Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3738

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3736 and Psyr_3737 are separated by 95 nucleotidesPsyr_3737 and Psyr_3738 are separated by 93 nucleotidesPsyr_3738 and Psyr_3739 are separated by 177 nucleotidesPsyr_3739 and Psyr_3740 are separated by 10 nucleotides Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394 _3736 Psyr_3737: Psyr_3737 - transcriptional regulator, MarR family, at 4,451,490 to 4,451,924 _3737 Psyr_3738: Psyr_3738 - ATP-dependent DNA helicase RecQ, at 4,452,018 to 4,454,147 _3738 Psyr_3739: Psyr_3739 - conserved hypothetical protein, at 4,454,325 to 4,454,912 _3739 Psyr_3740: Psyr_3740 - Protein of unknown function DUF454, at 4,454,923 to 4,455,336 _3740 Position (kb) 4452 4453 4454 4455Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4451.037 kb on - strand, within Psyr_3736at 4451.381 kb on - strandat 4451.431 kb on + strandat 4451.432 kb on - strandat 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.739 kb on + strand, within Psyr_3737at 4451.740 kb on - strand, within Psyr_3737at 4451.740 kb on - strand, within Psyr_3737at 4451.783 kb on + strand, within Psyr_3737at 4451.950 kb on + strandat 4451.950 kb on + strandat 4451.961 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4452.020 kb on - strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.022 kb on - strandat 4452.022 kb on - strandat 4452.058 kb on + strandat 4452.058 kb on + strandat 4452.059 kb on - strandat 4452.059 kb on - strandat 4452.059 kb on - strandat 4452.235 kb on + strand, within Psyr_3738at 4452.236 kb on - strand, within Psyr_3738at 4452.236 kb on - strand, within Psyr_3738at 4452.489 kb on - strand, within Psyr_3738at 4452.703 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.899 kb on - strand, within Psyr_3738at 4452.899 kb on - strand, within Psyr_3738at 4452.899 kb on - strand, within Psyr_3738at 4453.007 kb on - strand, within Psyr_3738at 4453.154 kb on - strand, within Psyr_3738at 4453.210 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.410 kb on + strand, within Psyr_3738at 4453.411 kb on - strand, within Psyr_3738at 4453.447 kb on + strand, within Psyr_3738at 4453.447 kb on + strand, within Psyr_3738at 4453.528 kb on + strand, within Psyr_3738at 4453.687 kb on + strand, within Psyr_3738at 4453.687 kb on + strand, within Psyr_3738at 4453.687 kb on + strand, within Psyr_3738at 4453.688 kb on - strand, within Psyr_3738at 4453.688 kb on - strand, within Psyr_3738at 4453.813 kb on + strand, within Psyr_3738at 4453.814 kb on - strand, within Psyr_3738at 4454.072 kb on + strandat 4454.121 kb on - strandat 4454.124 kb on + strandat 4454.147 kb on + strandat 4454.148 kb on - strandat 4454.190 kb on + strandat 4454.190 kb on + strandat 4454.191 kb on - strandat 4454.191 kb on - strandat 4454.191 kb on - strandat 4454.192 kb on + strandat 4454.192 kb on + strandat 4454.243 kb on - strandat 4454.243 kb on - strandat 4454.287 kb on + strandat 4454.304 kb on + strandat 4454.315 kb on + strandat 4454.401 kb on - strand, within Psyr_3739at 4454.401 kb on - strand, within Psyr_3739at 4454.401 kb on - strand, within Psyr_3739at 4454.499 kb on + strand, within Psyr_3739at 4454.853 kb on + strand, within Psyr_3739at 4455.097 kb on + strand, within Psyr_3740at 4455.097 kb on + strand, within Psyr_3740at 4455.145 kb on + strand, within Psyr_3740at 4455.145 kb on + strand, within Psyr_3740at 4455.146 kb on - strand, within Psyr_3740at 4455.146 kb on - strand, within Psyr_3740

