032 kb on + strand at 5371.033 kb on - strand at 5371.033 kb on - strand at 5371.139 kb on + strand at 5371.139 kb on + strand at 5371.290 kb on + strand, within Psyr_4507 at 5371.291 kb on - strand, within Psyr_4507 at 5371.365 kb on + strand, within Psyr_4507 at 5371.366 kb on - strand, within Psyr_4507 at 5371.369 kb on + strand, within Psyr_4507 at 5371.369 kb on + strand, within Psyr_4507 at 5371.369 kb on + strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.370 kb on - strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.408 kb on + strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.409 kb on - strand, within Psyr_4507 at 5371.462 kb on + strand, within Psyr_4507 at 5371.463 kb on - strand, within Psyr_4507 at 5371.463 kb on - strand, within Psyr_4507 at 5371.693 kb on + strand, within Psyr_4507 at 5371.693 kb on + strand, within Psyr_4507 at 5371.693 kb on + strand, within Psyr_4507 at 5371.694 kb on - strand, within Psyr_4507 at 5371.812 kb on - strand at 5371.847 kb on - strand at 5371.847 kb on - strand at 5372.065 kb on + strand, within Psyr_4508 at 5372.118 kb on + strand, within Psyr_4508 at 5372.119 kb on - strand, within Psyr_4508 at 5372.175 kb on - strand, within Psyr_4508 at 5372.277 kb on - strand, within Psyr_4508 at 5372.293 kb on - strand, within Psyr_4508 at 5372.382 kb on + strand, within Psyr_4508 at 5372.403 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.413 kb on + strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.414 kb on - strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.460 kb on + strand, within Psyr_4508 at 5372.560 kb on + strand, within Psyr_4508 at 5372.628 kb on - strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.741 kb on + strand, within Psyr_4508 at 5372.741 kb on + strand, within Psyr_4508 at 5372.748 kb on + strand, within Psyr_4508 at 5372.784 kb on - strand, within Psyr_4508 at 5372.784 kb on - strand, within Psyr_4508 at 5372.790 kb on - strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.793 kb on - strand, within Psyr_4508
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,370,179 + Psyr_4505 0.85 +3.0 5,370,179 + Psyr_4505 0.85 +1.0 5,370,179 + Psyr_4505 0.85 +1.0 5,370,180 - Psyr_4505 0.85 -1.2 5,370,407 + +0.4 5,370,407 + +1.0 5,370,407 + -1.3 5,370,407 + -1.0 5,370,408 - -3.0 5,370,408 - +1.6 5,370,580 + Psyr_4506 0.31 -1.6 5,370,835 - Psyr_4506 0.64 -1.3 5,370,846 + Psyr_4506 0.65 -2.1 5,370,847 - Psyr_4506 0.66 -0.8 5,370,847 - Psyr_4506 0.66 -1.3 5,370,857 - Psyr_4506 0.67 -0.4 5,370,918 + Psyr_4506 0.75 -0.8 5,370,918 + Psyr_4506 0.75 -3.2 5,370,918 + Psyr_4506 0.75 -3.0 5,370,918 + Psyr_4506 0.75 +0.0 5,370,919 - Psyr_4506 0.75 -4.2 5,370,919 - Psyr_4506 0.75 -1.8 5,370,919 - Psyr_4506 0.75 -1.4 5,370,919 - Psyr_4506 0.75 +3.6 5,370,927 + Psyr_4506 0.76 +4.3 5,370,927 + Psyr_4506 0.76 -1.0 5,370,927 + Psyr_4506 0.76 -0.9 5,370,927 + Psyr_4506 0.76 -0.7 5,370,927 + Psyr_4506 0.76 +2.8 5,370,927 + Psyr_4506 0.76 -3.4 5,370,927 + Psyr_4506 0.76 -4.2 5,370,927 + Psyr_4506 0.76 -1.6 5,370,927 + Psyr_4506 0.76 -0.4 5,370,928 - Psyr_4506 0.76 +2.6 5,370,928 - Psyr_4506 0.76 -2.4 5,370,928 - Psyr_4506 0.76 -0.6 5,370,928 - Psyr_4506 0.76 +2.0 5,370,937 + Psyr_4506 0.77 -0.8 5,370,938 - Psyr_4506 0.78 +1.0 5,370,938 - Psyr_4506 0.78 +3.6 