Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3956

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3955 and Psyr_3956 are separated by 284 nucleotidesPsyr_3956 and Psyr_3957 are separated by 8 nucleotidesPsyr_3957 and Psyr_3958 are separated by 33 nucleotides Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141 _3955 Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385 _3956 Psyr_3957: Psyr_3957 - anti sigma-E protein, RseA, at 4,705,394 to 4,705,984 _3957 Psyr_3958: Psyr_3958 - RNA polymerase, sigma-24 subunit, RpoE, at 4,706,018 to 4,706,599 _3958 Position (kb) 4704 4705 4706Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.749 kb on + strand, within Psyr_3955at 4703.749 kb on + strand, within Psyr_3955at 4703.776 kb on + strand, within Psyr_3955at 4703.776 kb on + strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.282 kb on - strandat 4704.282 kb on - strandat 4704.283 kb on + strandat 4704.283 kb on + strandat 4704.284 kb on - strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.428 kb on - strandat 4704.431 kb on + strandat 4704.431 kb on + strandat 4704.432 kb on - strandat 4704.468 kb on + strandat 4704.567 kb on + strand, within Psyr_3956at 4704.568 kb on - strand, within Psyr_3956at 4704.568 kb on - strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.984 kb on - strand, within Psyr_3956at 4705.146 kb on + strand, within Psyr_3956at 4705.146 kb on + strand, within Psyr_3956at 4705.146 kb on + strand, within Psyr_3956at 4705.147 kb on - strand, within Psyr_3956at 4705.147 kb on - strand, within Psyr_3956at 4705.173 kb on + strand, within Psyr_3956at 4705.174 kb on - strand, within Psyr_3956at 4705.191 kb on - strand, within Psyr_3956at 4705.191 kb on - strand, within Psyr_3956at 4705.191 kb on - strand, within Psyr_3956at 4705.203 kb on + strand, within Psyr_3956at 4705.236 kb on - strand, within Psyr_3956at 4705.249 kb on + strand, within Psyr_3956at 4705.251 kb on + strand, within Psyr_3956at 4705.252 kb on - strand, within Psyr_3956at 4705.252 kb on - strand, within Psyr_3956at 4705.259 kb on + strand, within Psyr_3956at 4705.260 kb on - strand, within Psyr_3956at 4705.267 kb on + strand, within Psyr_3956at 4705.368 kb on + strandat 4705.368 kb on + strandat 4706.050 kb on + strandat 4706.092 kb on + strand, within Psyr_3958at 4706.130 kb on + strand, within Psyr_3958at 4706.130 kb on + strand, within Psyr_3958at 4706.130 kb on + strand, within Psyr_3958at 4706.131 kb on - strand, within Psyr_3958at 4706.131 kb on - strand, within Psyr_3958at 4706.154 kb on - strand, within Psyr_3958at 4706.167 kb on + strand, within Psyr_3958at 4706.167 kb on + strand, within Psyr_3958at 4706.167 kb on + strand, within Psyr_3958at 4706.171 kb on + strand, within Psyr_3958at 4706.171 kb on + strand, within Psyr_3958at 4706.172 kb on - strand, within Psyr_3958at 4706.172 kb on - strand, within Psyr_3958at 4706.172 kb on - strand, within Psyr_3958at 4706.280 kb on + strand, within Psyr_3958at 4706.280 kb on + strand, within Psyr_3958at 4706.280 kb on + strand, within Psyr_3958at 4706.281 kb on - strand, within Psyr_3958at 4706.281 kb on - strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.344 kb on - strand, within Psyr_3958at 4706.360 kb on - strand, within Psyr_3958at 4706.373 kb on + strand, within Psyr_3958at 4706.385 kb on + strand, within Psyr_3958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,703,516 + Psyr_3955 0.57 +0.1
4,703,516 + Psyr_3955 0.57 +1.7
4,703,516 + Psyr_3955 0.57 +1.7
4,703,516 + Psyr_3955 0.57 +2.4
4,703,516 + Psyr_3955 0.57 +0.1
4,703,516 + Psyr_3955 0.57 -1.5
4,703,516 + Psyr_3955 0.57 -2.9
4,703,517 - Psyr_3955 0.57 -3.5
4,703,517 - Psyr_3955 0.57 -4.3
4,703,517 - Psyr_3955 0.57 +2.1
