Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4033 and Psyr_4034 are separated by 258 nucleotides Psyr_4034 and Psyr_4035 are separated by 41 nucleotides
Psyr_4033: Psyr_4033 - YD repeat protein, at 4,804,230 to 4,807,049
_4033
Psyr_4034: Psyr_4034 - hypothetical protein, at 4,807,308 to 4,810,253
_4034
Psyr_4035: Psyr_4035 - insecticidal toxin protein, putative, at 4,810,295 to 4,815,148
_4035
Position (kb) 4807
4808
4809
4810
4811 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4806.545 kb on - strand, within Psyr_4033 at 4806.605 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.694 kb on + strand, within Psyr_4033 at 4806.695 kb on - strand, within Psyr_4033 at 4806.695 kb on - strand, within Psyr_4033 at 4806.739 kb on - strand, within Psyr_4033 at 4806.856 kb on + strand at 4806.856 kb on + strand at 4806.856 kb on + strand at 4806.857 kb on - strand at 4806.857 kb on - strand at 4806.857 kb on - strand at 4806.919 kb on + strand at 4806.920 kb on - strand at 4806.920 kb on - strand at 4806.967 kb on + strand at 4807.026 kb on - strand at 4807.091 kb on + strand at 4807.091 kb on + strand at 4807.091 kb on + strand at 4807.170 kb on - strand at 4807.171 kb on + strand at 4807.171 kb on + strand at 4807.172 kb on - strand at 4807.172 kb on - strand at 4807.172 kb on - strand at 4807.205 kb on - strand at 4807.253 kb on + strand at 4807.333 kb on + strand at 4807.333 kb on + strand at 4807.334 kb on - strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.482 kb on - strand at 4807.482 kb on - strand at 4807.482 kb on - strand at 4807.622 kb on - strand, within Psyr_4034 at 4807.691 kb on - strand, within Psyr_4034 at 4807.716 kb on + strand, within Psyr_4034 at 4807.717 kb on - strand, within Psyr_4034 at 4807.857 kb on - strand, within Psyr_4034 at 4807.882 kb on + strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.903 kb on - strand, within Psyr_4034 at 4807.903 kb on - strand, within Psyr_4034 at 4807.903 kb on - strand, within Psyr_4034 at 4807.937 kb on + strand, within Psyr_4034 at 4807.937 kb on + strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.942 kb on - strand, within Psyr_4034 at 4807.942 kb on - strand, within Psyr_4034 at 4807.983 kb on + strand, within Psyr_4034 at 4807.983 kb on + strand, within Psyr_4034 at 4807.984 kb on - strand, within Psyr_4034 at 4808.053 kb on - strand, within Psyr_4034 at 4808.101 kb on - strand, within Psyr_4034 at 4808.253 kb on + strand, within Psyr_4034 at 4808.253 kb on + strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.265 kb on + strand, within Psyr_4034 at 4808.295 kb on - strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.475 kb on + strand, within Psyr_4034 at 4808.476 kb on - strand, within Psyr_4034 at 4808.693 kb on - strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.724 kb on + strand, within Psyr_4034 at 4809.271 kb on + strand, within Psyr_4034 at 4809.272 kb on - strand, within Psyr_4034 at 4809.272 kb on - strand, within Psyr_4034 at 4809.295 kb on + strand, within Psyr_4034 