Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3766 and Psyr_3767 are separated by 182 nucleotides Psyr_3767 and Psyr_3768 are separated by 458 nucleotides Psyr_3768 and Psyr_3769 are separated by 281 nucleotides
Psyr_3766: Psyr_3766 - hypothetical protein, at 4,483,919 to 4,484,650
_3766
Psyr_3767: Psyr_3767 - regulatory protein, LuxR, at 4,484,833 to 4,485,102
_3767
Psyr_3768: Psyr_3768 - General substrate transporter:Major facilitator superfamily, at 4,485,561 to 4,486,877
_3768
Psyr_3769: Psyr_3769 - TonB-dependent siderophore receptor, at 4,487,159 to 4,489,333
_3769
Position (kb) 4485
4486
4487 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4484.572 kb on + strand, within Psyr_3766 at 4484.572 kb on + strand, within Psyr_3766 at 4484.573 kb on - strand, within Psyr_3766 at 4484.575 kb on + strand, within Psyr_3766 at 4484.576 kb on - strand, within Psyr_3766 at 4484.576 kb on - strand, within Psyr_3766 at 4484.761 kb on + strand at 4484.762 kb on - strand at 4484.812 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.834 kb on + strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.835 kb on - strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.838 kb on + strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.839 kb on - strand at 4484.872 kb on - strand, within Psyr_3767 at 4484.872 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.903 kb on - strand, within Psyr_3767 at 4484.908 kb on + strand, within Psyr_3767 at 4484.909 kb on - strand, within Psyr_3767 at 4484.941 kb on + strand, within Psyr_3767 at 4484.941 kb on + strand, within Psyr_3767 at 4484.942 kb on - strand, within Psyr_3767 at 4484.987 kb on + strand, within Psyr_3767 at 4485.027 kb on + strand, within Psyr_3767 at 4485.027 kb on + strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.028 kb on - strand, within Psyr_3767 at 4485.084 kb on + strand at 4485.085 kb on - strand at 4485.085 kb on - strand at 4485.124 kb on + strand at 4485.137 kb on - strand at 4485.316 kb on + strand at 4485.317 kb on - strand at 4485.317 kb on - strand at 4485.317 kb on - strand at 4485.320 kb on + strand at 4485.387 kb on + strand at 4485.388 kb on - strand at 4485.388 kb on - strand at 4485.388 kb on - strand at 4485.444 kb on + strand at 4485.619 kb on - strand at 4485.661 kb on + strand at 4485.661 kb on + strand at 4485.661 kb on + strand at 4485.661 kb on + strand at 4485.662 kb on - strand at 4485.662 kb on - strand at 4485.662 kb on - strand at 4485.662 kb on - strand at 4485.680 kb on + strand at 4485.681 kb on - strand at 4485.736 kb on + strand, within Psyr_3768 at 4485.748 kb on + strand, within Psyr_3768 at 4485.748 kb on + strand, within Psyr_3768 at 4485.748 kb on + strand, within Psyr_3768 at 4485.748 kb on + strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.749 kb on - strand, within Psyr_3768 at 4485.850 kb on + strand, within Psyr_3768 at 4485.893 kb on - strand, within Psyr_3768 at 4485.893 kb on - strand, within Psyr_3768 at 4485.893 kb on - strand, within Psyr_3768 at 4485.928 kb on + strand, within Psyr_3768 at 4485.928 kb on + strand, within Psyr_3768 at 4485.928 kb on + strand, within Psyr_3768 at 4485.928 kb on + strand, within Psyr_3768 at 4485.929 kb on - strand, within Psyr_3768 at 4485.929 kb on - strand, within Psyr_3768 at 4485.929 kb on - strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.990 kb on + strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4485.991 kb on - strand, within Psyr_3768 at 4486.047 kb on - strand, within Psyr_3768 at 4486.089 kb on + strand, within Psyr_3768 at 4486.270 kb on - strand, within Psyr_3768 at 4486.292 kb on + strand, within Psyr_3768 at 4486.292 kb on + strand, within Psyr_3768 at 4486.293 kb on - strand, within Psyr_3768 at 4486.396 kb on - strand, within Psyr_3768 at 4486.540 kb on + strand, within Psyr_3768 at 4486.541 kb on - strand, within Psyr_3768 at 4486.541 kb on - strand, within Psyr_3768 at 4486.644 kb on + strand, within Psyr_3768 at 4486.828 kb on + strand at 4486.828 kb on + strand at 4486.829 kb on - strand at 4486.829 kb on - strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.933 kb on + strand at 4486.933 kb on + strand at 4486.958 kb on - strand at 4486.996 kb on + strand at 4486.997 kb on - strand at 4486.997 kb on - strand at 4487.147 kb on - strand at 4487.215 kb on - strand at 4487.215 kb on - strand at 4487.229 kb on + strand at 4487.229 kb on + strand at 4487.229 kb on + strand at 4487.230 kb on - strand at 4487.230 kb on - strand at 4487.250 kb on + strand at 4487.347 kb on - strand at 4487.382 kb on + strand, within Psyr_3769 at 4487.382 kb on + strand, within Psyr_3769 at 4487.383 kb on - strand, within Psyr_3769 at 4487.397 kb on + strand, within Psyr_3769 at 4487.397 kb on + strand, within Psyr_3769 at 4487.443 kb on - strand, within Psyr_3769 at 4487.499 kb on + strand, within Psyr_3769 at 4487.555 kb on + strand, within Psyr_3769 at 4487.556 kb on - strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.641 kb on + strand, within Psyr_3769 at 4487.642 kb on - strand, within Psyr_3769 at 4487.642 kb on - strand, within Psyr_3769 at 4487.664 kb on + strand, within Psyr_3769 at 4487.724 kb on + strand, within Psyr_3769 at 4487.724 kb on + strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.838 kb on + strand, within Psyr_3769 at 4487.865 kb on + strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,484,572 + Psyr_3766 0.89 +1.1 4,484,572 + Psyr_3766 0.89 -4.0 4,484,573 - Psyr_3766 0.89 -0.3 4,484,575 + Psyr_3766 0.90 -4.2 4,484,576 - Psyr_3766 0.90 +2.9 4,484,576 - Psyr_3766 0.90 +1.1 4,484,761 + -3.6 4,484,762 - +0.4 4,484,812 + +2.1 4,484,834 + -4.6 4,484,834 + -3.9 4,484,834 + +0.1 4,484,834 + -0.8 4,484,834 + +0.1 4,484,834 + -3.3 4,484,834 + -3.9 4,484,834 + -4.0 4,484,834 + +0.1 4,484,834 + -0.9 4,484,834 + -3.1 4,484,834 + +0.1 4,484,834 + -2.7 4,484,834 + +1.1 4,484,834 + +2.7 4,484,835 - +2.0 4,484,835 - -0.8 4,484,835 - -0.5 4,484,835 - -0.6 4,484,835 - -0.4 4,484,835 - +0.7 4,484,835 - -0.9 4,484,835 - +2.4 4,484,835 - +3.1 4,484,835 - -3.0 4,484,835 - -0.4 4,484,838 + -3.9 4,484,838 + -2.9 4,484,838 + -1.2 4,484,838 + +1.1 4,484,838 + +0.1 4,484,838 + +0.1 4,484,838 + +2.9 4,484,839 - +4.7 4,484,839 - -1.9 4,484,839 - -1.5 4,484,839 - +0.5 4,484,839 - +1.4 4,484,839 - +0.1 4,484,839 - +1.7 4,484,839 - -0.2 4,484,839 - +1.4 4,484,872 - Psyr_3767 0.14 +2.1 4,484,872 - Psyr_3767 0.14 -1.7 4,484,903 - Psyr_3767 0.26 -0.2 4,484,903 - Psyr_3767 0.26 -2.1 4,484,903 - Psyr_3767 0.26 -0.6 4,484,908 + Psyr_3767 0.28 -0.2 4,484,909 - Psyr_3767 0.28 +2.7 4,484,941 + Psyr_3767 0.40 -2.3 4,484,941 + Psyr_3767 0.40 -2.6 4,484,942 - Psyr_3767 0.40 -2.3 4,484,987 + Psyr_3767 0.57 +2.4 4,485,027 + Psyr_3767 0.72 +0.1 4,485,027 + Psyr_3767 0.72 +0.1 4,485,028 - Psyr_3767 0.72 +2.4 4,485,028 - Psyr_3767 0.72 -3.2 4,485,028 - Psyr_3767 0.72 -1.7 4,485,084 + +0.1 4,485,085 - -0.8 4,485,085 - +1.1 4,485,124 + +0.1 4,485,137 - -1.9 4,485,316 + +2.1 4,485,317 - +1.7 4,485,317 - +1.1 4,485,317 - -3.3 4,485,320 + +0.8 4,485,387 + -0.4 4,485,388 - -1.7 4,485,388 - -1.9 4,485,388 - +1.1 4,485,444 + -0.9 4,485,619 - +3.1 4,485,661 + +2.9 4,485,661 + +2.1 4,485,661 + +3.3 4,485,661 + -1.8 4,485,662 - -0.3 4,485,662 - +3.8 4,485,662 - -1.7 4,485,662 - -0.4 4,485,680 + -0.4 4,485,681 - +3.7 4,485,736 + Psyr_3768 0.13 +0.1 4,485,748 + Psyr_3768 0.14 +0.1 4,485,748 + Psyr_3768 0.14 +0.1 4,485,748 + Psyr_3768 0.14 -3.1 4,485,748 + Psyr_3768 0.14 +0.1 4,485,749 - Psyr_3768 0.14 -2.4 4,485,749 - Psyr_3768 0.14 +0.1 4,485,749 - Psyr_3768 0.14 +1.1 4,485,749 - Psyr_3768 0.14 -0.0 4,485,749 - Psyr_3768 0.14 +0.1 4,485,749 - Psyr_3768 0.14 +0.0 4,485,749 - Psyr_3768 0.14 -0.1 4,485,749 - Psyr_3768 0.14 +4.1 4,485,749 - Psyr_3768 0.14 -0.4 4,485,749 - Psyr_3768 0.14 +0.3 4,485,749 - Psyr_3768 0.14 -0.2 4,485,850 + Psyr_3768 0.22 +2.7 4,485,893 - Psyr_3768 0.25 +2.7 4,485,893 - Psyr_3768 0.25 +0.5 4,485,893 - Psyr_3768 0.25 +0.3 4,485,928 + Psyr_3768 0.28 -2.6 4,485,928 + Psyr_3768 0.28 -1.8 4,485,928 + Psyr_3768 0.28 +0.1 4,485,928 + Psyr_3768 0.28 +1.3 4,485,929 - Psyr_3768 0.28 +2.9 4,485,929 - Psyr_3768 0.28 +1.1 4,485,929 - Psyr_3768 0.28 -0.0 4,485,990 + Psyr_3768 0.33 -0.8 4,485,990 + Psyr_3768 0.33 -3.1 4,485,990 + Psyr_3768 0.33 +2.1 4,485,990 + Psyr_3768 0.33 +0.1 4,485,990 + Psyr_3768 0.33 +0.1 4,485,990 + Psyr_3768 0.33 -1.0 4,485,990 + Psyr_3768 0.33 +3.6 4,485,990 + Psyr_3768 0.33 +2.7 4,485,990 + Psyr_3768 0.33 +3.4 4,485,990 + Psyr_3768 0.33 -2.0 4,485,990 + Psyr_3768 0.33 +1.7 4,485,990 + Psyr_3768 0.33 -2.6 4,485,990 + Psyr_3768 0.33 +3.8 4,485,990 + Psyr_3768 0.33 +1.9 4,485,990 + Psyr_3768 0.33 +2.4 4,485,990 + Psyr_3768 0.33 +3.3 4,485,990 + Psyr_3768 0.33 -2.1 4,485,990 + Psyr_3768 0.33 -2.4 4,485,990 + Psyr_3768 0.33 +3.1 4,485,991 - Psyr_3768 0.33 -2.6 4,485,991 - Psyr_3768 0.33 -0.1 4,485,991 - Psyr_3768 