Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4030

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4029 and Psyr_4030 are separated by 113 nucleotidesPsyr_4030 and Psyr_4031 are separated by 179 nucleotides Psyr_4029: Psyr_4029 - pyruvate kinase, at 4,796,791 to 4,798,242 _4029 Psyr_4030: Psyr_4030 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 4,798,356 to 4,799,294 _4030 Psyr_4031: Psyr_4031 - fumarase, at 4,799,474 to 4,800,997 _4031 Position (kb) 4798 4799 4800Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 4797.358 kb on + strand, within Psyr_4029at 4797.400 kb on + strand, within Psyr_4029at 4797.715 kb on + strand, within Psyr_4029at 4797.716 kb on - strand, within Psyr_4029at 4797.793 kb on - strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.895 kb on + strand, within Psyr_4029at 4797.896 kb on - strand, within Psyr_4029at 4797.896 kb on - strand, within Psyr_4029at 4797.997 kb on + strand, within Psyr_4029at 4797.997 kb on + strand, within Psyr_4029at 4797.998 kb on - strand, within Psyr_4029at 4798.020 kb on + strand, within Psyr_4029at 4798.055 kb on - strand, within Psyr_4029at 4798.055 kb on - strand, within Psyr_4029at 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.180 kb on + strandat 4798.181 kb on - strandat 4798.181 kb on - strandat 4798.318 kb on - strandat 4798.341 kb on + strandat 4798.341 kb on + strandat 4798.341 kb on + strandat 4798.342 kb on - strandat 4798.342 kb on - strandat 4798.342 kb on - strandat 4798.394 kb on + strandat 4798.414 kb on + strandat 4798.414 kb on + strandat 4798.414 kb on + strandat 4798.415 kb on - strandat 4798.415 kb on - strandat 4798.415 kb on - strandat 4798.588 kb on + strand, within Psyr_4030at 4798.588 kb on + strand, within Psyr_4030at 4798.589 kb on - strand, within Psyr_4030at 4798.589 kb on - strand, within Psyr_4030at 4798.940 kb on - strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.198 kb on + strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.199 kb on - strand, within Psyr_4030at 4799.201 kb on - strandat 4799.267 kb on + strandat 4799.267 kb on + strandat 4799.268 kb on - strandat 4799.268 kb on - strandat 4799.268 kb on - strandat 4799.328 kb on + strandat 4799.328 kb on + strandat 4799.328 kb on + strandat 4799.329 kb on - strandat 4799.329 kb on - strandat 4799.352 kb on + strandat 4799.353 kb on - strandat 4799.354 kb on + strandat 4799.354 kb on + strandat 4799.354 kb on + strandat 4799.354 kb on + strandat 4799.354 kb on + strandat 4799.431 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strandat 4799.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,797,358 + Psyr_4029 0.39 -3.2
4,797,400 + Psyr_4029 0.42 -1.0
4,797,715 + Psyr_4029 0.64 +1.1
4,797,716 - Psyr_4029 0.64 +0.1
4,797,793 - Psyr_4029 0.69 +2.1
4,797,895 + Psyr_4029 0.76 -4.9
4,797,895 + Psyr_4029 0.76 +1.7
4,797,895 + Psyr_4029 0.76 -1.2
4,797,895 + Psyr_4029 0.76 -3.5
4,797,895 + Psyr_4029 0.76 -1.4
4,797,895 + Psyr_4029 0.76 +1.1
4,797,896 - Psyr_4029 0.76 -2.0
4,797,896 - Psyr_4029 0.76 +3.3
4,797,997 + Psyr_4029 0.83 +1.1
4,797,997 + Psyr_4029 0.83 -1.6
4,797,998 - Psyr_4029 0.83 +3.1
4,798,020 + Psyr_4029 0.85 -0.0
4,798,055 - Psyr_4029 0.87 -1.5
4,798,055 - Psyr_4029 0.87 +1.7
4,798,180 + -1.4
4,798,180 + -1.6
4,798,180 + -4.1
4,798,181 - -2.9
4,798,181 - -2.1
4,798,318 - +0.1
4,798,341 + +1.1
4,798,341 + -4.2
4,798,341 + -2.2
4,798,342 - +0.5
4,798,342 - -0.2
4,798,342 - -1.9
4,798,394 + +0.7
4,798,414 + +3.3
4,798,414 + +0.3
4,798,414 + -1.7
4,798,415 - +3.0
4,798,415 - -0.8
4,798,415 - +0.6
4,798,588 + Psyr_4030 0.25 +1.1
4,798,588 + Psyr_4030 0.25 -0.9
4,798,589 - Psyr_4030 0.25 +1.7
4,798,589 - Psyr_4030 0.25 +4.1
4,798,940 - Psyr_4030 0.62 -0.6
4,799,198 + Psyr_4030 0.90 -1.7
4,799,198 + Psyr_4030 0.90 -0.4
4,799,198 + Psyr_4030 0.90 +3.4
4,799,198 + Psyr_4030 0.90 +0.2
4,799,198 + Psyr_4030 0.90 +2.1
4,799,198 + Psyr_4030 0.90 -0.2
4,799,198 + Psyr_4030 0.90 +3.3
4,799,198 + Psyr_4030 0.90 -0.5
4,799,198 + Psyr_4030 0.90 -1.5
4,799,198 + Psyr_4030 0.90 -0.1
4,799,198 + Psyr_4030 0.90 -1.3
4,799,198 + Psyr_4030 0.90 -0.7
4,799,198 + Psyr_4030 0.90 -2.2
4,799,198 + Psyr_4030 0.90 -0.9
4,799,198 + Psyr_4030 0.90 +1.7
4,799,198 + Psyr_4030 0.90 -0.5
4,799,198 + Psyr_4030 0.90 +0.5
4,799,198 + Psyr_4030 0.90 -0.6
4,799,198 + Psyr_4030 0.90 +2.1
4,799,198 + Psyr_4030 0.90 -1.2
4,799,198 + Psyr_4030 0.90 -0.9
4,799,198 + Psyr_4030 0.90 +2.7
4,799,199 - Psyr_4030 0.90 +4.9
4,799,199 - Psyr_4030 0.90 -3.1
4,799,199 - Psyr_4030 0.90 +3.4
4,799,199 - Psyr_4030 0.90 +3.8
4,799,199 - Psyr_4030 0.90 +4.7
4,799,199 - Psyr_4030 0.90 -0.3
4,799,199 - Psyr_4030 0.90 +1.2
4,799,199 - Psyr_4030 0.90 -0.7
4,799,199 - Psyr_4030 0.90 -1.2
4,799,201 - +2.4
4,799,267 + +2.1
4,799,267 + +2.4
4,799,268 - +2.1
4,799,268 - +1.6
4,799,268 - +1.1
4,799,328 + -0.1
4,799,328 + -0.4
4,799,328 + +2.1
4,799,329 - +3.1
4,799,329 - +1.7
4,799,352 + +0.1
4,799,353 - +1.1
4,799,354 + +4.1
4,799,354 + -1.5
4,799,354 + -1.2
4,799,354 + +3.1
4,799,354 + -2.5
4,799,431 + -0.1
4,799,436 + -0.7
4,799,436 + +3.6
4,799,436 + +0.1
4,799,436 + -1.9
4,799,436 + +0.3
4,799,436 + -1.3
4,799,436 + +2.4
4,799,436 + +2.1

Or see this region's nucleotide sequence