Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4493 and Psyr_4494 are separated by 31 nucleotides Psyr_4494 and Psyr_4495 are separated by 282 nucleotides
Psyr_4493: Psyr_4493 - PAS:GGDEF, at 5,354,087 to 5,357,005
_4493
Psyr_4494: Psyr_4494 - ABC-type phosphate/phosphonate transport system periplasmic component-like protein, at 5,357,037 to 5,357,888
_4494
Psyr_4495: Psyr_4495 - Beta-lactamase, at 5,358,171 to 5,359,076
_4495
Position (kb) 5357
5358 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5356.092 kb on - strand, within Psyr_4493 at 5356.148 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.200 kb on + strand, within Psyr_4493 at 5356.201 kb on - strand, within Psyr_4493 at 5356.201 kb on - strand, within Psyr_4493 at 5356.201 kb on - strand, within Psyr_4493 at 5356.201 kb on - strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.207 kb on + strand, within Psyr_4493 at 5356.208 kb on - strand, within Psyr_4493 at 5356.208 kb on - strand, within Psyr_4493 at 5356.208 kb on - strand, within Psyr_4493 at 5356.208 kb on - strand, within Psyr_4493 at 5356.261 kb on + strand, within Psyr_4493 at 5356.276 kb on + strand, within Psyr_4493 at 5356.276 kb on + strand, within Psyr_4493 at 5356.276 kb on + strand, within Psyr_4493 at 5356.277 kb on - strand, within Psyr_4493 at 5356.277 kb on - strand, within Psyr_4493 at 5356.277 kb on - strand, within Psyr_4493 at 5356.318 kb on + strand, within Psyr_4493 at 5356.319 kb on - strand, within Psyr_4493 at 5356.346 kb on + strand, within Psyr_4493 at 5356.346 kb on + strand, within Psyr_4493 at 5356.347 kb on - strand, within Psyr_4493 at 5356.347 kb on - strand, within Psyr_4493 at 5356.347 kb on - strand, within Psyr_4493 at 5356.348 kb on + strand, within Psyr_4493 at 5356.358 kb on + strand, within Psyr_4493 at 5356.358 kb on + strand, within Psyr_4493 at 5356.358 kb on + strand, within Psyr_4493 at 5356.359 kb on - strand, within Psyr_4493 at 5356.359 kb on - strand, within Psyr_4493 at 5356.428 kb on + strand, within Psyr_4493 at 5356.428 kb on + strand, within Psyr_4493 at 5356.428 kb on + strand, within Psyr_4493 at 5356.428 kb on + strand, within Psyr_4493 at 5356.429 kb on - strand, within Psyr_4493 at 5356.429 kb on - strand, within Psyr_4493 at 5356.429 kb on - strand, within Psyr_4493 at 5356.481 kb on + strand, within Psyr_4493 at 5356.481 kb on + strand, within Psyr_4493 at 5356.482 kb on - strand, within Psyr_4493 at 5356.542 kb on + strand, within Psyr_4493 at 5356.542 kb on + strand, within Psyr_4493 at 5356.542 kb on + strand, within Psyr_4493 at 5356.543 kb on - strand, within Psyr_4493 at 5356.543 kb on - strand, within Psyr_4493 at 5356.594 kb on - strand, within Psyr_4493 at 5356.609 kb on + strand, within Psyr_4493 at 5356.634 