Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4005 and Psyr_4006 are separated by 479 nucleotides Psyr_4006 and Psyr_4007 are separated by 255 nucleotides
Psyr_4005: Psyr_4005 - conserved hypothetical protein, at 4,768,555 to 4,769,688
_4005
Psyr_4006: Psyr_4006 - transcriptional regulator, TetR family, at 4,770,168 to 4,770,827
_4006
Psyr_4007: Psyr_4007 - Secretion protein HlyD, at 4,771,083 to 4,772,243
_4007
Position (kb) 4770
4771 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4769.210 kb on + strand, within Psyr_4005 at 4769.210 kb on + strand, within Psyr_4005 at 4769.211 kb on - strand, within Psyr_4005 at 4769.228 kb on + strand, within Psyr_4005 at 4769.229 kb on - strand, within Psyr_4005 at 4769.258 kb on + strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.259 kb on - strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.339 kb on + strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.340 kb on - strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.501 kb on + strand, within Psyr_4005 at 4769.502 kb on - strand, within Psyr_4005 at 4769.565 kb on - strand, within Psyr_4005 at 4769.565 kb on - strand, within Psyr_4005 at 4769.590 kb on + strand at 4769.590 kb on + strand at 4769.590 kb on + strand at 4769.591 kb on - strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.848 kb on + strand at 4769.849 kb on - strand at 4769.849 kb on - strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.966 kb on + strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.967 kb on - strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.972 kb on + strand at 4769.973 kb on - strand at 4769.973 kb on - strand at 4769.987 kb on + strand at 4769.987 kb on + strand at 4769.987 kb on + strand at 4769.998 kb on + strand at 4769.998 kb on + strand at 4769.999 kb on - strand at 4769.999 kb on - strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.003 kb on + strand at 4770.004 kb on - strand at 4770.004 kb on - strand at 4770.029 kb on + strand at 4770.029 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.085 kb on + strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.086 kb on - strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.191 kb on + strand at 4770.301 kb on + strand, within Psyr_4006 at 4770.301 kb on + strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.302 kb on - strand, within Psyr_4006 at 4770.319 kb on + strand, within Psyr_4006 at 4770.319 kb on + strand, within Psyr_4006 at 4770.423 kb on + strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.424 kb on - strand, within Psyr_4006 at 4770.665 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.682 kb on + strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.683 kb on - strand, within Psyr_4006 at 4770.754 kb on + strand, within Psyr_4006 at 4770.833 kb on + strand at 4770.834 kb on - strand at 4770.834 kb on - strand at 4770.834 kb on - strand at 4770.834 kb on - strand at 4770.885 kb on + strand at 4770.942 kb on - strand at 4771.008 kb on + strand at 4771.009 kb on - strand at 4771.009 kb on - strand at 4771.009 kb on - strand at 4771.009 kb on - strand at 4771.009 kb on - strand at 4771.013 kb on - strand at 4771.045 kb on + strand at 4771.045 kb on + strand at 4771.045 kb on + strand at 4771.046 kb on - strand at 4771.103 kb on + strand at 4771.196 kb on - strand at 4771.196 kb on - strand at 4771.205 kb on + strand, within Psyr_4007 at 4771.224 kb on + strand, within Psyr_4007 at 4771.224 kb on + strand, within Psyr_4007 at 4771.224 kb on + strand, within Psyr_4007 at 4771.224 kb on + strand, within Psyr_4007 at 4771.225 kb on - strand, within Psyr_4007 at 4771.225 kb on - strand, within Psyr_4007 at 4771.225 kb on - strand, within Psyr_4007 at 4771.377 kb on + strand, within Psyr_4007 at 4771.377 kb on + strand, within Psyr_4007 at 4771.378 kb on - strand, within Psyr_4007 at 4771.378 kb on - strand at 4771.440 kb on + strand, within Psyr_4007 at 4771.440 kb on + strand, within Psyr_4007 at 4771.441 kb on - strand, within Psyr_4007 at 4771.551 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.571 kb on + strand, within Psyr_4007 at 4771.572 kb on - strand, within Psyr_4007 at 4771.572 kb on - strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.671 kb on + strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.672 kb on - strand, within Psyr_4007 at 4771.797 kb on + strand, within Psyr_4007
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,769,210 + Psyr_4005 0.58 -2.1 4,769,210 + Psyr_4005 0.58 -2.1 4,769,211 - Psyr_4005 0.58 +3.1 4,769,228 + Psyr_4005 0.59 +0.1 4,769,229 - Psyr_4005 0.59 +0.1 4,769,258 + Psyr_4005 0.62 +3.1 4,769,259 - Psyr_4005 0.62 +4.1 4,769,259 - Psyr_4005 0.62 +1.1 4,769,259 - Psyr_4005 0.62 +4.6 4,769,259 - Psyr_4005 0.62 +3.8 4,769,259 - Psyr_4005 0.62 +2.7 4,769,259 - Psyr_4005 0.62 -1.6 4,769,339 + Psyr_4005 0.69 +3.3 4,769,339 + Psyr_4005 0.69 -5.0 4,769,339 + Psyr_4005 0.69 +3.7 4,769,339 + Psyr_4005 0.69 -3.8 4,769,339 + Psyr_4005 0.69 +0.0 4,769,339 + Psyr_4005 0.69 -1.4 4,769,340 - Psyr_4005 0.69 -0.3 4,769,340 - Psyr_4005 0.69 -1.7 4,769,340 - Psyr_4005 0.69 -1.6 4,769,501 + Psyr_4005 0.83 +3.1 4,769,501 + Psyr_4005 0.83 +0.5 4,769,501 + Psyr_4005 0.83 -0.8 4,769,501 + Psyr_4005 0.83 +0.9 4,769,502 - Psyr_4005 0.84 -0.1 4,769,565 - Psyr_4005 0.89 +2.1 4,769,565 - Psyr_4005 0.89 +1.7 4,769,590 + +3.6 4,769,590 + +4.6 4,769,590 + -0.3 4,769,591 - -2.6 4,769,848 + -0.2 4,769,848 + +0.8 4,769,848 + +1.9 4,769,848 + +4.0 4,769,848 + +0.8 4,769,849 - -1.2 4,769,849 - +0.1 4,769,966 + -1.4 4,769,966 + +4.5 4,769,966 + +0.3 4,769,966 + +0.1 4,769,967 - +0.1 4,769,967 - -4.1 4,769,967 - +1.7 4,769,967 - +0.1 4,769,967 - +0.1 4,769,967 - -1.8 4,769,972 + +3.6 4,769,972 + +1.7 4,769,972 + -3.1 4,769,972 + +0.7 4,769,972 + +0.7 4,769,973 - +3.9 4,769,973 - -2.3 4,769,987 + -0.5 4,769,987 + +0.1 4,769,987 + +3.6 4,769,998 + +2.1 4,769,998 + +1.1 4,769,999 - -0.9 4,769,999 - +2.1 4,770,003 + -2.3 4,770,003 + +1.6 4,770,003 + -0.1 4,770,003 + +4.2 4,770,003 + -3.0 4,770,003 + +3.3 4,770,004 - -1.1 4,770,004 - -0.9 4,770,029 + +3.9 4,770,029 + +3.9 4,770,085 + +0.8 4,770,085 + +1.0 4,770,085 + +5.9 4,770,085 + +5.0 4,770,085 + +1.4 