Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3878 and Psyr_3879 are separated by 6 nucleotides Psyr_3879 and Psyr_3880 are separated by 293 nucleotides Psyr_3880 and Psyr_3881 overlap by 4 nucleotides Psyr_3881 and Psyr_3882 are separated by 65 nucleotides
Psyr_3878: Psyr_3878 - amino acid ABC transporter ATP-binding protein, PAAT family, at 4,618,847 to 4,619,611
_3878
Psyr_3879: Psyr_3879 - hypothetical protein, at 4,619,618 to 4,620,172
_3879
Psyr_3880: Psyr_3880 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 4,620,466 to 4,622,958
_3880
Psyr_3881: Psyr_3881 - conserved hypothetical protein, at 4,622,955 to 4,623,611
_3881
Psyr_3882: Psyr_3882 - conserved hypothetical protein, at 4,623,677 to 4,623,898
_3882
Position (kb) 4620
4621
4622
4623 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4619.505 kb on + strand, within Psyr_3878 at 4619.506 kb on - strand, within Psyr_3878 at 4619.609 kb on + strand at 4619.610 kb on - strand at 4619.610 kb on - strand at 4619.626 kb on + strand at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4620.120 kb on + strand at 4620.397 kb on + strand at 4620.397 kb on + strand at 4620.398 kb on - strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.406 kb on - strand at 4620.406 kb on - strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.411 kb on - strand at 4620.413 kb on + strand at 4620.439 kb on - strand at 4620.607 kb on + strand at 4620.607 kb on + strand at 4620.651 kb on + strand at 4621.071 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.292 kb on + strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.293 kb on - strand, within Psyr_3880 at 4621.424 kb on + strand, within Psyr_3880 at 4621.424 kb on + strand, within Psyr_3880 at 4621.425 kb on - strand, within Psyr_3880 at 4621.742 kb on + strand, within Psyr_3880 at 4621.743 kb on - strand, within Psyr_3880 at 4621.743 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.760 kb on - strand, within Psyr_3880 at 4621.960 kb on + strand, within Psyr_3880 at 4621.961 kb on - strand, within Psyr_3880 at 4622.079 kb on - strand, within Psyr_3880 at 4622.096 kb on - strand, within Psyr_3880 at 4622.096 kb on - strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.339 kb on + strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.340 kb on - strand, within Psyr_3880 at 4622.599 kb on - strand, within Psyr_3880 at 4622.695 kb on + strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.696 kb on - strand, within Psyr_3880 at 4622.817 kb on + strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.820 kb on - strand at 4622.964 kb on + strand at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.021 kb on + strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.022 kb on - strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.412 kb on + strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.413 kb on - strand, within Psyr_3881 at 4623.439 kb on - strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.486 kb on + strand, within Psyr_3881 at 4623.487 kb on - strand, within Psyr_3881 at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.573 kb on + strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.574 kb on - strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.629 kb on + strand at 4623.630 kb on - strand at 4623.715 kb on + strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.716 kb on - strand, within Psyr_3882 at 4623.889 kb on + strand at 4623.890 kb on - strand at 4623.890 kb on - strand at 4623.929 kb on + strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.930 kb on - strand at 4623.