at 4809.296 kb on - strand, within Psyr_4034 at 4809.432 kb on - strand, within Psyr_4034 at 4809.441 kb on + strand, within Psyr_4034 at 4809.460 kb on + strand, within Psyr_4034 at 4809.460 kb on + strand, within Psyr_4034 at 4809.685 kb on + strand, within Psyr_4034 at 4809.685 kb on + strand, within Psyr_4034 at 4809.727 kb on + strand, within Psyr_4034 at 4809.775 kb on - strand, within Psyr_4034 at 4809.829 kb on + strand, within Psyr_4034 at 4809.894 kb on + strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.960 kb on + strand at 4809.960 kb on + strand at 4809.960 kb on + strand at 4809.996 kb on - strand at 4810.092 kb on - strand at 4810.142 kb on + strand at 4810.142 kb on + strand at 4810.143 kb on - strand at 4810.143 kb on - strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.265 kb on + strand at 4810.352 kb on + strand at 4810.353 kb on - strand at 4810.355 kb on + strand at 4810.355 kb on + strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.384 kb on + strand at 4810.384 kb on + strand at 4810.385 kb on - strand at 4810.437 kb on - strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.637 kb on - strand at 4810.665 kb on - strand at 4810.665 kb on - strand at 4810.665 kb on - strand at 4810.665 kb on - strand at 4810.666 kb on + strand at 4810.666 kb on + strand at 4810.667 kb on - strand at 4810.700 kb on + strand at 4810.723 kb on + strand at 4810.775 kb on + strand at 4810.775 kb on + strand at 4810.776 kb on - strand at 4810.776 kb on - strand at 4810.823 kb on + strand, within Psyr_4035 at 4810.823 kb on + strand, within Psyr_4035 at 4810.823 kb on + strand, within Psyr_4035 at 4810.823 kb on + strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.856 kb on + strand, within Psyr_4035 at 4810.856 kb on + strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.859 kb on + strand, within Psyr_4035 at 4810.859 kb on + strand, within Psyr_4035 at 4810.859 kb on + strand, within Psyr_4035 at 4810.859 kb on + strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.888 kb on + strand, within Psyr_4035 at 4810.888 kb on + strand, within Psyr_4035 at 4810.889 kb on - strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.893 kb on - strand, within Psyr_4035 at 4810.893 kb on - strand, within Psyr_4035 at 4811.021 kb on - strand, within Psyr_4035 at 4811.021 kb on - strand, within Psyr_4035 at 4811.048 kb on + strand, within Psyr_4035 at 4811.048 kb on + strand, within Psyr_4035 at 4811.048 kb on + strand, within Psyr_4035 at 4811.049 kb on - strand, within Psyr_4035 at 4811.128 kb on + strand, within Psyr_4035 at 4811.128 kb on + strand, within Psyr_4035 at 4811.128 kb on + strand, within Psyr_4035 at 4811.129 kb on - strand, within Psyr_4035 at 4811.129 kb on - strand, within Psyr_4035 at 4811.227 kb on + strand, within Psyr_4035 at 4811.228 kb on - strand, within Psyr_4035 at 4811.228 kb on - strand, within Psyr_4035 at 4811.235 kb on - strand, within Psyr_4035
