Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3796

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3794 and Psyr_3795 are separated by 118 nucleotidesPsyr_3795 and Psyr_3796 are separated by 19 nucleotidesPsyr_3796 and Psyr_3797 are separated by 88 nucleotides Psyr_3794: Psyr_3794 - surface antigen (D15):Surface antigen variable number, at 4,510,450 to 4,512,822 _3794 Psyr_3795: Psyr_3795 - hypothetical protein, at 4,512,941 to 4,513,354 _3795 Psyr_3796: Psyr_3796 - transcriptional regulator, LysR family, at 4,513,374 to 4,514,273 _3796 Psyr_3797: Psyr_3797 - NAD(P)H dehydrogenase (quinone), at 4,514,362 to 4,515,162 _3797 Position (kb) 4513 4514 4515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4512.377 kb on - strand, within Psyr_3794at 4512.385 kb on + strand, within Psyr_3794at 4512.385 kb on + strand, within Psyr_3794at 4512.386 kb on - strand, within Psyr_3794at 4512.386 kb on - strand, within Psyr_3794at 4512.466 kb on + strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.626 kb on - strandat 4512.834 kb on + strandat 4512.834 kb on + strandat 4512.866 kb on + strandat 4512.866 kb on + strandat 4512.866 kb on + strandat 4512.867 kb on - strandat 4512.867 kb on - strandat 4512.867 kb on - strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.917 kb on - strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4513.185 kb on + strand, within Psyr_3795at 4513.186 kb on - strand, within Psyr_3795at 4513.186 kb on - strand, within Psyr_3795at 4513.320 kb on + strandat 4513.321 kb on - strandat 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4514.253 kb on - strandat 4514.253 kb on - strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.573 kb on + strand, within Psyr_3797at 4514.574 kb on - strand, within Psyr_3797at 4514.574 kb on - strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.699 kb on + strand, within Psyr_3797at 4514.700 kb on - strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.711 kb on - strand, within Psyr_3797at 4514.909 kb on - strand, within Psyr_3797at 4515.064 kb on + strand, within Psyr_3797at 4515.161 kb on - strandat 4515.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,512,377 - Psyr_3794 0.81 +3.5
4,512,385 + Psyr_3794 0.82 -1.7
4,512,385 + Psyr_3794 0.82 +1.1
4,512,386 - Psyr_3794 0.82 +2.1
4,512,386 - Psyr_3794 0.82 +0.4
4,512,466 + Psyr_3794 0.85 +2.4
4,512,467 - Psyr_3794 0.85 +4.2
4,512,467 - Psyr_3794 0.85 +2.4
4,512,467 - Psyr_3794 0.85 +2.1
4,512,487 + Psyr_3794 0.86 -3.1
4,512,487 + Psyr_3794 0.86 -3.5
4,512,487 + Psyr_3794 0.86 +0.1
4,512,487 + Psyr_3794 0.86 +3.1
4,512,487 + Psyr_3794 0.86 +3.4
4,512,487 + Psyr_3794 0.86 +1.1
4,512,488 - Psyr_3794 0.86 -0.1
4,512,488 - Psyr_3794 0.86 -3.2
4,512,488 - Psyr_3794 0.86 +0.6
4,512,488 - Psyr_3794 0.86 +2.4