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,619,505 + Psyr_3878 0.86 +3.1 4,619,506 - Psyr_3878 0.86 -1.6 4,619,609 + -0.8 4,619,610 - +0.1 4,619,610 - -1.8 4,619,626 + -1.1 4,619,685 + Psyr_3879 0.12 -1.9 4,619,685 + Psyr_3879 0.12 +1.7 4,619,685 + Psyr_3879 0.12 +0.1 4,619,685 + Psyr_3879 0.12 -0.7 4,619,685 + Psyr_3879 0.12 -1.4 4,619,685 + Psyr_3879 0.12 +2.1 4,619,686 - Psyr_3879 0.12 -1.2 4,619,686 - Psyr_3879 0.12 +4.0 4,620,120 + +2.1 4,620,397 + -3.5 4,620,397 + +1.1 4,620,398 - -1.4 4,620,405 + -3.6 4,620,405 + -0.6 4,620,405 + +0.1 4,620,406 - +2.1 4,620,406 - -0.7 4,620,410 + +3.1 4,620,410 + +4.0 4,620,410 + -1.9 4,620,411 - +4.7 4,620,413 + +2.1 4,620,439 - -1.9 4,620,607 + -1.7 4,620,607 + -2.2 4,620,651 + +3.4 4,621,071 + Psyr_3880 0.24 -3.7 4,621,292 + Psyr_3880 0.33 +1.4 4,621,292 + Psyr_3880 0.33 +1.1 4,621,292 + Psyr_3880 0.33 +0.1 4,621,292 + Psyr_3880 0.33 -1.4 4,621,292 + Psyr_3880 0.33 +0.4 4,621,293 - Psyr_3880 0.33 +0.1 4,621,293 - Psyr_3880 0.33 +2.1 4,621,293 - Psyr_3880 0.33 +1.7 4,621,293 - Psyr_3880 0.33 +3.4 4,621,293 - Psyr_3880 0.33 -1.7 4,621,293 - Psyr_3880 0.33 -3.0 4,621,424 + Psyr_3880 0.38 +1.6 4,621,424 + Psyr_3880 0.38 +0.2 4,621,425 - Psyr_3880 0.38 +3.1 4,621,742 + Psyr_3880 0.51 +0.3 4,621,743 - Psyr_3880 0.51 -2.4 4,621,743 - Psyr_3880 0.51 +0.7 4,621,760 - Psyr_3880 0.52 +3.8 4,621,760 - Psyr_3880 0.52 +0.6 4,621,760 - Psyr_3880 0.52 +3.5 4,621,960 + Psyr_3880 0.60 +3.4 4,621,961 - Psyr_3880 0.60 +5.4 4,622,079 - Psyr_3880 0.65 +0.6 4,622,096 - Psyr_3880 0.65 +2.1 4,622,096 - Psyr_3880 0.65 -4.0 4,622,339 + Psyr_3880 0.75 +1.7 4,622,339 + Psyr_3880 0.75 -2.9 4,622,339 + Psyr_3880 0.75 +3.8 4,622,339 + Psyr_3880 0.75 -4.4 4,622,339 + Psyr_3880 0.75 -0.1 4,622,339 + Psyr_3880 0.75 +1.0 4,622,339 + Psyr_3880 0.75 -1.3 4,622,339 + Psyr_3880 0.75 -0.2 4,622,339 + Psyr_3880 0.75 -2.8 4,622,340 - Psyr_3880 0.75 +3.5 4,622,340 - Psyr_3880 0.75 +2.9 4,622,340 - Psyr_3880 0.75 +2.9 4,622,340 - Psyr_3880 0.75 +0.4 4,622,340 - Psyr_3880 0.75 -0.3 4,622,599 - Psyr_3880 0.86 +2.9 4,622,695 + Psyr_3880 0.89 -4.1 4,622,696 - Psyr_3880 0.89 -1.6 4,622,696 - Psyr_3880 0.89 +0.1 4,622,817 + -1.0 4,622,820 - +4.1 4,622,820 - +0.1 4,622,820 - +0.1 4,622,964 + +1.1 4,623,021 + Psyr_3881 0.10 -2.9 4,623,021 + Psyr_3881 0.10 -0.5 4,623,021 + Psyr_3881 0.10 -1.4 4,623,021 + Psyr_3881 0.10 -1.2 4,623,021 + Psyr_3881 0.10 -0.9 4,623,021 + Psyr_3881 0.10 -4.2 4,623,021 + Psyr_3881 0.10 +3.8 4,623,021 + Psyr_3881 0.10 +3.3 4,623,021 + Psyr_3881 0.10 -0.8 4,623,021 + Psyr_3881 0.10 -2.2 4,623,021 + Psyr_3881 0.10 -2.0 4,623,022 - Psyr_3881 0.10 -0.7 4,623,022 - Psyr_3881 0.10 -4.1 4,623,022 - Psyr_3881 0.10 +0.1 4,623,022 - Psyr_3881 0.10 +0.1 4,623,022 - Psyr_3881 0.10 +3.8 4,623,022 - Psyr_3881 0.10 +2.4 4,623,022 - Psyr_3881 0.10 -1.1 4,623,022 - Psyr_3881 0.10 +1.7 4,623,022 - Psyr_3881 0.10 +0.1 4,623,412 + Psyr_3881 0.70 -0.7 4,623,412 + Psyr_3881 0.70 +3.3 4,623,412 + Psyr_3881 0.70 +0.1 4,623,413 - Psyr_3881 0.70 +3.5 4,623,413 - Psyr_3881 0.70 +3.1 4,623,413 - Psyr_3881 0.70 +4.0 4,623,413 - Psyr_3881 0.70 -1.2 4,623,439 - Psyr_3881 0.74 +3.3 4,623,486 + Psyr_3881 0.81 -1.4 4,623,486 + Psyr_3881 0.81 -0.8 4,623,486 + Psyr_3881 0.81 -0.1 4,623,487 - Psyr_3881 0.81 -0.7 4,623,573 + -1.6 4,623,573 + -0.2 4,623,573 + -2.8 4,623,573 + +0.1 4,623,573 + -0.2 4,623,573 + +3.4 4,623,573 + -1.3 4,623,573 + +4.5 4,623,573 + +3.1 4,623,573 + +1.7 4,623,573 + +2.1 4,623,574 - -1.6 4,623,574 - +3.9 4,623,574 - +3.1 4,623,574 - +2.4 4,623,574 - +0.1 4,623,574 - -0.2 4,623,574 - +4.3 4,623,574 - +5.3 4,623,574 - -0.5 4,623,574 - -0.6 4,623,574 - +0.4 4,623,574 - +0.4 4,623,574 - -0.7 4,623,574 - -0.2 4,623,574 - -0.2 4,623,629 + -0.4 4,623,629 + -0.9 4,623,629 + +4.0 4,623,629 + +1.3 4,623,629 + -2.5 4,623,630 - -0.0 4,623,715 + Psyr_3882 0.17 +0.1 4,623,716 - Psyr_3882 0.18 +0.1 4,623,716 - Psyr_3882 0.18 -1.1 4,623,889 + -2.2 4,623,890 - -4.0 4,623,890 - -1.0 4,623,929 + -3.4 4,623,930 - +0.1 4,623,930 - -1.4 4,623,930 - +0.5 4,623,938 - -0.1
Or see this region's nucleotide sequence