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,806,545 - Psyr_4033 0.82 -1.2 4,806,605 + Psyr_4033 0.84 -0.0 4,806,631 + Psyr_4033 0.85 +2.1 4,806,631 + Psyr_4033 0.85 +1.7 4,806,631 + Psyr_4033 0.85 -2.9 4,806,631 + Psyr_4033 0.85 -3.4 4,806,694 + Psyr_4033 0.87 -2.3 4,806,695 - Psyr_4033 0.87 -1.7 4,806,695 - Psyr_4033 0.87 +2.7 4,806,739 - Psyr_4033 0.89 +0.1 4,806,856 + +1.7 4,806,856 + +1.1 4,806,856 + -0.9 4,806,857 - +0.2 4,806,857 - +0.2 4,806,857 - -2.2 4,806,919 + +0.1 4,806,920 - -3.6 4,806,920 - +2.4 4,806,967 + +0.8 4,807,026 - -1.2 4,807,091 + -1.5 4,807,091 + +1.7 4,807,091 + -2.0 4,807,170 - -1.1 4,807,171 + +0.1 4,807,171 + -2.1 4,807,172 - +0.1 4,807,172 - +1.1 4,807,172 - +3.4 4,807,205 - -1.4 4,807,253 + +1.7 4,807,333 + +0.1 4,807,333 + -3.9 4,807,334 - -4.5 4,807,481 + -0.0 4,807,481 + -2.7 4,807,481 + -1.2 4,807,481 + -2.8 4,807,481 + +0.1 4,807,482 - +1.0 4,807,482 - -1.7 4,807,482 - -1.1 4,807,622 - Psyr_4034 0.11 +2.9 4,807,691 - Psyr_4034 0.13 +0.1 4,807,716 + Psyr_4034 0.14 -2.3 4,807,717 - Psyr_4034 0.14 +0.7 4,807,857 - Psyr_4034 0.19 +0.4 4,807,882 + Psyr_4034 0.19 -2.7 4,807,883 - Psyr_4034 0.20 +1.1 4,807,883 - Psyr_4034 0.20 +0.1 4,807,886 + Psyr_4034 0.20 +1.1 4,807,886 + Psyr_4034 0.20 -3.6 4,807,886 + Psyr_4034 0.20 +2.9 4,807,886 + Psyr_4034 0.20 +0.1 4,807,886 + Psyr_4034 0.20 +1.1 4,807,886 + Psyr_4034 0.20 +1.7 4,807,887 - Psyr_4034 0.20 -2.3 4,807,887 - Psyr_4034 0.20 +0.0 4,807,887 - Psyr_4034 0.20 -2.8 4,807,887 - Psyr_4034 0.20 -0.7 4,807,902 + Psyr_4034 0.20 -0.9 4,807,903 - Psyr_4034 0.20 -5.0 4,807,903 - Psyr_4034 0.20 -1.0 4,807,903 - Psyr_4034 0.20 -2.2 4,807,937 + Psyr_4034 0.21 +0.4 4,807,937 + Psyr_4034 0.21 +3.9 4,807,938 - Psyr_4034 0.21 -4.1 4,807,938 - Psyr_4034 0.21 +0.6 4,807,938 - Psyr_4034 0.21 +2.7 4,807,938 - Psyr_4034 0.21 -1.2 4,807,938 - Psyr_4034 0.21 +2.4 4,807,942 - Psyr_4034 0.22 +4.6 4,807,942 - Psyr_4034 0.22 -1.5 4,807,983 + Psyr_4034 0.23 -2.5 4,807,983 + Psyr_4034 0.23 -1.9 4,807,984 - Psyr_4034 0.23 +2.4 4,808,053 - Psyr_4034 0.25 +0.1 4,808,101 - Psyr_4034 0.27 -1.1 4,808,253 + Psyr_4034 0.32 +2.9 4,808,253 + Psyr_4034 0.32 +3.9 4,808,254 - Psyr_4034 0.32 +0.1 4,808,254 - Psyr_4034 0.32 -0.9 4,808,254 - Psyr_4034 0.32 +0.1 4,808,265 + Psyr_4034 0.32 +5.1 4,808,295 - Psyr_4034 0.34 +3.8 4,808,376 + Psyr_4034 0.36 -2.6 4,808,376 + Psyr_4034 0.36 +0.1 4,808,377 - Psyr_4034 0.36 +1.7 4,808,377 - Psyr_4034 0.36 +1.7 4,808,377 - Psyr_4034 0.36 -4.2 4,808,377 - Psyr_4034 0.36 +3.3 4,808,377 - Psyr_4034 0.36 -1.2 4,808,377 - Psyr_4034 0.36 +1.3 4,808,475 + Psyr_4034 0.40 +1.0 4,808,476 - Psyr_4034 0.40 +1.1 4,808,693 - Psyr_4034 0.47 -2.4 4,808,696 + Psyr_4034 0.47 +4.0 4,808,696 + Psyr_4034 0.47 +3.6 4,808,696 + Psyr_4034 0.47 -1.7 4,808,696 + Psyr_4034 0.47 +3.6 4,808,696 + Psyr_4034 0.47 +3.1 4,808,696 + Psyr_4034 0.47 +0.1 4,808,696 + Psyr_4034 0.47 +2.9 4,808,696 + Psyr_4034 0.47 +0.1 4,808,697 - Psyr_4034 0.47 +0.8 4,808,697 - Psyr_4034 0.47 +1.4 4,808,697 - Psyr_4034 0.47 +3.9 4,808,697 - Psyr_4034 0.47 +1.7 4,808,697 - Psyr_4034 0.47 -2.4 4,808,724 + Psyr_4034 0.48 -3.1 4,809,271 + Psyr_4034 