Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3564 and Psyr_3565 are separated by 132 nucleotides Psyr_3565 and Psyr_3566 are separated by 236 nucleotides
Psyr_3564: Psyr_3564 - arginine succinyltransferase, at 4,245,316 to 4,246,347
_3564
Psyr_3565: Psyr_3565 - succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme, at 4,246,480 to 4,247,697
_3565
Psyr_3566: Psyr_3566 - transcriptional regulator, AraC family, at 4,247,934 to 4,248,989
_3566
Position (kb) 4246
4247
4248 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4245.599 kb on + strand, within Psyr_3564 at 4245.599 kb on + strand, within Psyr_3564 at 4245.599 kb on + strand, within Psyr_3564 at 4245.599 kb on + strand, within Psyr_3564 at 4245.599 kb on + strand, within Psyr_3564 at 4245.600 kb on - strand, within Psyr_3564 at 4245.600 kb on - strand, within Psyr_3564 at 4245.600 kb on - strand at 4245.600 kb on - strand, within Psyr_3564 at 4245.707 kb on + strand, within Psyr_3564 at 4245.707 kb on + strand, within Psyr_3564 at 4245.707 kb on + strand, within Psyr_3564 at 4245.707 kb on + strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.708 kb on - strand, within Psyr_3564 at 4245.783 kb on - strand, within Psyr_3564 at 4245.849 kb on - strand, within Psyr_3564 at 4245.968 kb on + strand, within Psyr_3564 at 4245.968 kb on + strand, within Psyr_3564 at 4245.969 kb on - strand, within Psyr_3564 at 4246.085 kb on + strand, within Psyr_3564 at 4246.172 kb on + strand, within Psyr_3564 at 4246.173 kb on - strand, within Psyr_3564 at 4246.338 kb on + strand at 4246.362 kb on + strand at 4246.362 kb on + strand at 4246.362 kb on + strand at 4246.363 kb on - strand at 4246.363 kb on - strand at 4246.393 kb on + strand at 4246.393 kb on + strand at 4246.394 kb on - strand at 4246.394 kb on - strand at 4246.713 kb on - strand, within Psyr_3565 at 4246.844 kb on + strand, within Psyr_3565 at 4246.844 kb on + strand, within Psyr_3565 at 4246.844 kb on + strand, within Psyr_3565 at 4246.844 kb on + strand, within Psyr_3565 at 4246.845 kb on - strand, within Psyr_3565 at 4246.845 kb on - strand, within Psyr_3565 at 4246.976 kb on + strand, within Psyr_3565 at 4246.976 kb on + strand, within Psyr_3565 at 4246.976 kb on + strand, within Psyr_3565 at 4246.976 kb on + strand, within Psyr_3565 at 4246.977 kb on - strand, within Psyr_3565 at 4246.977 kb on - strand, within Psyr_3565 at 4246.977 kb on - strand, within Psyr_3565 at 4246.977 kb on - strand, within Psyr_3565 at 4247.180 kb on + strand, within Psyr_3565 at 4247.181 kb on - strand, within Psyr_3565 at 4247.228 kb on + strand, within Psyr_3565 at 4247.228 kb on + strand, within Psyr_3565 at 4247.229 kb on - strand, within Psyr_3565 at 4247.229 kb on - strand, within Psyr_3565 at 4247.382 kb on + strand, within Psyr_3565 at 4247.382 kb on + strand, within Psyr_3565 at 4247.533 kb on + strand, within Psyr_3565 at 4247.533 kb on + strand, within Psyr_3565 at 4247.533 kb on + strand, within Psyr_3565 at 4247.534 kb on - strand, within Psyr_3565 at 4247.534 kb on - strand, within Psyr_3565 at 4247.534 kb on - strand, within Psyr_3565 at 4247.636 kb on + strand at 4247.650 kb on + strand at 