4,770,085 + +1.4 4,770,085 + +5.7 4,770,085 + +2.3 4,770,085 + +0.7 4,770,085 + +1.3 4,770,085 + +2.1 4,770,085 + +2.1 4,770,085 + +3.3 4,770,086 - -1.4 4,770,086 - -1.5 4,770,086 - +0.1 4,770,086 - -0.7 4,770,086 - -0.6 4,770,086 - -1.3 4,770,086 - +2.4 4,770,086 - +0.1 4,770,086 - +3.4 4,770,086 - -0.2 4,770,086 - +0.1 4,770,086 - +1.7 4,770,086 - -0.7 4,770,087 + +1.0 4,770,087 + +2.9 4,770,087 + +0.4 4,770,087 + +1.9 4,770,087 + +1.3 4,770,088 - -5.5 4,770,088 - +0.1 4,770,088 - +3.1 4,770,088 - +0.1 4,770,088 - -2.4 4,770,191 + +1.7 4,770,301 + Psyr_4006 0.20 +4.3 4,770,301 + Psyr_4006 0.20 +7.9 4,770,302 - Psyr_4006 0.20 +3.4 4,770,302 - Psyr_4006 0.20 +2.2 4,770,302 - Psyr_4006 0.20 +5.7 4,770,302 - Psyr_4006 0.20 +3.3 4,770,302 - Psyr_4006 0.20 +1.8 4,770,302 - Psyr_4006 0.20 +8.1 4,770,319 + Psyr_4006 0.23 +4.7 4,770,319 + Psyr_4006 0.23 +3.3 4,770,423 + Psyr_4006 0.39 +6.7 4,770,424 - Psyr_4006 0.39 +2.4 4,770,424 - Psyr_4006 0.39 +3.3 4,770,424 - Psyr_4006 0.39 +0.1 4,770,424 - Psyr_4006 0.39 +4.3 4,770,665 + Psyr_4006 0.75 +3.5 4,770,682 + Psyr_4006 0.78 +5.5 4,770,682 + Psyr_4006 0.78 +8.6 4,770,682 + Psyr_4006 0.78 +7.3 4,770,683 - Psyr_4006 0.78 +3.3 4,770,683 - Psyr_4006 0.78 +4.8 4,770,683 - Psyr_4006 0.78 +4.1 4,770,683 - Psyr_4006 0.78 +5.6 4,770,754 + Psyr_4006 0.89 +3.7 4,770,833 + +2.2 4,770,834 - +1.1 4,770,834 - +0.5 4,770,834 - +1.7 4,770,834 - +4.9 4,770,885 + +4.8 4,770,942 - +0.1 4,771,008 + +1.0 4,771,009 - -4.6 4,771,009 - +0.1 4,771,009 - +0.1 4,771,009 - -4.6 4,771,009 - +0.1 4,771,013 - +0.1 4,771,045 + +0.1 4,771,045 + +0.1 4,771,045 + +0.1 4,771,046 - -2.9 4,771,103 + -4.8 4,771,196 - -5.8 4,771,196 - +0.1 4,771,205 + Psyr_4007 0.11 +0.1 4,771,224 + Psyr_4007 0.12 -2.1 4,771,224 + Psyr_4007 0.12 +0.1 4,771,224 + Psyr_4007 0.12 -3.2 4,771,224 + Psyr_4007 0.12 +1.7 4,771,225 - Psyr_4007 0.12 -4.7 4,771,225 - Psyr_4007 0.12 -3.4 4,771,225 - Psyr_4007 0.12 +0.1 4,771,377 + Psyr_4007 0.25 -2.7 4,771,377 + Psyr_4007 0.25 +0.1 4,771,378 - Psyr_4007 0.25 +0.1 4,771,378 - +0.1 4,771,440 + Psyr_4007 0.31 -5.0 4,771,440 + Psyr_4007 0.31 +2.4 4,771,441 - Psyr_4007 0.31 -2.2 4,771,551 + Psyr_4007 0.40 -3.2 4,771,571 + Psyr_4007 0.42 -5.4 4,771,571 + Psyr_4007 0.42 -4.5 4,771,571 + Psyr_4007 0.42 -4.3 4,771,571 + Psyr_4007 0.42 +0.1 4,771,571 + Psyr_4007 0.42 -1.9 4,771,572 - Psyr_4007 0.42 -3.1 4,771,572 - Psyr_4007 0.42 -4.3 4,771,671 + Psyr_4007 0.51 +0.1 4,771,671 + Psyr_4007 0.51 +0.1 4,771,671 + Psyr_4007 0.51 -4.9 4,771,671 + Psyr_4007 0.51 -3.5 4,771,671 + Psyr_4007 0.51 -4.4 4,771,671 + Psyr_4007 0.51 -3.8 4,771,671 + Psyr_4007 0.51 -4.5 4,771,671 + Psyr_4007 0.51 -4.2 4,771,671 + Psyr_4007 0.51 -4.1 4,771,671 + Psyr_4007 0.51 +0.1 4,771,671 + Psyr_4007 0.51 +0.1 4,771,671 + Psyr_4007 0.51 +0.1 4,771,671 + Psyr_4007 0.51 +2.1 4,771,671 + Psyr_4007 0.51 +0.1 4,771,672 - Psyr_4007 0.51 -4.2 4,771,672 - Psyr_4007 0.51 +0.1 4,771,672 - Psyr_4007 0.51 -5.5 4,771,672 - Psyr_4007 0.51 +0.1 4,771,672 - Psyr_4007 0.51 -2.4 4,771,672 - Psyr_4007 0.51 -1.3 4,771,797 + Psyr_4007 0.61 -3.9
Or see this region's nucleotide sequence