Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4158 and Psyr_4159 are separated by 180 nucleotides Psyr_4159 and Psyr_4160 overlap by 4 nucleotides Psyr_4160 and Psyr_4161 are separated by 67 nucleotides
Psyr_4158: Psyr_4158 - conserved hypothetical protein, at 4,944,687 to 4,948,502
_4158
Psyr_4159: Psyr_4159 - RNAse G, at 4,948,683 to 4,950,140
_4159
Psyr_4160: Psyr_4160 - Maf-like protein, at 4,950,137 to 4,950,739
_4160
Psyr_4161: Psyr_4161 - Rod shape-determining protein MreD, at 4,950,807 to 4,951,298
_4161
Position (kb)
4948
4949
4950
4951 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 4947.823 kb on + strand, within Psyr_4158 at 4947.823 kb on + strand, within Psyr_4158 at 4947.824 kb on - strand, within Psyr_4158 at 4947.824 kb on - strand, within Psyr_4158 at 4947.935 kb on - strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4948.222 kb on - strand at 4948.304 kb on + strand at 4948.304 kb on + strand at 4948.305 kb on - strand at 4948.305 kb on - strand at 4948.417 kb on + strand at 4948.417 kb on + strand at 4948.418 kb on - strand at 4948.418 kb on - strand at 4948.584 kb on - strand at 4948.584 kb on - strand at 4948.629 kb on + strand at 4948.630 kb on - strand at 4948.630 kb on - strand at 4948.660 kb on + strand at 4948.702 kb on + strand at 4948.703 kb on - strand at 4948.703 kb on - strand at 4948.717 kb on + strand at 4948.717 kb on + strand at 4948.717 kb on + strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.754 kb on + strand at 4948.754 kb on + strand at 4948.849 kb on + strand, within Psyr_4159 at 4948.850 kb on - strand, within Psyr_4159 at 4948.850 kb on - strand, within Psyr_4159 at 4948.889 kb on - strand, within Psyr_4159 at 4949.344 kb on + strand, within Psyr_4159 at 4949.591 kb on - strand, within Psyr_4159 at 4949.669 kb on + strand, within Psyr_4159 at 4949.669 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.773 kb on + strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.774 kb on - strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.877 kb on + strand, within Psyr_4159 at 4949.878 kb on - strand, within Psyr_4159 at 4949.922 kb on + strand, within Psyr_4159 at 4949.923 kb on - strand, within Psyr_4159 at 4949.923 kb on - strand, within Psyr_4159 at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.016 kb on + strand at 4950.017 kb on - strand at 4950.017 kb on - strand at 4950.017 kb on - strand at 4950.021 kb on - strand at 4950.174 kb on - strand at 4950.234 kb on + strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.235 kb on - strand, within Psyr_4160 at 4950.373 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.609 kb on + strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.610 kb on - strand, within Psyr_4160 at 4950.662 kb on + strand, within Psyr_4160 at 4950.662 kb on + strand, within Psyr_4160 at 4950.727 kb on - strand at 4950.740 kb on - strand at 4950.808 kb on + strand at 4950.808 kb on + strand at 4950.847 kb on + strand at 4950.848 kb on - strand at 4950.967 kb on - strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.135 kb on + strand, within Psyr_4161 at 4951.136 kb on - strand, within Psyr_4161
