Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3823 and Psyr_3824 are separated by 186 nucleotides Psyr_3824 and Psyr_3825 are separated by 67 nucleotides
Psyr_3823: Psyr_3823 - Hemolysin-type calcium-binding region:Putative Ig, at 4,547,783 to 4,552,615
_3823
Psyr_3824: Psyr_3824 - conserved hypothetical protein, at 4,552,802 to 4,553,116
_3824
Psyr_3825: Psyr_3825 - transcriptional regulator, LysR family, at 4,553,184 to 4,554,107
_3825
Position (kb) 4552
4553
4554 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4551.821 kb on + strand, within Psyr_3823 at 4551.821 kb on + strand, within Psyr_3823 at 4551.821 kb on + strand, within Psyr_3823 at 4551.821 kb on + strand, within Psyr_3823 at 4551.822 kb on - strand, within Psyr_3823 at 4551.822 kb on - strand, within Psyr_3823 at 4551.822 kb on - strand, within Psyr_3823 at 4551.824 kb on + strand, within Psyr_3823 at 4551.824 kb on + strand, within Psyr_3823 at 4551.824 kb on + strand, within Psyr_3823 at 4551.824 kb on + strand, within Psyr_3823 at 4551.824 kb on + strand, within Psyr_3823 at 4551.825 kb on - strand, within Psyr_3823 at 4551.889 kb on + strand, within Psyr_3823 at 4551.896 kb on + strand, within Psyr_3823 at 4551.896 kb on + strand, within Psyr_3823 at 4551.896 kb on + strand, within Psyr_3823 at 4551.897 kb on - strand, within Psyr_3823 at 4551.897 kb on - strand, within Psyr_3823 at 4551.897 kb on - strand, within Psyr_3823 at 4551.914 kb on + strand, within Psyr_3823 at 4551.915 kb on - strand, within Psyr_3823 at 4551.915 kb on - strand, within Psyr_3823 at 4552.001 kb on + strand, within Psyr_3823 at 4552.058 kb on + strand, within Psyr_3823 at 4552.059 kb on - strand, within Psyr_3823 at 4552.319 kb on + strand at 4552.319 kb on + strand at 4552.319 kb on + strand at 4552.319 kb on + strand at 4552.319 kb on + strand at 4552.320 kb on - strand at 4552.320 kb on - strand at 4552.320 kb on - strand at 4552.524 kb on + strand at 4552.524 kb on + strand at 4552.524 kb on + strand at 4552.525 kb on - strand at 4552.525 kb on - strand at 4552.638 kb on + strand at 4552.693 kb on + strand at 4552.693 kb on + strand at 4552.694 kb on - strand at 4552.786 kb on + strand at 4552.787 kb on - strand at 4552.787 kb on - strand at 4552.798 kb on - strand at 4552.839 kb on - strand, within Psyr_3824 at 4552.955 kb on + strand, within Psyr_3824 at 4552.956 kb on - strand, within Psyr_3824 at 4552.956 kb on - strand, within Psyr_3824 at 4552.956 kb on - strand, within Psyr_3824 at 4552.965 kb on + strand, within Psyr_3824 at 4552.966 kb on - strand, within Psyr_3824 at 4552.998 kb on + strand, within Psyr_3824 at 4553.016 kb on + strand, within Psyr_3824 at 4553.016 kb on + strand, within Psyr_3824 at 4553.016 kb on + strand, within Psyr_3824 at 4553.017 kb on - strand, within Psyr_3824 at 4553.017 kb on - strand, within Psyr_3824 at 4553.062 kb on - strand, within Psyr_3824 at 4553.147 kb on + strand at 4553.148 kb on - strand at 4553.148 kb on - strand at 4553.167 kb on + strand at 4553.168 kb on - strand at 4553.168 kb on - strand at 