Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4308 and Psyr_4309 are separated by 100 nucleotides Psyr_4309 and Psyr_4310 are separated by 123 nucleotides
Psyr_4308: Psyr_4308 - conserved hypothetical protein, at 5,133,734 to 5,135,290
_4308
Psyr_4309: Psyr_4309 - hypothetical protein, at 5,135,391 to 5,136,005
_4309
Psyr_4310: Psyr_4310 - hypothetical protein, at 5,136,129 to 5,137,064
_4310
Position (kb) 5135
5136
5137 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5134.427 kb on - strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.428 kb on + strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.429 kb on - strand, within Psyr_4308 at 5134.476 kb on + strand, within Psyr_4308 at 5134.554 kb on + strand, within Psyr_4308 at 5134.554 kb on + strand, within Psyr_4308 at 5134.554 kb on + strand, within Psyr_4308 at 5134.554 kb on + strand, within Psyr_4308 at 5134.554 kb on + strand, within Psyr_4308 at 5134.555 kb on - strand, within Psyr_4308 at 5134.555 kb on - strand, within Psyr_4308 at 5134.555 kb on - strand, within Psyr_4308 at 5134.624 kb on + strand, within Psyr_4308 at 5134.624 kb on + strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.625 kb on - strand, within Psyr_4308 at 5134.645 kb on + strand, within Psyr_4308 at 5134.645 kb on + strand, within Psyr_4308 at 5134.646 kb on - strand, within Psyr_4308 at 5134.646 kb on - strand, within Psyr_4308 at 5134.987 kb on - strand, within Psyr_4308 at 5134.987 kb on - strand, within Psyr_4308 at 5134.987 kb on - strand at 5134.987 kb on - strand, within Psyr_4308 at 5135.058 kb on + strand, within Psyr_4308 at 5135.059 kb on - strand, within Psyr_4308 at 5135.171 kb on - strand at 5135.171 kb on - strand at 5135.171 kb on - strand at 5135.172 kb on + strand at 5135.172 kb on + strand at 5135.173 kb on - strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.178 kb on + strand at 5135.179 kb on - strand at 5135.179 kb on - strand at 5135.179 kb on - strand at 5135.189 kb on - strand at 5135.206 kb on + strand at 5135.206 kb on + strand at 5135.206 kb on + strand at 5135.207 kb on - strand at 5135.329 kb on - strand at 5135.341 kb on - strand at 5135.373 kb on + strand at 5135.373 kb on + strand at 5135.374 kb on - strand at 5135.386 kb on + strand at 5135.389 kb on + strand at 5135.390 kb on - strand at 5135.390 kb on - strand at 5135.393 kb on - strand at 5135.393 kb on - strand at 5135.420 kb on - strand at 5135.420 kb on - strand at 5135.421 kb on + strand at 5135.425 kb on - strand at 5135.425 kb on - strand at 5135.425 kb on - strand at 5135.470 kb on - strand, within Psyr_4309 at 5135.555 kb on + strand, within Psyr_4309 at 5135.555 kb on + strand, within Psyr_4309 at 5135.556 kb on - strand, within Psyr_4309 at 5135.639 kb on + strand, within Psyr_4309 at 5135.676 kb on - strand, within Psyr_4309 at 5135.707 kb on - strand, within Psyr_4309 at 5135.746 kb on + strand, within Psyr_4309 at 5135.747 