Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3954 and Psyr_3955 are separated by 171 nucleotides Psyr_3955 and Psyr_3956 are separated by 284 nucleotides
Psyr_3954: Psyr_3954 - GTP-binding protein LepA, at 4,700,728 to 4,702,524
_3954
Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141
_3955
Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385
_3956
Position (kb) 4702
4703
4704
4705 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 4701.909 kb on - strand, within Psyr_3954 at 4702.167 kb on - strand, within Psyr_3954 at 4702.260 kb on - strand, within Psyr_3954 at 4702.329 kb on - strand, within Psyr_3954 at 4702.332 kb on - strand, within Psyr_3954 at 4702.584 kb on - strand at 4702.593 kb on - strand at 4702.593 kb on - strand at 4702.612 kb on + strand at 4702.613 kb on - strand at 4702.710 kb on + strand at 4702.710 kb on + strand at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.749 kb on + strand, within Psyr_3955 at 4703.749 kb on + strand, within Psyr_3955 at 4703.776 kb on + strand, within Psyr_3955 at 4703.776 kb on + strand, within Psyr_3955 at 4703.777 kb on - strand, within Psyr_3955 at 4703.777 kb on - strand, within Psyr_3955 at 4703.777 kb on - strand, within Psyr_3955 at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.141 kb on + strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.142 kb on - strand at 4704.281 kb on + strand at 4704.281 kb on + strand at 4704.281 kb on + strand at 4704.282 kb on - strand at 4704.282 kb on - strand at 4704.283 kb on + strand at 4704.283 kb on + strand at 4704.284 kb on - strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.428 kb on - strand at 4704.431 kb on + strand at 4704.431 kb on + strand at 4704.432 kb on - strand at 4704.468 kb on + strand at 4704.567 kb on + strand, within Psyr_3956 at 4704.568 kb on - strand, within Psyr_3956 at 4704.568 kb on - strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.646 kb on + strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.647 kb on - strand, within Psyr_3956 at 4704.983 kb on + strand, within Psyr_3956 at 4704.983 kb on + strand, within Psyr_3956 at 4704.984 kb on - strand, within Psyr_3956
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,701,909 - Psyr_3954 0.66 +0.1 4,702,167 - Psyr_3954 0.80 -0.9 4,702,260 - Psyr_3954 0.85 -1.6 4,702,329 - Psyr_3954 0.89 -4.9 4,702,332 - Psyr_3954 0.89 -3.5 4,702,584 - -1.8 4,702,593 - +3.3 4,702,593 - -2.5 4,702,612 + -3.6 4,702,613 - +0.1 4,702,710 + +1.2 4,702,710 + +1.7 4,703,516 + Psyr_3955 0.57 +0.1 4,703,516 + Psyr_3955 0.57 +1.7 4,703,516 + Psyr_3955 0.57 +1.7 4,703,516 + Psyr_3955 0.57 +2.4 4,703,516 + Psyr_3955 0.57 +0.1 4,703,516 + Psyr_3955 0.57 -1.5 4,703,516 + Psyr_3955 0.57 -2.9 4,703,517 - Psyr_3955 0.57 -3.5 4,703,517 - Psyr_3955 0.57 -4.3 4,703,517 - Psyr_3955 0.57 +2.1 4,703,517 - Psyr_3955 0.57 -0.7 4,703,517 - Psyr_3955 0.57 -3.9 4,703,517 - Psyr_3955 0.57 +3.5 4,703,517 - Psyr_3955 0.57 +0.1 4,703,517 - Psyr_3955 0.57 +0.1 4,703,749 + Psyr_3955 0.73 -4.2 4,703,749 + Psyr_3955 0.73 -3.5 4,703,776 + Psyr_3955 0.75 -3.1 4,703,776 + Psyr_3955 0.75 -3.7 4,703,777 - Psyr_3955 0.75 +0.1 4,703,777 - Psyr_3955 0.75 -2.7 4,703,777 - Psyr_3955 0.75 -6.0 4,704,141 + -3.1 4,704,141 + -3.3 4,704,141 + +3.1 4,704,141 + -3.1 4,704,141 + -1.2 4,704,141 + -2.8 4,704,141 + -2.2 4,704,142 - -1.5 4,704,142 - -3.4 4,704,142 - +3.3 4,704,142 - -1.1 4,704,142 - +0.1 4,704,142 - -0.8 4,704,142 - +3.4 4,704,142 - +3.9 4,704,281 + +0.1 4,704,281 + -4.6 4,704,281 + +2.1 4,704,282 - -0.8 4,704,282 - +0.1 4,704,283 + +2.1 4,704,283 + +2.1 4,704,284 - -0.3 4,704,427 + -2.1 4,704,427 + -0.0 4,704,427 + +0.1 4,704,427 + +0.1 4,704,428 - +0.6 4,704,431 + -0.9 4,704,431 + +1.1 4,704,432 - +2.4 4,704,468 + -0.7 4,704,567 + Psyr_3956 0.15 +2.9 4,704,568 - Psyr_3956 0.15 -0.5 4,704,568 - Psyr_3956 0.15 +1.7 4,704,646 + Psyr_3956 0.23 -2.5 4,704,646 + Psyr_3956 0.23 +0.1 4,704,646 + Psyr_3956 0.23 +3.9 4,704,646 + Psyr_3956 0.23 +0.3 4,704,646 + Psyr_3956 0.23 -3.9 4,704,646 + Psyr_3956 0.23 -4.8 4,704,646 + Psyr_3956 0.23 +1.7 4,704,646 + Psyr_3956 0.23 -0.3 4,704,647 - Psyr_3956 0.23 -0.9 4,704,647 - Psyr_3956 0.23 -1.1 4,704,647 - Psyr_3956 0.23 +2.7 4,704,647 - Psyr_3956 0.23 -3.1 4,704,647 - Psyr_3956 0.23 +1.7 4,704,647 - Psyr_3956 0.23 +0.7 4,704,983 + Psyr_3956 0.58 -5.8 4,704,983 + Psyr_3956 0.58 -2.5 4,704,984 - Psyr_3956 0.58 -0.2
Or see this region's nucleotide sequence