4553.168 kb on - strand at 4553.178 kb on + strand at 4553.178 kb on + strand at 4553.178 kb on + strand at 4553.179 kb on - strand at 4553.179 kb on - strand at 4553.179 kb on - strand at 4553.179 kb on - strand at 4553.179 kb on - strand at 4553.298 kb on + strand, within Psyr_3825 at 4553.298 kb on + strand, within Psyr_3825 at 4553.298 kb on + strand, within Psyr_3825 at 4553.299 kb on - strand, within Psyr_3825 at 4553.299 kb on - strand, within Psyr_3825 at 4553.386 kb on + strand, within Psyr_3825 at 4553.500 kb on - strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,551,821 + Psyr_3823 0.84 -3.5 4,551,821 + Psyr_3823 0.84 +2.1 4,551,821 + Psyr_3823 0.84 +2.9 4,551,821 + Psyr_3823 0.84 -1.8 4,551,822 - Psyr_3823 0.84 +1.7 4,551,822 - Psyr_3823 0.84 +2.1 4,551,822 - Psyr_3823 0.84 -0.2 4,551,824 + Psyr_3823 0.84 +3.7 4,551,824 + Psyr_3823 0.84 +3.4 4,551,824 + Psyr_3823 0.84 -2.5 4,551,824 + Psyr_3823 0.84 +4.1 4,551,824 + Psyr_3823 0.84 +2.4 4,551,825 - Psyr_3823 0.84 -0.4 4,551,889 + Psyr_3823 0.85 -0.2 4,551,896 + Psyr_3823 0.85 +0.5 4,551,896 + Psyr_3823 0.85 +0.0 4,551,896 + Psyr_3823 0.85 +4.8 4,551,897 - Psyr_3823 0.85 +3.3 4,551,897 - Psyr_3823 0.85 +0.1 4,551,897 - Psyr_3823 0.85 +2.1 4,551,914 + Psyr_3823 0.85 +0.1 4,551,915 - Psyr_3823 0.85 -1.5 4,551,915 - Psyr_3823 0.85 +3.1 4,552,001 + Psyr_3823 0.87 -2.1 4,552,058 + Psyr_3823 0.88 +3.6 4,552,059 - Psyr_3823 0.88 -0.2 4,552,319 + -0.8 4,552,319 + +1.1 4,552,319 + -4.9 4,552,319 + +2.7 4,552,319 + +1.7 4,552,320 - -2.5 4,552,320 - -0.6 4,552,320 - +0.1 4,552,524 + +0.4 4,552,524 + -0.5 4,552,524 + +3.4 4,552,525 - -3.5 4,552,525 - +1.1 4,552,638 + +0.1 4,552,693 + +1.1 4,552,693 + +2.4 4,552,694 - -0.5 4,552,786 + -2.9 4,552,787 - +1.2 4,552,787 - -0.6 4,552,798 - +0.6 4,552,839 - Psyr_3824 0.12 +1.7 4,552,955 + Psyr_3824 0.49 +2.9 4,552,956 - Psyr_3824 0.49 -1.1 4,552,956 - Psyr_3824 0.49 +4.5 4,552,956 - Psyr_3824 0.49 +1.8 4,552,965 + Psyr_3824 0.52 +2.4 4,552,966 - Psyr_3824 0.52 +0.2 4,552,998 + Psyr_3824 0.62 -1.2 4,553,016 + Psyr_3824 0.68 -2.2 4,553,016 + Psyr_3824 0.68 -1.6 4,553,016 + Psyr_3824 0.68 +2.7 4,553,017 - Psyr_3824 0.68 +0.5 4,553,017 - Psyr_3824 0.68 -1.5 4,553,062 - Psyr_3824 0.83 +2.4 4,553,147 + -2.6 4,553,148 - +1.7 4,553,148 - +4.0 4,553,167 + +2.9 4,553,168 - -0.0 4,553,168 - -1.6 4,553,168 - +2.9 4,553,178 + +3.6 4,553,178 + +1.1 4,553,178 + -1.4 4,553,179 - +0.9 4,553,179 - -3.2 4,553,179 - -1.0 4,553,179 - -1.9 4,553,179 - +2.1 4,553,298 + Psyr_3825 0.12 +3.4 4,553,298 + Psyr_3825 0.12 +2.4 4,553,298 + Psyr_3825 0.12 -1.1 4,553,299 - Psyr_3825 0.12 -1.1 4,553,299 - Psyr_3825 0.12 -4.4 4,553,386 + Psyr_3825 0.22 -0.9 4,553,500 - Psyr_3825 0.34 +1.1 4,553,988 + Psyr_3825 0.87 -3.1 4,553,988 + Psyr_3825 0.87 +1.7 4,553,988 + Psyr_3825 0.87 +0.1 4,553,988 + Psyr_3825 0.87 -2.5 4,553,988 + Psyr_3825 0.87 -1.5 4,553,989 - Psyr_3825 0.87 +4.2 4,553,989 - Psyr_3825 0.87 +1.7 4,553,989 - Psyr_3825 0.87 +3.4 4,553,989 - Psyr_3825 0.87 +3.6 4,553,989 - Psyr_3825 0.87 -2.1
Or see this region's nucleotide sequence