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,451,037 - Psyr_3736 0.84 -1.9
4,451,381 - +0.1
4,451,431 + +2.6
4,451,432 - +0.4
4,451,586 + Psyr_3737 0.22 -3.8
4,451,586 + Psyr_3737 0.22 +0.3
4,451,586 + Psyr_3737 0.22 -0.5
4,451,586 + Psyr_3737 0.22 -1.6
4,451,586 + Psyr_3737 0.22 +3.1
4,451,586 + Psyr_3737 0.22 -1.9
4,451,586 + Psyr_3737 0.22 -0.8
4,451,586 + Psyr_3737 0.22 +0.1
4,451,587 - Psyr_3737 0.22 +1.1
4,451,587 - Psyr_3737 0.22 -0.1
4,451,587 - Psyr_3737 0.22 +0.4
4,451,587 - Psyr_3737 0.22 -1.2
4,451,587 - Psyr_3737 0.22 -2.7
4,451,587 - Psyr_3737 0.22 -2.0
4,451,587 - Psyr_3737 0.22 +0.1
4,451,739 + Psyr_3737 0.57 -0.0
4,451,740 - Psyr_3737 0.57 +0.1
4,451,740 - Psyr_3737 0.57 +2.6
4,451,783 + Psyr_3737 0.67 +0.8
4,451,950 + +1.6
4,451,950 + +0.4
4,451,961 + -1.3
4,451,974 + -1.0
4,451,974 + -2.1
4,451,974 + -1.1
4,451,974 + +1.1
4,451,974 + -3.8
4,451,975 - -3.5
4,451,975 - -3.7
4,451,975 - -2.6
4,451,975 - +0.1
4,451,975 - -3.6
4,452,020 - -0.6
4,452,021 + -5.0
4,452,021 + -1.7
4,452,022 - +0.2
4,452,022 - -1.3
4,452,058 + +1.6
4,452,058 + +0.1
4,452,059 - +2.6
4,452,059 - +2.1
4,452,059 - +0.6
4,452,235 + Psyr_3738 0.10 -3.6
4,452,236 - Psyr_3738 0.10 +1.6
4,452,236 - Psyr_3738 0.10 -1.4
4,452,489 - Psyr_3738 0.22 -3.4
4,452,703 + Psyr_3738 0.32 -0.4
4,452,898 + Psyr_3738 0.41 -1.1
4,452,898 + Psyr_3738 0.41 +0.1
4,452,898 + Psyr_3738 0.41 -3.5
4,452,898 + Psyr_3738 0.41 +2.6
4,452,898 + Psyr_3738 0.41 +1.1
4,452,899 - Psyr_3738 0.41 +0.3
4,452,899 - Psyr_3738 0.41 +0.1
4,452,899 - Psyr_3738 0.41 -1.8
4,453,007 - Psyr_3738 0.46 -0.1
4,453,154 - Psyr_3738 0.53 +0.6
4,453,210 + Psyr_3738 0.56 +1.4
4,453,213 + Psyr_3738 0.56 -3.0
4,453,213 + Psyr_3738 0.56 +0.1
4,453,213 + Psyr_3738 0.56 -2.0
4,453,213 + Psyr_3738 0.56 +0.1
4,453,410 + Psyr_3738 0.65 +2.1
4,453,411 - Psyr_3738 0.65 -2.9
4,453,447 + Psyr_3738 0.67 +1.1
4,453,447 + Psyr_3738 0.67 +0.1
4,453,528 + Psyr_3738 0.71 -2.1
4,453,687 + Psyr_3738 0.78 -3.8
4,453,687 + Psyr_3738 0.78 -1.5
4,453,687 + Psyr_3738 0.78 -1.5
4,453,688 - Psyr_3738 0.78 -1.9
4,453,688 - Psyr_3738 0.78 -2.8
4,453,813 + Psyr_3738 0.84 +2.6
4,453,814 - Psyr_3738 0.84 -3.8
4,454,072 + +1.1
4,454,121 - +1.6
4,454,124 + +1.1
4,454,147 + +1.6
4,454,148 - -0.2
4,454,190 + +2.4
4,454,190 + -4.3
4,454,191 - -1.8
4,454,191 - +0.1
4,454,191 - -3.9
4,454,192 + -1.8
4,454,192 + -0.0
4,454,243 - -0.9
4,454,243 - +1.6
4,454,287 + -2.4
4,454,304 + +0.3
4,454,315 + +0.1
4,454,401 - Psyr_3739 0.13 +3.1
4,454,401 - Psyr_3739 0.13 -3.2
4,454,401 - Psyr_3739 0.13 +3.5
4,454,499 + Psyr_3739 0.30 -1.9
4,454,853 + Psyr_3739 0.90 -1.2
4,455,097 + Psyr_3740 0.42 -0.2
4,455,097 + Psyr_3740 0.42 -4.7
4,455,145 + Psyr_3740 0.54 +2.7
4,455,145 + Psyr_3740 0.54 -2.5
4,455,146 - Psyr_3740 0.54 +2.9
4,455,146 - Psyr_3740 0.54 +0.1

Or see this region's nucleotide sequence