kb on - strand, within Psyr_4309 at 5135.747 kb on - strand, within Psyr_4309 at 5135.751 kb on + strand, within Psyr_4309 at 5135.751 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.753 kb on + strand, within Psyr_4309 at 5135.754 kb on - strand, within Psyr_4309 at 5135.754 kb on - strand, within Psyr_4309 at 5135.795 kb on + strand, within Psyr_4309 at 5135.924 kb on + strand, within Psyr_4309 at 5135.925 kb on - strand, within Psyr_4309 at 5135.946 kb on + strand at 5135.947 kb on - strand at 5135.947 kb on - strand at 5135.970 kb on + strand at 5135.971 kb on - strand at 5135.979 kb on + strand at 5136.090 kb on + strand at 5136.091 kb on - strand at 5136.139 kb on + strand at 5136.139 kb on + strand at 5136.140 kb on - strand at 5136.140 kb on - strand at 5136.140 kb on - strand at 5136.144 kb on - strand at 5136.449 kb on + strand, within Psyr_4310 at 5136.466 kb on + strand, within Psyr_4310 at 5136.467 kb on - strand, within Psyr_4310 at 5136.467 kb on - strand, within Psyr_4310 at 5136.518 kb on - strand, within Psyr_4310 at 5136.570 kb on + strand, within Psyr_4310 at 5136.699 kb on - strand, within Psyr_4310 at 5136.724 kb on + strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.725 kb on - strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.772 kb on + strand, within Psyr_4310 at 5136.773 kb on - strand, within Psyr_4310 at 5136.773 kb on - strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.820 kb on + strand, within Psyr_4310 at 5136.821 kb on - strand, within Psyr_4310 at 5136.918 kb on + strand, within Psyr_4310 at 5136.918 kb on + strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.919 kb on - strand, within Psyr_4310 at 5136.922 kb on + strand, within Psyr_4310 at 5136.926 kb on - strand, within Psyr_4310 at 5136.986 kb on + strand at 5136.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 5,134,427 - Psyr_4308 0.45 -1.4 5,134,428 + Psyr_4308 0.45 +0.1 5,134,428 + Psyr_4308 0.45 +0.1 5,134,428 + Psyr_4308 0.45 -0.4 5,134,428 + Psyr_4308 0.45 -1.2 5,134,428 + Psyr_4308 0.45 -0.9 5,134,428 + Psyr_4308 0.45 -2.1 5,134,428 + Psyr_4308 0.45 -3.5 5,134,428 + Psyr_4308 0.45 +0.1 5,134,428 + Psyr_4308 0.45 -0.6 5,134,428 + Psyr_4308 0.45 +3.8 5,134,428 + Psyr_4308 0.45 +0.2 5,134,429 - Psyr_4308 0.45 +2.4 5,134,429 - Psyr_4308 0.45 -0.6 5,134,429 - Psyr_4308 0.45 +2.9 5,134,429 - Psyr_4308 0.45 +2.1 5,134,429 - Psyr_4308 0.45 -3.7 5,134,429 - Psyr_4308 0.45 -4.1 5,134,429 - Psyr_4308 0.45 +2.7 5,134,429 - Psyr_4308 0.45 +3.5 5,134,476 + Psyr_4308 0.48 +3.8 5,134,554 + Psyr_4308 0.53 -0.9 5,134,554 + Psyr_4308 0.53 +0.2 5,134,554 + Psyr_4308 0.53 -2.6 5,134,554 + Psyr_4308 0.53 +2.7 5,134,554 + Psyr_4308 0.53 +2.4 5,134,555 - Psyr_4308 0.53 -1.6 5,134,555 - Psyr_4308 0.53 -3.1 5,134,555 - Psyr_4308 0.53 +2.1 5,134,624 + Psyr_4308 0.57 -1.9 5,134,624 + Psyr_4308 0.57 +0.1 5,134,625 - Psyr_4308 0.57 -3.8 5,134,625 - Psyr_4308 0.57 +0.1 5,134,625 - Psyr_4308 0.57 -1.9 5,134,625 - Psyr_4308 0.57 -2.6 5,134,625 - Psyr_4308 0.57 -3.0 5,134,625 - Psyr_4308 0.57 +2.9 5,134,625 - Psyr_4308 0.57 -0.7 5,134,625 - Psyr_4308 0.57 +1.7 5,134,645 + Psyr_4308 0.59 -3.3 5,134,645 + Psyr_4308 0.59 -1.8 5,134,646 - Psyr_4308 0.59 -3.7 5,134,646 - Psyr_4308 0.59 -0.5 5,134,987 - Psyr_4308 0.80 -0.4 5,134,987 - Psyr_4308 0.80 -5.0 5,134,987 - +0.1 5,134,987 - Psyr_4308 0.80 -4.8 5,135,058 + Psyr_4308 0.85 -2.3 5,135,059 - Psyr_4308 0.85 -1.8 5,135,171 - +2.4 5,135,171 - +1.7 5,135,171 - +0.1 5,135,172 + +0.3 5,135,172 + +2.1 5,135,173 - +2.9 5,135,178 + +1.7 5,135,178 + +0.1 5,135,178 + -1.7 5,135,178 + -1.2 5,135,179 - +0.3 5,135,179 - -2.9 5,135,179 - +2.7 5,135,189 - +2.1 5,135,206 + -2.2 5,135,206 + +2.7 5,135,206 + +0.1 5,135,207 - +0.1 5,135,329 - -1.8 5,135,341 - -1.4 5,135,373 + -4.1 5,135,373 + -4.2 5,135,374 - -4.7 5,135,386 + +0.1 5,135,389 + -4.0 5,135,390 - +2.4 5,135,390 - -2.3 5,135,393 - -1.9 5,135,393 - +0.1 5,135,420 - +2.9 5,135,420 - -3.0 5,135,421 + +0.1 5,135,425 - -3.3 5,135,425 - +0.9 5,135,425 - -2.4 5,135,470 - Psyr_4309 0.13 -3.2 5,135,555 + Psyr_4309 0.27 -3.5 5,135,555 + Psyr_4309 0.27 +0.1 5,135,556 - Psyr_4309 0.27 -1.9 5,135,639 + Psyr_4309 0.40 -3.7 5,135,676 - Psyr_4309 0.46 +1.7 5,135,707 - Psyr_4309 0.51 +0.1 5,135,746 + Psyr_4309 0.58 -1.7 5,135,747 - Psyr_4309 0.58 +1.7 5,135,747 - Psyr_4309 0.58 -2.8 5,135,751 + Psyr_4309 0.59 -2.3 5,135,751 + Psyr_4309 0.59 +1.7 5,135,753 + Psyr_4309 0.59 -0.9 5,135,753 + Psyr_4309 0.59 -3.3 5,135,753 + Psyr_4309 0.59 -1.5 5,135,754 - Psyr_4309 0.59 +2.7 5,135,754 - Psyr_4309 0.59 -2.7 5,135,795 + Psyr_4309 0.66 -2.2 5,135,924 + Psyr_4309 0.87 +1.7 5,135,925 - Psyr_4309 0.87 -1.7 5,135,946 + -1.9 5,135,947 - -2.9 5,135,947 - -0.6 5,135,970 + +1.1 5,135,971 - -2.0 5,135,979 + -4.6 5,136,090 + -1.7 5,136,091 - -2.5 5,136,139 + -0.3 5,136,139 + -1.1 5,136,140 - -0.8 5,136,140 - -1.3 5,136,140 - +2.4 5,136,144 - +2.4 5,136,449 + Psyr_4310 0.34 +0.3 5,136,466 + Psyr_4310 0.36 -0.7 5,136,467 - Psyr_4310 0.36 -2.4 5,136,467 - Psyr_4310 0.36 -0.3 5,136,518 - Psyr_4310 0.42 -3.2 5,136,570 + Psyr_4310 0.47 -1.3 5,136,699 - Psyr_4310 0.61 +2.1 5,136,724 + Psyr_4310 0.64 -2.3 5,136,725 - Psyr_4310 0.64 -0.3 5,136,725 - Psyr_4310 0.64 +0.1 5,136,725 - Psyr_4310 0.64 -1.8 5,136,725 - Psyr_4310 0.64 -2.2 5,136,772 + Psyr_4310 0.69 +0.1 5,136,772 + Psyr_4310 0.69 -2.5 5,136,772 + Psyr_4310 0.69 -2.9 5,136,773 - Psyr_4310 0.69 -2.0 5,136,773 - Psyr_4310 0.69 +0.1 5,136,820 + Psyr_4310 0.74 -2.3 5,136,820 + Psyr_4310 0.74 -4.3 5,136,820 + Psyr_4310 0.74 -3.7 5,136,821 - Psyr_4310 0.74 -1.3 5,136,918 + Psyr_4310 0.84 +1.1 5,136,918 + Psyr_4310 0.84 +0.1 5,136,919 - Psyr_4310 0.84 +2.7 5,136,919 - Psyr_4310 0.84 -4.0 5,136,919 - Psyr_4310 0.84 +0.1 5,136,922 + Psyr_4310 0.85 -4.3 5,136,926 - Psyr_4310 0.85 -1.9 5,136,986 + -0.6 5,136,987 - -1.8
Or see this region's nucleotide sequence