0.33 -1.9 4,485,991 - Psyr_3768 0.33 -1.2 4,485,991 - Psyr_3768 0.33 -5.1 4,485,991 - Psyr_3768 0.33 -2.2 4,485,991 - Psyr_3768 0.33 +0.6 4,485,991 - Psyr_3768 0.33 -3.9 4,485,991 - Psyr_3768 0.33 -0.2 4,485,991 - Psyr_3768 0.33 +2.7 4,485,991 - Psyr_3768 0.33 +0.1 4,485,991 - Psyr_3768 0.33 +2.9 4,485,991 - Psyr_3768 0.33 -1.4 4,485,991 - Psyr_3768 0.33 -1.0 4,485,991 - Psyr_3768 0.33 +0.7 4,485,991 - Psyr_3768 0.33 -1.1 4,485,991 - Psyr_3768 0.33 +3.8 4,485,991 - Psyr_3768 0.33 -3.8 4,485,991 - Psyr_3768 0.33 +3.3 4,485,991 - Psyr_3768 0.33 -0.4 4,485,991 - Psyr_3768 0.33 +0.1 4,485,991 - Psyr_3768 0.33 -0.8 4,485,991 - Psyr_3768 0.33 +2.4 4,485,991 - Psyr_3768 0.33 +0.3 4,486,047 - Psyr_3768 0.37 +2.4 4,486,089 + Psyr_3768 0.40 -0.6 4,486,270 - Psyr_3768 0.54 +2.7 4,486,292 + Psyr_3768 0.56 +2.9 4,486,292 + Psyr_3768 0.56 -2.2 4,486,293 - Psyr_3768 0.56 +3.1 4,486,396 - Psyr_3768 0.63 +3.1 4,486,540 + Psyr_3768 0.74 +1.7 4,486,541 - Psyr_3768 0.74 +3.6 4,486,541 - Psyr_3768 0.74 +2.4 4,486,644 + Psyr_3768 0.82 +2.7 4,486,828 + +0.2 4,486,828 + +1.4 4,486,829 - -3.2 4,486,829 - +2.1 4,486,863 + -0.3 4,486,863 + +1.7 4,486,863 + +2.4 4,486,863 + -0.2 4,486,863 + +4.5 4,486,863 + +4.8 4,486,864 - -4.5 4,486,864 - -2.2 4,486,864 - -1.5 4,486,864 - -1.7 4,486,933 + +2.9 4,486,933 + -2.7 4,486,958 - -2.2 4,486,996 + +3.3 4,486,997 - -3.4 4,486,997 - +0.1 4,487,147 - +0.8 4,487,215 - +3.4 4,487,215 - -0.1 4,487,229 + +0.6 4,487,229 + +3.8 4,487,229 + -0.7 4,487,230 - -0.2 4,487,230 - -0.2 4,487,250 + +0.1 4,487,347 - -0.7 4,487,382 + Psyr_3769 0.10 +2.7 4,487,382 + Psyr_3769 0.10 +0.8 4,487,383 - Psyr_3769 0.10 +1.8 4,487,397 + Psyr_3769 0.11 -3.9 4,487,397 + Psyr_3769 0.11 +1.8 4,487,443 - Psyr_3769 0.13 +4.5 4,487,499 + Psyr_3769 0.16 +0.1 4,487,555 + Psyr_3769 0.18 -1.6 4,487,556 - Psyr_3769 0.18 -1.0 4,487,631 + Psyr_3769 0.22 +1.7 4,487,631 + Psyr_3769 0.22 -1.5 4,487,631 + Psyr_3769 0.22 +0.1 4,487,631 + Psyr_3769 0.22 +0.1 4,487,631 + Psyr_3769 0.22 +1.7 4,487,631 + Psyr_3769 0.22 -4.6 4,487,631 + Psyr_3769 0.22 -1.0 4,487,631 + Psyr_3769 0.22 -3.6 4,487,631 + Psyr_3769 0.22 +3.3 4,487,632 - Psyr_3769 0.22 +4.1 4,487,632 - Psyr_3769 0.22 +3.7 4,487,632 - Psyr_3769 0.22 -0.1 4,487,632 - Psyr_3769 0.22 +3.8 4,487,632 - Psyr_3769 0.22 -1.2 4,487,632 - Psyr_3769 0.22 +0.1 4,487,632 - Psyr_3769 0.22 +2.4 4,487,641 + Psyr_3769 0.22 +0.1 4,487,642 - Psyr_3769 0.22 +2.1 4,487,642 - Psyr_3769 0.22 -1.5 4,487,664 + Psyr_3769 0.23 +3.3 4,487,724 + Psyr_3769 0.26 +0.1 4,487,724 + Psyr_3769 0.26 +3.1 4,487,725 - Psyr_3769 0.26 -0.3 4,487,725 - Psyr_3769 0.26 +0.8 4,487,725 - Psyr_3769 0.26 +0.1 4,487,830 - Psyr_3769 0.31 -3.1 4,487,830 - Psyr_3769 0.31 -2.9 4,487,830 - Psyr_3769 0.31 +1.7 4,487,838 + Psyr_3769 0.31 +2.4 4,487,865 + Psyr_3769 0.32 -3.1 4,487,866 - Psyr_3769 0.33 +1.7 4,487,866 - Psyr_3769 0.33 +3.6 4,487,866 - Psyr_3769 0.33 +0.1 4,487,866 - Psyr_3769 0.33 +1.6
Or see this region's nucleotide sequence