kb on + strand, within Psyr_4493 at 5356.635 kb on - strand, within Psyr_4493 at 5356.730 kb on - strand at 5356.866 kb on - strand at 5356.866 kb on - strand at 5356.866 kb on - strand at 5356.877 kb on - strand at 5356.959 kb on - strand at 5357.039 kb on - strand at 5357.086 kb on + strand at 5357.086 kb on + strand at 5357.115 kb on - strand at 5357.225 kb on + strand, within Psyr_4494 at 5357.254 kb on - strand, within Psyr_4494 at 5357.322 kb on + strand, within Psyr_4494 at 5357.322 kb on + strand, within Psyr_4494 at 5357.358 kb on - strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.408 kb on + strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.409 kb on - strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.414 kb on + strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.415 kb on - strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.453 kb on + strand, within Psyr_4494 at 5357.454 kb on - strand, within Psyr_4494 at 5357.502 kb on + strand, within Psyr_4494 at 5357.662 kb on + strand, within Psyr_4494 at 5357.662 kb on + strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.663 kb on - strand, within Psyr_4494 at 5357.731 kb on + strand, within Psyr_4494 at 5357.731 kb on + strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.732 kb on - strand, within Psyr_4494 at 5357.736 kb on + strand, within Psyr_4494 at 5357.736 kb on + strand, within Psyr_4494 at 5357.737 kb on - strand, within Psyr_4494 at 5357.808 kb on - strand at 5357.862 kb on - strand at 5357.862 kb on - strand at 5357.881 kb on - strand at 5357.907 kb on + strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.908 kb on - strand at 5357.916 kb on - strand at 5357.943 kb on + strand at 5357.943 kb on + strand at 5357.962 kb on + strand at 5357.986 kb on + strand at 5357.990 kb on + strand at 5358.005 kb on + strand at 5358.006 kb on - strand at 5358.076 kb on + strand at 5358.076 kb on + strand at 5358.076 kb on + strand at 5358.077 kb on - strand at 5358.077 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.080 kb on - strand at 5358.118 kb on + strand at 5358.119 kb on - strand at 5358.248 kb on + strand at 5358.248 kb on + strand at 5358.277 kb on + strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.350 kb on - strand, within Psyr_4495 at 5358.396 kb on + strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.397 kb on - strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.535 kb on + strand, within Psyr_4495 at 5358.623 kb on + strand, within Psyr_4495 at 5358.640 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.662 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.672 kb on + strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.673 kb on - strand, within Psyr_4495 at 5358.690 kb on + strand, within Psyr_4495 at 5358.886 kb on - strand, within Psyr_4495