4247.753 kb on + strand at 4247.753 kb on + strand at 4247.753 kb on + strand at 4247.753 kb on + strand at 4247.754 kb on - strand at 4247.754 kb on - strand at 4247.754 kb on - strand at 4247.754 kb on - strand at 4247.754 kb on - strand at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.146 kb on - strand, within Psyr_3566 at 4248.148 kb on + strand, within Psyr_3566 at 4248.149 kb on - strand, within Psyr_3566 at 4248.149 kb on - strand, within Psyr_3566 at 4248.173 kb on - strand, within Psyr_3566 at 4248.173 kb on - strand, within Psyr_3566
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,245,599 + Psyr_3564 0.27 +0.0 4,245,599 + Psyr_3564 0.27 +0.0 4,245,599 + Psyr_3564 0.27 +0.0 4,245,599 + Psyr_3564 0.27 +3.2 4,245,599 + Psyr_3564 0.27 -2.3 4,245,600 - Psyr_3564 0.28 -2.1 4,245,600 - Psyr_3564 0.28 -1.5 4,245,600 - -3.0 4,245,600 - Psyr_3564 0.28 +1.0 4,245,707 + Psyr_3564 0.38 +1.6 4,245,707 + Psyr_3564 0.38 +1.0 4,245,707 + Psyr_3564 0.38 -2.8 4,245,707 + Psyr_3564 0.38 -1.3 4,245,708 - Psyr_3564 0.38 +1.6 4,245,708 - Psyr_3564 0.38 +4.2 4,245,708 - Psyr_3564 0.38 +1.6 4,245,708 - Psyr_3564 0.38 +1.3 4,245,708 - Psyr_3564 0.38 +1.0 4,245,708 - Psyr_3564 0.38 -2.7 4,245,708 - Psyr_3564 0.38 -2.0 4,245,708 - Psyr_3564 0.38 -2.9 4,245,708 - Psyr_3564 0.38 +3.0 4,245,783 - Psyr_3564 0.45 -0.8 4,245,849 - Psyr_3564 0.52 -2.8 4,245,968 + Psyr_3564 0.63 +4.0 4,245,968 + Psyr_3564 0.63 -1.1 4,245,969 - Psyr_3564 0.63 +1.0 4,246,085 + Psyr_3564 0.75 -0.2 4,246,172 + Psyr_3564 0.83 -1.5 4,246,173 - Psyr_3564 0.83 -2.2 4,246,338 + +0.3 4,246,362 + +0.1 4,246,362 + -0.3 4,246,362 + +2.4 4,246,363 - -0.5 4,246,363 - -3.0 4,246,393 + -0.6 4,246,393 + +2.0 4,246,394 - +0.0 4,246,394 - +0.0 4,246,713 - Psyr_3565 0.19 -2.5 4,246,844 + Psyr_3565 0.30 -3.1 4,246,844 + Psyr_3565 0.30 -2.6 4,246,844 + Psyr_3565 0.30 -0.4 4,246,844 + Psyr_3565 0.30 +0.0 4,246,845 - Psyr_3565 0.30 -3.0 4,246,845 - Psyr_3565 0.30 +0.4 4,246,976 + Psyr_3565 0.41 +2.0 4,246,976 + Psyr_3565 0.41 +0.0 4,246,976 + Psyr_3565 0.41 -1.1 4,246,976 + Psyr_3565 0.41 -1.3 4,246,977 - Psyr_3565 0.41 +2.6 4,246,977 - Psyr_3565 0.41 -2.1 4,246,977 - Psyr_3565 0.41 +1.0 4,246,977 - Psyr_3565 0.41 +3.6 4,247,180 + Psyr_3565 0.57 +2.8 4,247,181 - Psyr_3565 0.58 +4.2 4,247,228 + Psyr_3565 0.61 +4.4 4,247,228 + Psyr_3565 0.61 -1.2 4,247,229 - Psyr_3565 0.61 -4.1 4,247,229 - Psyr_3565 0.61 +3.0 4,247,382 + Psyr_3565 0.74 -2.2 4,247,382 + Psyr_3565 0.74 +0.0 4,247,533 + Psyr_3565 0.86 +0.0 4,247,533 + Psyr_3565 0.86 -1.1 4,247,533 + Psyr_3565 0.86 +2.8 4,247,534 - Psyr_3565 0.87 +2.0 4,247,534 - Psyr_3565 0.87 -2.6 4,247,534 - Psyr_3565 0.87 -2.1 4,247,636 + -2.3 4,247,650 + +4.7 4,247,753 + -1.2 4,247,753 + +1.0 4,247,753 + +1.6 4,247,753 + +0.0 4,247,754 - +3.7 4,247,754 - +3.0 4,247,754 - +2.0 4,247,754 - -2.9 4,247,754 - -0.0 4,248,146 - Psyr_3566 0.20 +0.0 4,248,146 - Psyr_3566 0.20 -2.4 4,248,146 - Psyr_3566 0.20 +0.0 4,248,146 - Psyr_3566 0.20 -4.9 4,248,148 + Psyr_3566 0.20 -2.8 4,248,149 - Psyr_3566 0.20 -1.9 4,248,149 - Psyr_3566 0.20 -3.0 4,248,173 - Psyr_3566 0.23 +2.6 4,248,173 - Psyr_3566 0.23 -3.3
Or see this region's nucleotide sequence