Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4061 and Psyr_4062 are separated by 130 nucleotides Psyr_4062 and Psyr_4063 are separated by 226 nucleotides
Psyr_4061: Psyr_4061 - imelysin, Metallo peptidase, MEROPS family M75, at 4,844,672 to 4,846,048
_4061
Psyr_4062: Psyr_4062 - Pyridoxamine 5'-phosphate oxidase-related protein, at 4,846,179 to 4,846,808
_4062
Psyr_4063: Psyr_4063 - Protein of unknown function DUF1111, at 4,847,035 to 4,848,462
_4063
Position (kb) 4846
4847 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4845.440 kb on + strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061 at 4845.521 kb on + strand, within Psyr_4061 at 4845.521 kb on + strand, within Psyr_4061 at 4845.677 kb on - strand, within Psyr_4061 at 4845.698 kb on + strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.725 kb on + strand, within Psyr_4061 at 4845.726 kb on - strand, within Psyr_4061 at 4845.737 kb on + strand, within Psyr_4061 at 4846.183 kb on + strand at 4846.183 kb on + strand at 4846.183 kb on + strand at 4846.183 kb on + strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.190 kb on + strand at 4846.223 kb on - strand at 4846.354 kb on + strand, within Psyr_4062 at 4846.355 kb on - strand, within Psyr_4062 at 4846.441 kb on - strand, within Psyr_4062 at 4846.570 kb on + strand, within Psyr_4062 at 4846.570 kb on + strand, within Psyr_4062 at 4846.694 kb on - strand, within Psyr_4062 at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.750 kb on + strand at 4846.751 kb on - strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.889 kb on - strand at 4846.889 kb on - strand at 4846.889 kb on - strand at 4846.992 kb on + strand at 4846.992 kb on + strand at 4846.993 kb on - strand at 4847.034 kb on + strand at 4847.035 kb on - strand at 4847.035 kb on - strand at 4847.035 kb on - strand at 4847.035 kb on - strand at 4847.035 kb on - strand at 4847.054 kb on + strand at 4847.442 kb on + strand, within Psyr_4063 at 4847.443 kb on - strand, within Psyr_4063 at 4847.443 kb on - strand, within Psyr_4063 at 4847.444 kb on + strand, within Psyr_4063 at 4847.445 kb on - strand, within Psyr_4063 at 4847.445 kb on - strand, within Psyr_4063 at 4847.445 kb on - strand, within Psyr_4063 at 4847.445 kb on - strand, within Psyr_4063 at 4847.445 kb on - strand, within Psyr_4063 at 4847.543 kb on - strand, within Psyr_4063 at 4847.543 kb on - strand, within Psyr_4063
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,845,440 + Psyr_4061 0.56 -2.4 4,845,441 - Psyr_4061 0.56 -1.0 4,845,521 + Psyr_4061 0.62 +1.8 4,845,521 + Psyr_4061 0.62 -5.2 4,845,677 - Psyr_4061 0.73 -2.5 4,845,698 + Psyr_4061 0.75 -1.1 4,845,699 - Psyr_4061 0.75 -1.3 4,845,699 - Psyr_4061 0.75 -1.6 4,845,725 + Psyr_4061 0.76 -0.0 4,845,726 - Psyr_4061 0.77 +3.4 4,845,737 + Psyr_4061 0.77 -1.2 4,846,183 + -2.5 4,846,183 + -0.9 4,846,183 + -3.8 4,846,183 + +3.6 4,846,184 - -2.3 4,846,184 - +3.4 4,846,184 - +2.4 4,846,184 - +3.7 4,846,184 - -0.8 4,846,184 - -2.7 4,846,184 - -2.0 4,846,184 - -0.7 4,846,190 + -1.3 4,846,223 - +1.5 4,846,354 + Psyr_4062 0.28 +1.1 4,846,355 - Psyr_4062 0.28 +0.5 4,846,441 - Psyr_4062 0.42 +1.1 4,846,570 + Psyr_4062 0.62 +1.7 4,846,570 + Psyr_4062 0.62 +0.1 4,846,694 - Psyr_4062 0.82 +0.3 4,846,750 + -1.9 4,846,750 + +2.7 4,846,750 + +0.1 4,846,750 + -0.9 4,846,750 + +1.0 4,846,750 + -3.1 4,846,750 + -4.2 4,846,751 - +0.1 4,846,835 + +0.1 4,846,835 + -0.0 4,846,835 + +0.1 4,846,835 + +4.4 4,846,835 + +0.4 4,846,835 + -4.0 4,846,835 + +0.1 4,846,836 - +1.1 4,846,836 - -1.5 4,846,836 - +0.1 4,846,836 - -0.4 4,846,836 - -1.1 4,846,889 - +0.1 4,846,889 - +2.4 4,846,889 - +2.1 4,846,992 + -0.4 4,846,992 + +0.1 4,846,993 - +0.1 4,847,034 + +3.9 4,847,035 - +3.1 4,847,035 - -1.7 4,847,035 - -0.9 4,847,035 - +3.9 4,847,035 - -2.7 4,847,054 + +0.5 4,847,442 + Psyr_4063 0.29 +0.8 4,847,443 - Psyr_4063 0.29 +4.0 4,847,443 - Psyr_4063 0.29 -0.3 4,847,444 + Psyr_4063 0.29 -1.4 4,847,445 - Psyr_4063 0.29 +2.4 4,847,445 - Psyr_4063 0.29 +4.6 4,847,445 - Psyr_4063 0.29 -1.4 4,847,445 - Psyr_4063 0.29 -0.3 4,847,445 - Psyr_4063 0.29 -2.0 4,847,543 - Psyr_4063 0.36 -2.7 4,847,543 - Psyr_4063 0.36 -3.0
Or see this region's nucleotide sequence