0.67 +2.1 4,809,272 - Psyr_4034 0.67 +0.7 4,809,272 - Psyr_4034 0.67 -0.3 4,809,295 + Psyr_4034 0.67 -1.9 4,809,296 - Psyr_4034 0.67 +0.6 4,809,432 - Psyr_4034 0.72 -0.6 4,809,441 + Psyr_4034 0.72 -4.0 4,809,460 + Psyr_4034 0.73 -0.0 4,809,460 + Psyr_4034 0.73 -0.9 4,809,685 + Psyr_4034 0.81 +3.6 4,809,685 + Psyr_4034 0.81 -1.1 4,809,727 + Psyr_4034 0.82 +2.1 4,809,775 - Psyr_4034 0.84 +1.7 4,809,829 + Psyr_4034 0.86 +2.7 4,809,894 + Psyr_4034 0.88 +2.4 4,809,895 - Psyr_4034 0.88 -0.6 4,809,895 - Psyr_4034 0.88 -0.5 4,809,960 + -2.6 4,809,960 + -1.5 4,809,960 + +0.1 4,809,996 - +0.1 4,810,092 - -4.1 4,810,142 + +0.8 4,810,142 + +0.1 4,810,143 - -0.8 4,810,143 - -0.2 4,810,168 + +1.7 4,810,168 + +2.1 4,810,168 + -0.9 4,810,169 - +3.8 4,810,169 - -0.6 4,810,169 - +0.2 4,810,169 - +1.1 4,810,169 - +2.4 4,810,265 + +3.6 4,810,352 + -3.4 4,810,353 - +1.7 4,810,355 + +1.1 4,810,355 + -0.1 4,810,356 - +0.1 4,810,356 - +2.7 4,810,356 - -0.7 4,810,356 - +1.3 4,810,356 - +4.3 4,810,356 - +3.6 4,810,384 + +0.1 4,810,384 + -4.1 4,810,385 - +3.6 4,810,437 - -0.7 4,810,487 + -4.2 4,810,487 + -3.6 4,810,487 + -3.4 4,810,487 + +1.1 4,810,487 + -1.8 4,810,487 + -3.1 4,810,487 + +2.7 4,810,487 + +3.1 4,810,488 - -2.1 4,810,488 - +3.1 4,810,488 - +0.7 4,810,488 - -1.9 4,810,488 - -0.6 4,810,637 - -1.7 4,810,665 - -1.3 4,810,665 - -0.8 4,810,665 - +0.1 4,810,665 - -4.5 4,810,666 + -0.4 4,810,666 + -4.5 4,810,667 - -1.1 4,810,700 + +1.7 4,810,723 + +1.1 4,810,775 + -1.9 4,810,775 + +0.1 4,810,776 - -1.0 4,810,776 - -3.7 4,810,823 + Psyr_4035 0.11 +3.3 4,810,823 + Psyr_4035 0.11 +0.1 4,810,823 + Psyr_4035 0.11 -2.3 4,810,823 + Psyr_4035 0.11 -2.7 4,810,824 - Psyr_4035 0.11 -0.9 4,810,824 - Psyr_4035 0.11 -0.9 4,810,824 - Psyr_4035 0.11 +0.6 4,810,856 + Psyr_4035 0.12 -0.7 4,810,856 + Psyr_4035 0.12 +0.1 4,810,857 - Psyr_4035 0.12 +4.1 4,810,857 - Psyr_4035 0.12 -2.3 4,810,857 - Psyr_4035 0.12 -2.5 4,810,859 + Psyr_4035 0.12 -1.3 4,810,859 + Psyr_4035 0.12 -1.5 4,810,859 + Psyr_4035 0.12 -4.8 4,810,859 + Psyr_4035 0.12 -3.0 4,810,860 - Psyr_4035 0.12 +0.4 4,810,860 - Psyr_4035 0.12 +0.1 4,810,860 - Psyr_4035 0.12 +0.1 4,810,860 - Psyr_4035 0.12 -1.2 4,810,860 - Psyr_4035 0.12 -3.4 4,810,860 - Psyr_4035 0.12 -1.1 4,810,860 - Psyr_4035 0.12 +3.9 4,810,888 + Psyr_4035 0.12 -1.4 4,810,888 + Psyr_4035 0.12 -2.8 4,810,889 - Psyr_4035 0.12 -1.6 4,810,892 + Psyr_4035 0.12 -2.5 4,810,892 + Psyr_4035 0.12 +0.1 4,810,892 + Psyr_4035 0.12 -2.5 4,810,893 - Psyr_4035 0.12 +1.1 4,810,893 - Psyr_4035 0.12 -1.2 4,811,021 - Psyr_4035 0.15 -1.8 4,811,021 - Psyr_4035 0.15 -0.5 4,811,048 + Psyr_4035 0.16 -2.3 4,811,048 + Psyr_4035 0.16 +2.4 4,811,048 + Psyr_4035 0.16 +0.1 4,811,049 - Psyr_4035 0.16 -0.8 4,811,128 + Psyr_4035 0.17 +1.7 4,811,128 + Psyr_4035 0.17 -1.7 4,811,128 + Psyr_4035 0.17 -2.0 4,811,129 - Psyr_4035 0.17 -3.1 4,811,129 - Psyr_4035 0.17 -1.1 4,811,227 + Psyr_4035 0.19 +1.1 4,811,228 - Psyr_4035 0.19 +0.1 4,811,228 - Psyr_4035 0.19 -3.1 4,811,235 - Psyr_4035 0.19 -3.5
Or see this region's nucleotide sequence