Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3673
Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Mitomycin C 0.625 ug/ml |
---|---|---|---|---|---|
remove | |||||
4,359,032 | + | -3.1 | |||
4,359,032 | + | +1.1 | |||
4,359,032 | + | -1.9 | |||
4,359,032 | + | -1.3 | |||
4,359,032 | + | +0.1 | |||
4,359,032 | + | -1.7 | |||
4,359,032 | + | +3.8 | |||
4,359,033 | - | +0.1 | |||
4,359,033 | - | +4.6 | |||
4,359,033 | - | +1.1 | |||
4,359,033 | - | +2.4 | |||
4,359,169 | - | -1.1 | |||
4,359,368 | + | Psyr_3672 | 0.36 | -3.1 | |
4,359,368 | + | Psyr_3672 | 0.36 | +2.1 | |
4,359,368 | + | Psyr_3672 | 0.36 | +2.9 | |
4,359,368 | + | Psyr_3672 | 0.36 | -4.0 | |
4,359,368 | + | Psyr_3672 | 0.36 | +2.7 | |
4,359,369 | - | Psyr_3672 | 0.36 | +1.7 | |
4,359,647 | - | Psyr_3672 | 0.74 | +3.5 | |
4,359,737 | + | Psyr_3672 | 0.86 | +0.1 | |
4,360,002 | + | Psyr_3673 | 0.28 | -2.1 | |
4,360,002 | + | Psyr_3673 | 0.28 | +1.7 | |
4,360,087 | - | Psyr_3673 | 0.43 | -4.2 | |
4,360,087 | - | Psyr_3673 | 0.43 | +0.1 | |
4,360,490 | - | -0.0 | |||
4,360,640 | - | Psyr_3674 | 0.22 | +3.9 | |
4,360,715 | + | Psyr_3674 | 0.29 | +3.4 | |
4,360,988 | - | Psyr_3674 | 0.55 | -1.0 | |
4,360,988 | - | Psyr_3674 | 0.55 | +2.9 | |
4,361,229 | - | Psyr_3674 | 0.78 | +0.1 |
Or see this region's nucleotide sequence