4,703,517 - Psyr_3955 0.57 -0.7
4,703,517 - Psyr_3955 0.57 -3.9
4,703,517 - Psyr_3955 0.57 +3.5
4,703,517 - Psyr_3955 0.57 +0.1
4,703,517 - Psyr_3955 0.57 +0.1
4,703,749 + Psyr_3955 0.73 -4.2
4,703,749 + Psyr_3955 0.73 -3.5
4,703,776 + Psyr_3955 0.75 -3.1
4,703,776 + Psyr_3955 0.75 -3.7
4,703,777 - Psyr_3955 0.75 +0.1
4,703,777 - Psyr_3955 0.75 -2.7
4,703,777 - Psyr_3955 0.75 -6.0
4,704,141 + -3.1
4,704,141 + -3.3
4,704,141 + +3.1
4,704,141 + -3.1
4,704,141 + -1.2
4,704,141 + -2.8
4,704,141 + -2.2
4,704,142 - -1.5
4,704,142 - -3.4
4,704,142 - +3.3
4,704,142 - -1.1
4,704,142 - +0.1
4,704,142 - -0.8
4,704,142 - +3.4
4,704,142 - +3.9
4,704,281 + +0.1
4,704,281 + -4.6
4,704,281 + +2.1
4,704,282 - -0.8
4,704,282 - +0.1
4,704,283 + +2.1
4,704,283 + +2.1
4,704,284 - -0.3
4,704,427 + -2.1
4,704,427 + -0.0
4,704,427 + +0.1
4,704,427 + +0.1
4,704,428 - +0.6
4,704,431 + -0.9
4,704,431 + +1.1
4,704,432 - +2.4
4,704,468 + -0.7
4,704,567 + Psyr_3956 0.15 +2.9
4,704,568 - Psyr_3956 0.15 -0.5
4,704,568 - Psyr_3956 0.15 +1.7
4,704,646 + Psyr_3956 0.23 -2.5
4,704,646 + Psyr_3956 0.23 +0.1
4,704,646 + Psyr_3956 0.23 +3.9
4,704,646 + Psyr_3956 0.23 +0.3
4,704,646 + Psyr_3956 0.23 -3.9
4,704,646 + Psyr_3956 0.23 -4.8
4,704,646 + Psyr_3956 0.23 +1.7
4,704,646 + Psyr_3956 0.23 -0.3
4,704,647 - Psyr_3956 0.23 -0.9
4,704,647 - Psyr_3956 0.23 -1.1
4,704,647 - Psyr_3956 0.23 +2.7
4,704,647 - Psyr_3956 0.23 -3.1
4,704,647 - Psyr_3956 0.23 +1.7
4,704,647 - Psyr_3956 0.23 +0.7
4,704,983 + Psyr_3956 0.58 -5.8
4,704,983 + Psyr_3956 0.58 -2.5
4,704,984 - Psyr_3956 0.58 -0.2
4,705,146 + Psyr_3956 0.75 -0.7
4,705,146 + Psyr_3956 0.75 -1.7
4,705,146 + Psyr_3956 0.75 +1.7
4,705,147 - Psyr_3956 0.75 -0.3
4,705,147 - Psyr_3956 0.75 -0.7
4,705,173 + Psyr_3956 0.78 +0.1
4,705,174 - Psyr_3956 0.78 -3.0
4,705,191 - Psyr_3956 0.80 +0.1
4,705,191 - Psyr_3956 0.80 -4.9
4,705,191 - Psyr_3956 0.80 -2.5
4,705,203 + Psyr_3956 0.81 +0.1
4,705,236 - Psyr_3956 0.84 -1.9
4,705,249 + Psyr_3956 0.86 -5.7
4,705,251 + Psyr_3956 0.86 -4.3
4,705,252 - Psyr_3956 0.86 -2.4
4,705,252 - Psyr_3956 0.86 -0.4
4,705,259 + Psyr_3956 0.87 -1.7
4,705,260 - Psyr_3956 0.87 -2.3
4,705,267 + Psyr_3956 0.88 -2.0
4,705,368 + -3.0
4,705,368 + -0.3
4,706,050 + -4.5
4,706,092 + Psyr_3958 0.13 +0.1
4,706,130 + Psyr_3958 0.19 -3.9
4,706,130 + Psyr_3958 0.19 -2.9
4,706,130 + Psyr_3958 0.19 -3.7
4,706,131 - Psyr_3958 0.19 +2.7
4,706,131 - Psyr_3958 0.19 +0.1
4,706,154 - Psyr_3958 0.23 +2.1
4,706,167 + Psyr_3958 0.26 -2.2
4,706,167 + Psyr_3958 0.26 +0.1
4,706,167 + Psyr_3958 0.26 +0.1
4,706,171 + Psyr_3958 0.26 -4.6
4,706,171 + Psyr_3958 0.26 -0.5
4,706,172 - Psyr_3958 0.26 -0.4
4,706,172 - Psyr_3958 0.26 -0.6
4,706,172 - Psyr_3958 0.26 -1.3
4,706,280 + Psyr_3958 0.45 -1.7
4,706,280 + Psyr_3958 0.45 -2.1
4,706,280 + Psyr_3958 0.45 +1.1
4,706,281 - Psyr_3958 0.45 -0.9
4,706,281 - Psyr_3958 0.45 -1.8
4,706,303 + Psyr_3958 0.49 -0.2
4,706,303 + Psyr_3958 0.49 -0.2
4,706,303 + Psyr_3958 0.49 -4.2
4,706,303 + Psyr_3958 0.49 -0.6
4,706,303 + Psyr_3958 0.49 +3.4
4,706,303 + Psyr_3958 0.49 +0.1
4,706,303 + Psyr_3958 0.49 -0.4
4,706,303 + Psyr_3958 0.49 +0.1
4,706,303 + Psyr_3958 0.49 -1.8
4,706,304 - Psyr_3958 0.49 -1.5
4,706,304 - Psyr_3958 0.49 -1.3
4,706,304 - Psyr_3958 0.49 -1.1
4,706,304 - Psyr_3958 0.49 +1.1
4,706,304 - Psyr_3958 0.49 +1.2
4,706,304 - Psyr_3958 0.49 -0.4
4,706,304 - Psyr_3958 0.49 -0.1
4,706,304 - Psyr_3958 0.49 +0.1
4,706,304 - Psyr_3958 0.49 +2.9
4,706,343 + Psyr_3958 0.56 -3.0
4,706,343 + Psyr_3958 0.56 +0.1
4,706,343 + Psyr_3958 0.56 -2.1
4,706,343 + Psyr_3958 0.56 +0.1
4,706,344 - Psyr_3958 0.56 -0.8
4,706,360 - Psyr_3958 0.59 +1.7
4,706,373 + Psyr_3958 0.61 +0.1
4,706,385 + Psyr_3958 0.63 -0.4

Or see this region's nucleotide sequence