5,371,032 + +0.3 5,371,032 + -0.1 5,371,033 - +4.8 5,371,033 - -0.2 5,371,139 + +2.3 5,371,139 + +0.4 5,371,290 + Psyr_4507 0.25 +0.2 5,371,291 - Psyr_4507 0.25 +0.0 5,371,365 + Psyr_4507 0.35 +2.6 5,371,366 - Psyr_4507 0.35 -0.6 5,371,369 + Psyr_4507 0.35 -1.5 5,371,369 + Psyr_4507 0.35 -2.4 5,371,369 + Psyr_4507 0.35 +0.0 5,371,370 - Psyr_4507 0.36 -1.5 5,371,370 - Psyr_4507 0.36 +0.0 5,371,370 - Psyr_4507 0.36 +0.4 5,371,370 - Psyr_4507 0.36 +0.0 5,371,370 - Psyr_4507 0.36 -1.8 5,371,370 - Psyr_4507 0.36 +4.0 5,371,408 + Psyr_4507 0.41 -2.2 5,371,408 + Psyr_4507 0.41 -1.1 5,371,408 + Psyr_4507 0.41 +2.6 5,371,408 + Psyr_4507 0.41 -2.7 5,371,408 + Psyr_4507 0.41 -1.4 5,371,408 + Psyr_4507 0.41 -0.2 5,371,408 + Psyr_4507 0.41 -2.8 5,371,408 + Psyr_4507 0.41 -1.6 5,371,408 + Psyr_4507 0.41 +0.0 5,371,408 + Psyr_4507 0.41 -4.0 5,371,408 + Psyr_4507 0.41 -0.9 5,371,409 - Psyr_4507 0.41 -3.0 5,371,409 - Psyr_4507 0.41 -1.0 5,371,409 - Psyr_4507 0.41 +3.0 5,371,409 - Psyr_4507 0.41 +2.3 5,371,409 - Psyr_4507 0.41 -2.6 5,371,409 - Psyr_4507 0.41 -3.4 5,371,409 - Psyr_4507 0.41 -4.2 5,371,409 - Psyr_4507 0.41 -1.2 5,371,409 - Psyr_4507 0.41 -1.6 5,371,409 - Psyr_4507 0.41 +2.6 5,371,409 - Psyr_4507 0.41 -2.8 5,371,409 - Psyr_4507 0.41 -2.2 5,371,409 - Psyr_4507 0.41 -2.9 5,371,462 + Psyr_4507 0.48 +1.0 5,371,463 - Psyr_4507 0.48 +0.7 5,371,463 - Psyr_4507 0.48 -1.2 5,371,693 + Psyr_4507 0.79 +4.2 5,371,693 + Psyr_4507 0.79 +3.7 5,371,693 + Psyr_4507 0.79 -1.8 5,371,694 - Psyr_4507 0.79 -2.3 5,371,812 - +2.3 5,371,847 - +0.0 5,371,847 - -2.6 5,372,065 + Psyr_4508 0.19 +3.6 5,372,118 + Psyr_4508 0.24 +0.5 5,372,119 - Psyr_4508 0.24 +3.8 5,372,175 - Psyr_4508 0.29 +2.8 5,372,277 - Psyr_4508 0.39 +3.7 5,372,293 - Psyr_4508 0.40 -2.2 5,372,382 + Psyr_4508 0.48 +4.3 5,372,403 + Psyr_4508 0.50 -1.0 5,372,413 + Psyr_4508 0.51 +3.5 5,372,413 + Psyr_4508 0.51 -0.9 5,372,413 + Psyr_4508 0.51 +2.3 5,372,413 + Psyr_4508 0.51 +0.8 5,372,413 + Psyr_4508 0.51 -0.3 5,372,413 + Psyr_4508 0.51 +3.3 5,372,413 + Psyr_4508 0.51 +0.8 5,372,413 + Psyr_4508 0.51 +1.6 5,372,414 - Psyr_4508 0.51 +4.8 5,372,414 - Psyr_4508 0.51 -1.1 5,372,414 - Psyr_4508 0.51 +4.0 5,372,414 - Psyr_4508 0.51 +1.3 5,372,414 - Psyr_4508 0.51 +3.0 5,372,414 - Psyr_4508 0.51 +2.0 5,372,460 + Psyr_4508 0.55 +0.9 5,372,460 + Psyr_4508 0.55 +2.6 5,372,460 + Psyr_4508 0.55 +0.0 5,372,460 + Psyr_4508 0.55 +2.3 5,372,560 + Psyr_4508 0.64 +0.4 5,372,628 - Psyr_4508 0.70 +4.2 5,372,739 + Psyr_4508 0.80 -1.6 5,372,739 + Psyr_4508 0.80 +2.0 5,372,739 + Psyr_4508 0.80 +2.0 5,372,739 + Psyr_4508 0.80 -0.4 5,372,739 + Psyr_4508 0.80 +4.6 5,372,739 + Psyr_4508 0.80 +0.3 5,372,740 - Psyr_4508 0.80 +0.0 5,372,740 - Psyr_4508 0.80 -1.0 5,372,740 - Psyr_4508 0.80 -0.6 5,372,740 - Psyr_4508 0.80 -0.5 5,372,740 - Psyr_4508 0.80 -1.2 5,372,740 - Psyr_4508 0.80 +0.5 5,372,740 - Psyr_4508 0.80 +3.0 5,372,740 - Psyr_4508 0.80 +3.0 5,372,741 + Psyr_4508 0.80 -0.7 5,372,741 + Psyr_4508 0.80 +2.8 5,372,748 + Psyr_4508 0.81 -0.0 5,372,784 - Psyr_4508 0.84 -4.0 5,372,784 - Psyr_4508 0.84 -0.5 5,372,790 - Psyr_4508 0.85 -1.9 5,372,792 + Psyr_4508 0.85 +3.8 5,372,792 + Psyr_4508 0.85 -1.7 5,372,792 + Psyr_4508 0.85 +2.8 5,372,792 + Psyr_4508 0.85 -0.8 5,372,793 - Psyr_4508 0.85 -0.8
Or see this region's nucleotide sequence