4,512,488 - Psyr_3794 0.86 +2.1
4,512,488 - Psyr_3794 0.86 -1.4
4,512,488 - Psyr_3794 0.86 +4.0
4,512,488 - Psyr_3794 0.86 +0.2
4,512,488 - Psyr_3794 0.86 +1.7
4,512,488 - Psyr_3794 0.86 +3.0
4,512,488 - Psyr_3794 0.86 +2.9
4,512,488 - Psyr_3794 0.86 -2.4
4,512,550 + Psyr_3794 0.88 +0.1
4,512,550 + Psyr_3794 0.88 +1.1
4,512,550 + Psyr_3794 0.88 +1.7
4,512,550 + Psyr_3794 0.88 +0.5
4,512,550 + Psyr_3794 0.88 -0.5
4,512,550 + Psyr_3794 0.88 -0.3
4,512,551 - Psyr_3794 0.89 -2.0
4,512,551 - Psyr_3794 0.89 -2.1
4,512,551 - Psyr_3794 0.89 -0.7
4,512,551 - Psyr_3794 0.89 -0.7
4,512,551 - Psyr_3794 0.89 -2.5
4,512,551 - Psyr_3794 0.89 +3.8
4,512,551 - Psyr_3794 0.89 -2.2
4,512,551 - Psyr_3794 0.89 +4.3
4,512,626 - -0.3
4,512,834 + -1.8
4,512,834 + -0.1
4,512,866 + -1.8
4,512,866 + -1.0
4,512,866 + -1.0
4,512,867 - -0.5
4,512,867 - +0.1
4,512,867 - -2.3
4,512,887 + -0.3
4,512,887 + +1.1
4,512,887 + -2.9
4,512,887 + -1.2
4,512,887 + +1.1
4,512,888 - +0.1
4,512,888 - +3.4
4,512,888 - +2.9
4,512,888 - -1.5
4,512,888 - +0.1
4,512,888 - +2.4
4,512,917 - -0.2
4,512,938 + -5.0
4,512,938 + -0.1
4,512,938 + +3.4
4,512,938 + -4.2
4,512,938 + +1.1
4,512,938 + +1.7
4,512,939 - -2.2
4,512,939 - -0.3
4,512,939 - -0.3
4,512,939 - +3.3
4,512,939 - +0.1
4,512,939 - +0.1
4,512,939 - +2.1
4,513,185 + Psyr_3795 0.59 -1.4
4,513,186 - Psyr_3795 0.59 +2.8
4,513,186 - Psyr_3795 0.59 +1.1
4,513,320 + +1.1
4,513,321 - -2.1
4,513,756 + Psyr_3796 0.42 +3.4
4,513,756 + Psyr_3796 0.42 -0.5
4,513,756 + Psyr_3796 0.42 +0.7
4,514,253 - +4.3
4,514,253 - +3.2
4,514,369 + +2.1
4,514,369 + -2.6
4,514,369 + +0.1
4,514,369 + +0.9
4,514,369 + +1.1
4,514,369 + +0.1
4,514,370 - -0.3
4,514,370 - +1.7
4,514,370 - +0.5
4,514,370 - +4.1
4,514,370 - -0.6
4,514,370 - -1.2
4,514,370 - +1.7
4,514,370 - -1.4
4,514,373 + -2.4
4,514,373 + -3.2
4,514,373 + -3.4
4,514,373 + -3.0
4,514,373 + -2.4
4,514,373 + +0.1
4,514,373 + -1.6
4,514,374 - -1.0
4,514,374 - +3.4
4,514,374 - +0.2
4,514,374 - +0.1
4,514,374 - +3.3
4,514,374 - -0.6
4,514,573 + Psyr_3797 0.26 -2.1
4,514,574 - Psyr_3797 0.26 +3.1
4,514,574 - Psyr_3797 0.26 -2.3
4,514,645 + Psyr_3797 0.35 -3.4
4,514,645 + Psyr_3797 0.35 +1.7
4,514,645 + Psyr_3797 0.35 +0.1
4,514,645 + Psyr_3797 0.35 +3.8
4,514,645 + Psyr_3797 0.35 -2.6
4,514,645 + Psyr_3797 0.35 +1.7
4,514,646 - Psyr_3797 0.35 +1.1
4,514,646 - Psyr_3797 0.35 -1.0
4,514,646 - Psyr_3797 0.35 -1.6
4,514,699 + Psyr_3797 0.42 +3.3
4,514,700 - Psyr_3797 0.42 +3.8
4,514,710 + Psyr_3797 0.43 -0.6
4,514,710 + Psyr_3797 0.43 +2.2
4,514,710 + Psyr_3797 0.43 +3.8
4,514,710 + Psyr_3797 0.43 -1.9
4,514,710 + Psyr_3797 0.43 -1.9
4,514,710 + Psyr_3797 0.43 -0.6
4,514,711 - Psyr_3797 0.44 +3.4
4,514,909 - Psyr_3797 0.68 -4.8
4,515,064 + Psyr_3797 0.88 +0.4
4,515,161 - +3.4
4,515,207 + -0.4

Or see this region's nucleotide sequence