Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3607 and Psyr_3608 are separated by 184 nucleotides Psyr_3608 and Psyr_RNA57 are separated by 131 nucleotides Psyr_RNA57 and Psyr_RNA58 are separated by 4 nucleotides Psyr_RNA58 and Psyr_RNA59 are separated by 100 nucleotides Psyr_RNA59 and Psyr_RNA60 are separated by 2 nucleotides Psyr_RNA60 and Psyr_3609 are separated by 304 nucleotides
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Psyr_3608: Psyr_3608 - Pirin, N-terminal, at 4,291,591 to 4,292,313
_3608
Psyr_RNA57: Psyr_RNA57 - tRNA-Gly, at 4,292,445 to 4,292,520
_RNA57
Psyr_RNA58: Psyr_RNA58 - tRNA-Glu, at 4,292,525 to 4,292,600
_RNA58
Psyr_RNA59: Psyr_RNA59 - tRNA-Gly, at 4,292,701 to 4,292,776
_RNA59
Psyr_RNA60: Psyr_RNA60 - tRNA-Glu, at 4,292,779 to 4,292,854
_RNA60
Psyr_3609: Psyr_3609 - conserved hypothetical protein, at 4,293,159 to 4,293,917
_3609
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4290.697 kb on + strand, within Psyr_3607 at 4290.697 kb on + strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.747 kb on - strand, within Psyr_3607 at 4290.759 kb on - strand, within Psyr_3607 at 4290.896 kb on - strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4291.044 kb on + strand, within Psyr_3607 at 4291.045 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.213 kb on + strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.368 kb on + strand at 4291.369 kb on - strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.509 kb on - strand at 4291.542 kb on + strand at 4291.543 kb on - strand at 4291.574 kb on + strand at 4291.575 kb on - strand at 4291.789 kb on + strand, within Psyr_3608 at 4291.789 kb on + strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.995 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.149 kb on + strand, within Psyr_3608 at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.861 kb on - strand at 4292.873 kb on - strand at 4292.877 kb on - strand at 4292.877 kb on - strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.045 kb on + strand at 4293.045 kb on + strand at 4293.046 kb on - strand at 4293.046 kb on - strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.091 kb on + strand at 4293.105 kb on + strand at 4293.105 kb on + strand at 4293.106 kb on - strand at 4293.123 kb on - strand at 4293.175 kb on + strand at 4293.175 kb on + strand at 4293.176 kb on - strand at 4293.176 kb on - strand at 4293.178 kb on + strand at 4293.178 kb on + strand at 4293.179 kb on - strand at 4293.179 kb on - strand at 4293.179 kb on - strand at 4293.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,290,697 + Psyr_3607 0.22 +0.3 4,290,697 + Psyr_3607 0.22 +1.3 4,290,698 - Psyr_3607 0.22 +0.1 4,290,698 - Psyr_3607 0.22 +2.1 4,290,698 - Psyr_3607 0.22 +0.1 4,290,698 - Psyr_3607 0.22 -3.7 4,290,747 - Psyr_3607 0.27 +0.1 4,290,759 - Psyr_3607 0.29 -1.1 4,290,896 - Psyr_3607 0.44 +3.9 4,290,913 + Psyr_3607 0.46 -4.0 4,290,913 + Psyr_3607 0.46 +2.4 4,290,914 - Psyr_3607 0.46 -0.7 4,290,914 - Psyr_3607 0.46 +2.1 4,290,991 + Psyr_3607 0.54 -1.4 4,290,991 + Psyr_3607 0.54 -1.7 4,291,044 + Psyr_3607 0.60 +4.1 4,291,045 - Psyr_3607 0.60 +4.2 4,291,211 - Psyr_3607 0.78 -1.1 4,291,211 - Psyr_3607 0.78 -1.7 4,291,213 + Psyr_3607 0.79 +3.2 4,291,214 - Psyr_3607 0.79 -0.2 4,291,214 - Psyr_3607 0.79 +4.0 4,291,214 - Psyr_3607 0.79 -2.9 4,291,214 - Psyr_3607 0.79 -4.2 4,291,368 + +3.2 4,291,369 - -0.9 4,291,508 + +5.3 4,291,508 + -3.3 4,291,508 + -1.1 4,291,509 - -1.9 4,291,542 + -1.9 4,291,543 - +2.6 4,291,574 + -2.8 4,291,575 - +0.2 4,291,789 + Psyr_3608 0.27 -3.4 4,291,789 + Psyr_3608 0.27 +0.3 4,291,790 - Psyr_3608 0.28 +2.6 4,291,790 - Psyr_3608 0.28 -1.4 4,291,790 - Psyr_3608 0.28 +1.6 4,291,790 - Psyr_3608 0.28 +1.1 4,291,978 + Psyr_3608 0.54 -1.3 4,291,978 + Psyr_3608 0.54 -1.6 4,291,978 + Psyr_3608 0.54 +0.1 4,291,995 + Psyr_3608 0.56 +2.9 4,292,086 + Psyr_3608 0.68 -0.6 4,292,086 + Psyr_3608 0.68 +3.2 4,292,086 + Psyr_3608 0.68 -2.3 4,292,087 - Psyr_3608 0.69 +1.6 4,292,087 - Psyr_3608 0.69 +0.1 4,292,087 - Psyr_3608 0.69 -5.0 4,292,149 + Psyr_3608 0.77 +2.1 4,292,354 + +4.9 4,292,354 + -2.3 4,292,354 + +2.9 4,292,354 + +0.3 4,292,354 + +2.6 4,292,354 + -3.5 4,292,354 + -3.7 4,292,355 - -2.1 4,292,355 - +0.1 4,292,355 - -1.7 4,292,355 - +3.9 4,292,355 - +2.9 4,292,355 - +3.6 4,292,355 - -1.0 4,292,356 + +1.1 4,292,356 + -0.9 4,292,356 + -0.6 4,292,356 + -2.7 4,292,356 + +0.1 4,292,356 + -0.9 4,292,356 + +0.1 4,292,356 + +2.6 4,292,356 + -0.6 4,292,356 + +3.5 4,292,356 + -3.6 4,292,357 - +0.5 4,292,357 - +3.6 4,292,357 - +4.1 4,292,358 + +0.4 4,292,358 + -2.2 4,292,358 + -2.3 4,292,358 + +3.2 4,292,358 + -2.2 4,292,358 + +3.5 4,292,359 - +3.1 4,292,359 - +0.4 4,292,359 - -1.1 4,292,359 - -1.4 4,292,359 - -2.4 4,292,861 - +2.4 4,292,873 - +0.1 4,292,877 - +2.1 4,292,877 - -2.7 4,293,043 + +0.1 4,293,043 + +0.1 4,293,043 + -1.4 4,293,043 + -1.6 4,293,043 + -4.9 4,293,043 + +2.4 4,293,043 + -3.8 4,293,043 + -1.5 4,293,043 + +3.2 4,293,044 - -3.3 4,293,044 - +0.1 4,293,044 - +2.4 4,293,044 - +0.1 4,293,044 - +1.3 4,293,044 - +1.1 4,293,044 - +0.3 4,293,044 - +1.1 4,293,044 - -1.3 4,293,044 - +3.5 4,293,044 - +4.0 4,293,044 - +0.1 4,293,044 - -3.5 4,293,044 - -1.3 4,293,044 - -2.8 4,293,044 - +0.4 4,293,044 - -1.7 4,293,044 - +1.6 4,293,044 - +1.6 4,293,045 + +0.1 4,293,045 + -0.9 4,293,046 - -0.8 4,293,046 - +0.1 4,293,047 + -2.9 4,293,047 + +2.1 4,293,047 + +2.4 4,293,047 + +0.1 4,293,047 + +0.1 4,293,047 + -3.9 4,293,047 + -0.9 4,293,047 + +2.6 4,293,047 + -0.6 4,293,047 + +0.1 4,293,047 + -0.3 4,293,048 - -0.5 4,293,048 - +2.9 4,293,048 - +2.1 4,293,048 - +0.1 4,293,048 - -0.9 4,293,048 - +3.1 4,293,048 - +0.1 4,293,048 - -2.3 4,293,048 - +3.1 4,293,048 - -0.6 4,293,082 + +1.6 4,293,082 + +3.5 4,293,082 + -2.6 4,293,082 + -0.3 4,293,082 + -3.2 4,293,082 + +1.1 4,293,083 - -0.9 4,293,083 - -2.9 4,293,083 - +0.1 4,293,083 - +1.1 4,293,083 - -0.1 4,293,083 - -2.9 4,293,083 - +0.1 4,293,083 - -4.3 4,293,083 - +2.6 4,293,091 + -2.1 4,293,105 + -1.1 4,293,105 + +3.1 4,293,106 - -3.1 4,293,123 - +0.1 4,293,175 + -0.7 4,293,175 + +2.4 4,293,176 - +1.6 4,293,176 - +2.4 4,293,178 + +0.1 4,293,178 + -1.7 4,293,179 - +0.1 4,293,179 - -2.8 4,293,179 - +0.1 4,293,186 - +1.6
Or see this region's nucleotide sequence