Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3684

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3682 and Psyr_3683 are separated by 328 nucleotidesPsyr_3683 and Psyr_3684 are separated by 89 nucleotidesPsyr_3684 and Psyr_3685 are separated by 75 nucleotidesPsyr_3685 and Psyr_3686 are separated by 14 nucleotides Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670 _3682 Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544 _3683 Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362 _3684 Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181 _3685 Psyr_3686: Psyr_3686 - regulatory inactivation of DnaA Hda protein, at 4,372,196 to 4,372,981 _3686 Position (kb) 4370 4371 4372Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4369.708 kb on + strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.863 kb on + strandat 4369.864 kb on - strandat 4369.893 kb on + strandat 4369.918 kb on + strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4370.054 kb on + strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.226 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.301 kb on - strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.307 kb on + strand, within Psyr_3683at 4370.544 kb on + strandat 4370.558 kb on + strandat 4370.573 kb on + strandat 4370.574 kb on - strandat 4370.574 kb on - strandat 4370.631 kb on + strandat 4370.632 kb on - strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.636 kb on - strandat 4370.667 kb on - strandat 4370.713 kb on - strand, within Psyr_3684at 4370.855 kb on - strand, within Psyr_3684at 4371.130 kb on + strand, within Psyr_3684at 4371.290 kb on + strandat 4371.290 kb on + strandat 4371.291 kb on - strandat 4371.382 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.400 kb on + strandat 4371.401 kb on - strandat 4371.410 kb on - strandat 4371.450 kb on + strandat 4371.719 kb on + strand, within Psyr_3685at 4371.720 kb on - strand, within Psyr_3685at 4371.733 kb on - strand, within Psyr_3685at 4371.733 kb on - strand, within Psyr_3685at 4371.865 kb on + strand, within Psyr_3685at 4371.931 kb on + strand, within Psyr_3685at 4371.932 kb on - strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.985 kb on + strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4371.986 kb on - strand, within Psyr_3685at 4372.072 kb on + strand, within Psyr_3685at 4372.072 kb on + strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.073 kb on - strand, within Psyr_3685at 4372.094 kb on - strand, within Psyr_3685at 4372.197 kb on + strandat 4372.197 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,369,708 + +0.1
4,369,709 - +1.7
4,369,709 - +1.7
4,369,709 - -1.9
4,369,863 + -4.6
4,369,864 - +3.3
4,369,893 + -3.9
4,369,918 + +0.1
4,369,919 - -1.7
4,369,919 - -0.4
4,369,919 - +0.8
4,370,054 + Psyr_3683 0.10 +0.1
4,370,055 - Psyr_3683 0.10 +1.1
4,370,055 - Psyr_3683 0.10 -1.6
4,370,144 + Psyr_3683 0.27 +2.7
4,370,144 + Psyr_3683 0.27 -1.0
4,370,144 + Psyr_3683 0.27 -2.2
4,370,144 + Psyr_3683 0.27 +1.1
4,370,144 + Psyr_3683 0.27 +1.7
4,370,144 + Psyr_3683 0.27 -1.3
4,370,144 + Psyr_3683 0.27 +2.1
4,370,144 + Psyr_3683 0.27 +0.1
4,370,144 + Psyr_3683 0.27 -2.1
4,370,144 + Psyr_3683 0.27 +2.7
4,370,144 + Psyr_3683 0.27 -2.3
4,370,144 + Psyr_3683 0.27 -4.2
4,370,144 + Psyr_3683 0.27 -0.3
4,370,144 + Psyr_3683 0.27 +2.1
4,370,145 - Psyr_3683 0.27 +2.7
4,370,145 - Psyr_3683 0.27 +3.9
4,370,145 - Psyr_3683 0.27 -2.0
4,370,145 - Psyr_3683 0.27 +1.7
4,370,145 - Psyr_3683 0.27 +1.7
4,370,145 - Psyr_3683 0.27 -1.7
4,370,145 - Psyr_3683 0.27 +0.9
4,370,145 - Psyr_3683 0.27 -1.7
4,370,145 - Psyr_3683 0.27 -2.6
4,370,226 + Psyr_3683 0.42 +3.7
4,370,300 + Psyr_3683 0.55 +1.1
4,370,300 + Psyr_3683 0.55 +2.4
4,370,300 + Psyr_3683 0.55 +1.7
4,370,301 - Psyr_3683 0.55 +2.4
4,370,305 + Psyr_3683 0.56 -1.1
4,370,305 + Psyr_3683 0.56 +1.9
4,370,306 - Psyr_3683 0.56 +0.4
4,370,306 - Psyr_3683 0.56 +3.4
4,370,307 + Psyr_3683 0.56 -1.6
4,370,544 + +0.1
4,370,558 + -3.9
4,370,573 + -1.2
4,370,574 - +4.7
4,370,574 - +0.1
4,370,631 + +2.4
4,370,632 - +3.7
4,370,635 + +2.7
4,370,635 + +0.1
4,370,635 + +1.1
4,370,636 - -1.4
4,370,667 - -0.4
4,370,713 - Psyr_3684 0.11 +2.1
4,370,855 - Psyr_3684 0.30 +1.7
4,371,130 + Psyr_3684 0.68 -0.5
4,371,290 + -1.0
4,371,290 + +3.4
4,371,291 - -0.7
4,371,382 + +3.1
4,371,386 + -2.1
4,371,386 + -1.1
4,371,386 + -0.2
4,371,386 + +1.1
4,371,400 + -1.5
4,371,401 - +0.1
4,371,410 - +0.1
4,371,450 + -0.5
4,371,719 + Psyr_3685 0.38 -0.2
4,371,720 - Psyr_3685 0.38 +2.9
4,371,733 - Psyr_3685 0.40 -0.7
4,371,733 - Psyr_3685 0.40 -1.2
4,371,865 + Psyr_3685 0.57 -0.5
4,371,931 + Psyr_3685 0.66 +0.1
4,371,932 - Psyr_3685 0.66 -5.2
4,371,985 + Psyr_3685 0.74 +0.1
4,371,985 + Psyr_3685 0.74 -1.8
4,371,985 + Psyr_3685 0.74 -3.9
4,371,986 - Psyr_3685 0.74 -2.2
4,371,986 - Psyr_3685 0.74 +1.3
4,371,986 - Psyr_3685 0.74 -4.4
4,372,072 + Psyr_3685 0.85 -2.0
4,372,072 + Psyr_3685 0.85 +2.7
4,372,073 - Psyr_3685 0.85 -2.7
4,372,073 - Psyr_3685 0.85 -3.2
4,372,073 - Psyr_3685 0.85 -1.8
4,372,094 - Psyr_3685 0.88 -3.6
4,372,197 + -3.1
4,372,197 + +3.5

Or see this region's nucleotide sequence