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,947,823 + Psyr_4158 0.82 -5.1 4,947,823 + Psyr_4158 0.82 +0.1 4,947,824 - Psyr_4158 0.82 +0.1 4,947,824 - Psyr_4158 0.82 -0.6 4,947,935 - Psyr_4158 0.85 -2.0 4,947,960 + Psyr_4158 0.86 -4.5 4,947,960 + Psyr_4158 0.86 +0.1 4,947,960 + Psyr_4158 0.86 -2.5 4,947,960 + Psyr_4158 0.86 +0.1 4,947,960 + Psyr_4158 0.86 +0.1 4,947,961 - Psyr_4158 0.86 +1.7 4,947,961 - Psyr_4158 0.86 -4.4 4,947,961 - Psyr_4158 0.86 +0.1 4,947,961 - Psyr_4158 0.86 +3.1 4,947,961 - Psyr_4158 0.86 -2.5 4,947,961 - Psyr_4158 0.86 -0.6 4,947,964 + Psyr_4158 0.86 +1.1 4,947,964 + Psyr_4158 0.86 +0.1 4,947,964 + Psyr_4158 0.86 +2.7 4,947,964 + Psyr_4158 0.86 +0.1 4,947,964 + Psyr_4158 0.86 +0.1 4,947,964 + Psyr_4158 0.86 +1.7 4,947,964 + Psyr_4158 0.86 -3.1 4,947,965 - Psyr_4158 0.86 +1.7 4,947,965 - Psyr_4158 0.86 -3.7 4,947,965 - Psyr_4158 0.86 -1.9 4,947,965 - Psyr_4158 0.86 +0.1 4,947,965 - Psyr_4158 0.86 -1.8 4,947,965 - Psyr_4158 0.86 -2.9 4,947,965 - Psyr_4158 0.86 -3.1 4,947,965 - Psyr_4158 0.86 +1.7 4,947,965 - Psyr_4158 0.86 +0.1 4,947,965 - Psyr_4158 0.86 -2.9 4,947,965 - Psyr_4158 0.86 +0.1 4,947,965 - Psyr_4158 0.86 +0.1 4,948,222 - -1.3 4,948,304 + +0.1 4,948,304 + +0.1 4,948,305 - +0.1 4,948,305 - -3.6 4,948,417 + +0.1 4,948,417 + -3.2 4,948,418 - -4.6 4,948,418 - +1.7 4,948,584 - -3.2 4,948,584 - +0.4 4,948,629 + +1.1 4,948,630 - +2.1 4,948,630 - +2.1 4,948,660 + +2.1 4,948,702 + +0.1 4,948,703 - +0.3 4,948,703 - -1.5 4,948,717 + +0.1 4,948,717 + +0.1 4,948,717 + -1.1 4,948,718 - +1.1 4,948,718 - -1.8 4,948,718 - -3.0 4,948,718 - -1.9 4,948,754 + +1.1 4,948,754 + -2.8 4,948,849 + Psyr_4159 0.11 +2.7 4,948,850 - Psyr_4159 0.11 +1.7 4,948,850 - Psyr_4159 0.11 -2.6 4,948,889 - Psyr_4159 0.14 -0.4 4,949,344 + Psyr_4159 0.45 +3.1 4,949,591 - Psyr_4159 0.62 -2.5 4,949,669 + Psyr_4159 0.68 +0.1 4,949,669 + Psyr_4159 0.68 -4.5 4,949,773 + Psyr_4159 0.75 -4.1 4,949,773 + Psyr_4159 0.75 -0.7 4,949,773 + Psyr_4159 0.75 -1.3 4,949,773 + Psyr_4159 0.75 -1.7 4,949,773 + Psyr_4159 0.75 +0.1 4,949,773 + Psyr_4159 0.75 +1.7 4,949,773 + Psyr_4159 0.75 -1.5 4,949,774 - Psyr_4159 0.75 -0.8 4,949,774 - Psyr_4159 0.75 -1.5 4,949,774 - Psyr_4159 0.75 -0.6 4,949,774 - Psyr_4159 0.75 -3.5 4,949,774 - Psyr_4159 0.75 -1.3 4,949,774 - Psyr_4159 0.75 -0.4 4,949,774 - Psyr_4159 0.75 +0.1 4,949,774 - Psyr_4159 0.75 -3.2 4,949,877 + Psyr_4159 0.82 +0.5 4,949,877 + Psyr_4159 0.82 -2.5 4,949,877 + Psyr_4159 0.82 -3.0 4,949,877 + Psyr_4159 0.82 -3.2 4,949,877 + Psyr_4159 0.82 -3.1 4,949,878 - Psyr_4159 0.82 -2.8 4,949,922 + Psyr_4159 0.85 +2.7 4,949,923 - Psyr_4159 0.85 +0.1 4,949,923 - Psyr_4159 0.85 -3.4 4,950,016 + +1.1 4,950,016 + -3.5 4,950,016 + +2.1 4,950,016 + +0.1 4,950,016 + -3.4 4,950,017 - -3.8 4,950,017 - -4.0 4,950,017 - +0.1 4,950,021 - -1.8 4,950,174 - -1.0 4,950,234 + Psyr_4160 0.16 -1.3 4,950,235 - Psyr_4160 0.16 +1.7 4,950,235 - Psyr_4160 0.16 -0.5 4,950,235 - Psyr_4160 0.16 -0.2 4,950,373 + Psyr_4160 0.39 -1.9 4,950,609 + Psyr_4160 0.78 +0.1 4,950,609 + Psyr_4160 0.78 -2.3 4,950,609 + Psyr_4160 0.78 +2.1 4,950,609 + Psyr_4160 0.78 -2.1 4,950,610 - Psyr_4160 0.78 -0.8 4,950,610 - Psyr_4160 0.78 -2.1 4,950,662 + Psyr_4160 0.87 -1.4 4,950,662 + Psyr_4160 0.87 -2.6 4,950,727 - -3.4 4,950,740 - +4.5 4,950,808 + +2.4 4,950,808 + -1.2 4,950,847 + -3.2 4,950,848 - -2.7 4,950,967 - Psyr_4161 0.33 -0.7 4,951,135 + Psyr_4161 0.67 +1.0 4,951,135 + Psyr_4161 0.67 -1.5 4,951,136 - Psyr_4161 0.67 +4.9
Or see this region's nucleotide sequence