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,356,092 - Psyr_4493 0.69 -0.7 5,356,148 + Psyr_4493 0.71 -0.3 5,356,200 + Psyr_4493 0.72 -1.0 5,356,200 + Psyr_4493 0.72 -1.3 5,356,200 + Psyr_4493 0.72 -1.4 5,356,200 + Psyr_4493 0.72 +1.0 5,356,200 + Psyr_4493 0.72 -0.6 5,356,200 + Psyr_4493 0.72 -1.2 5,356,200 + Psyr_4493 0.72 +2.0 5,356,200 + Psyr_4493 0.72 -1.9 5,356,200 + Psyr_4493 0.72 -1.1 5,356,201 - Psyr_4493 0.72 -2.4 5,356,201 - Psyr_4493 0.72 +3.9 5,356,201 - Psyr_4493 0.72 +2.8 5,356,201 - Psyr_4493 0.72 -0.8 5,356,207 + Psyr_4493 0.73 -2.2 5,356,207 + Psyr_4493 0.73 -1.1 5,356,207 + Psyr_4493 0.73 -2.7 5,356,207 + Psyr_4493 0.73 -0.4 5,356,207 + Psyr_4493 0.73 +0.3 5,356,207 + Psyr_4493 0.73 +3.2 5,356,207 + Psyr_4493 0.73 +0.5 5,356,207 + Psyr_4493 0.73 -1.4 5,356,208 - Psyr_4493 0.73 +3.5 5,356,208 - Psyr_4493 0.73 +0.0 5,356,208 - Psyr_4493 0.73 -1.2 5,356,208 - Psyr_4493 0.73 -2.2 5,356,261 + Psyr_4493 0.74 -1.8 5,356,276 + Psyr_4493 0.75 +2.8 5,356,276 + Psyr_4493 0.75 -1.4 5,356,276 + Psyr_4493 0.75 +0.0 5,356,277 - Psyr_4493 0.75 -4.1 5,356,277 - Psyr_4493 0.75 -2.6 5,356,277 - Psyr_4493 0.75 +3.0 5,356,318 + Psyr_4493 0.76 +3.2 5,356,319 - Psyr_4493 0.76 -0.6 5,356,346 + Psyr_4493 0.77 +1.0 5,356,346 + Psyr_4493 0.77 +0.0 5,356,347 - Psyr_4493 0.77 -2.2 5,356,347 - Psyr_4493 0.77 +0.0 5,356,347 - Psyr_4493 0.77 +2.6 5,356,348 + Psyr_4493 0.77 -2.0 5,356,358 + Psyr_4493 0.78 -1.7 5,356,358 + Psyr_4493 0.78 -0.5 5,356,358 + Psyr_4493 0.78 -3.2 5,356,359 - Psyr_4493 0.78 +0.0 5,356,359 - Psyr_4493 0.78 -1.6 5,356,428 + Psyr_4493 0.80 -1.0 5,356,428 + Psyr_4493 0.80 +1.0 5,356,428 + Psyr_4493 0.80 +3.2 5,356,428 + Psyr_4493 0.80 -1.4 5,356,429 - Psyr_4493 0.80 -1.6 5,356,429 - Psyr_4493 0.80 +3.3 5,356,429 - Psyr_4493 0.80 -2.7 5,356,481 + Psyr_4493 0.82 -1.3 5,356,481 + Psyr_4493 0.82 -2.1 5,356,482 - Psyr_4493 0.82 +0.2 5,356,542 + Psyr_4493 0.84 -2.6 5,356,542 + Psyr_4493 0.84 -2.9 5,356,542 + Psyr_4493 0.84 -2.3 5,356,543 - Psyr_4493 0.84 +2.3 5,356,543 - Psyr_4493 0.84 +0.7 5,356,594 - Psyr_4493 0.86 -3.1 5,356,609 + Psyr_4493 0.86 -0.6 5,356,634 + Psyr_4493 0.87 -0.8 5,356,635 - Psyr_4493 0.87 -0.8 5,356,730 - -1.1 5,356,866 - -0.4 5,356,866 - +0.0 5,356,866 - +2.8 5,356,877 - -1.8 5,356,959 - -4.3 5,357,039 - -2.5 5,357,086 + -2.6 5,357,086 + -0.8 5,357,115 - -1.1 5,357,225 + Psyr_4494 0.22 -0.6 5,357,254 - Psyr_4494 0.25 -2.4 5,357,322 + Psyr_4494 0.33 +3.7 5,357,322 + Psyr_4494 0.33 -2.2 5,357,358 - Psyr_4494 0.38 +4.3 5,357,408 + Psyr_4494 0.44 -2.1 5,357,408 + Psyr_4494 0.44 +2.6 5,357,408 + Psyr_4494 0.44 -4.6 5,357,409 - Psyr_4494 0.44 +0.0 5,357,409 - Psyr_4494 0.44 +0.8 5,357,409 - Psyr_4494 0.44 +1.0 5,357,409 - Psyr_4494 0.44 -0.2 5,357,414 + Psyr_4494 0.44 +0.8 5,357,414 + Psyr_4494 0.44 +2.3 5,357,414 + Psyr_4494 0.44 +0.0 5,357,414 + Psyr_4494 0.44 +0.0 5,357,414 + Psyr_4494 0.44 +2.0 5,357,414 + Psyr_4494 0.44 +1.6 5,357,414 + Psyr_4494 0.44 +2.6 5,357,414 + Psyr_4494 0.44 -1.3 5,357,414 + Psyr_4494 0.44 -0.7 5,357,415 - Psyr_4494 0.44 +2.0 5,357,415 - Psyr_4494 0.44 -2.6 5,357,415 - Psyr_4494 0.44 -0.5 5,357,415 - Psyr_4494 0.44 +3.7 5,357,415 - Psyr_4494 0.44 -1.1 5,357,415 - Psyr_4494 0.44 -1.0 5,357,415 - Psyr_4494 0.44 -2.2 5,357,415 - Psyr_4494 0.44 -2.4 5,357,415 - Psyr_4494 0.44 +3.0 5,357,415 - Psyr_4494 0.44 +3.0 5,357,415 - Psyr_4494 0.44 +0.0 5,357,415 - Psyr_4494 0.44 -0.9 5,357,415 - Psyr_4494 0.44 +0.1 5,357,453 + Psyr_4494 0.49 -2.4 5,357,453 + Psyr_4494 0.49 +3.0 5,357,453 + Psyr_4494 0.49 +2.0 5,357,453 + Psyr_4494 0.49 +1.4 5,357,454 - Psyr_4494 0.49 +1.6 5,357,502 + Psyr_4494 0.55 -1.5 5,357,662 + Psyr_4494 0.73 -3.3 5,357,662 + Psyr_4494 0.73 -1.3 5,357,663 - Psyr_4494 0.73 +0.0 5,357,663 - Psyr_4494 0.73 +2.8 5,357,663 - Psyr_4494 0.73 +3.6 5,357,663 - Psyr_4494 0.73 -0.2 5,357,731 + Psyr_4494 0.81 +1.6 5,357,731 + Psyr_4494 0.81 -3.2 5,357,732 - Psyr_4494 0.82 +2.8 5,357,732 - Psyr_4494 0.82 +3.2 5,357,732 - Psyr_4494 0.82 -3.0 5,357,732 - Psyr_4494 0.82 +2.0 5,357,732 - Psyr_4494 0.82 +0.0 5,357,736 + Psyr_4494 0.82 -1.8 5,357,736 + Psyr_4494 0.82 +3.7 5,357,737 - Psyr_4494 0.82 -2.6 5,357,808 - -3.2 5,357,862 - +1.6 5,357,862 - +3.6 5,357,881 - -3.4 5,357,907 + +1.6 5,357,908 - +2.0 5,357,908 - -0.2 5,357,908 - -3.7 5,357,908 - -1.3 5,357,916 - -3.7 5,357,943 + +2.0 5,357,943 + -2.3 5,357,962 + +0.0 5,357,986 + -1.4 5,357,990 + -1.1 5,358,005 + -0.5 5,358,006 - -0.7 5,358,076 + -0.9 5,358,076 + -1.3 5,358,076 + -0.9 5,358,077 - -3.9 5,358,077 - -2.0 5,358,080 - +2.0 5,358,080 - -2.1 5,358,080 - +2.6 5,358,080 - -0.2 5,358,118 + +2.6 5,358,119 - -0.7 5,358,248 + +1.0 5,358,248 + +0.0 5,358,277 + Psyr_4495 0.12 +5.2 5,358,350 - Psyr_4495 0.20 -1.2 5,358,350 - Psyr_4495 0.20 -2.0 5,358,350 - Psyr_4495 0.20 +3.8 5,358,396 + Psyr_4495 0.25 +4.1 5,358,397 - Psyr_4495 0.25 -1.7 5,358,397 - Psyr_4495 0.25 -1.6 5,358,535 + Psyr_4495 0.40 +0.4 5,358,535 + Psyr_4495 0.40 -1.7 5,358,623 + Psyr_4495 0.50 -1.3 5,358,640 + Psyr_4495 0.52 -2.0 5,358,662 + Psyr_4495 0.54 -4.6 5,358,662 + Psyr_4495 0.54 -1.2 5,358,662 + Psyr_4495 0.54 -1.4 5,358,662 + Psyr_4495 0.54 -0.1 5,358,672 + Psyr_4495 0.55 +4.4 5,358,672 + Psyr_4495 0.55 -2.0 5,358,672 + Psyr_4495 0.55 +0.7 5,358,672 + Psyr_4495 0.55 +4.5 5,358,673 - Psyr_4495 0.55 -3.6 5,358,673 - Psyr_4495 0.55 -1.6 5,358,673 - Psyr_4495 0.55 +0.0 5,358,690 + Psyr_4495 0.57 +0.3 5,358,886 - Psyr_4495 0.79 +0.0
Or see this region's nucleotide sequence