Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3558

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3557 and Psyr_3558 are separated by 504 nucleotidesPsyr_3558 and Psyr_3559 are separated by 105 nucleotides Psyr_3557: Psyr_3557 - L-threonine aldolase, at 4,237,871 to 4,238,875 _3557 Psyr_3558: Psyr_3558 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,239,380 to 4,239,892 _3558 Psyr_3559: Psyr_3559 - succinylglutamate desuccinylase, at 4,239,998 to 4,241,005 _3559 Position (kb) 4239 4240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.610 kb on + strand, within Psyr_3557at 4238.611 kb on - strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.614 kb on + strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.615 kb on - strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.616 kb on + strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.617 kb on - strand, within Psyr_3557at 4238.643 kb on + strand, within Psyr_3557at 4238.643 kb on + strand, within Psyr_3557at 4238.643 kb on + strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.644 kb on - strand, within Psyr_3557at 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.952 kb on + strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.953 kb on - strandat 4238.960 kb on - strandat 4238.995 kb on + strandat 4238.995 kb on + strandat 4238.995 kb on + strandat 4238.996 kb on - strandat 4239.012 kb on + strandat 4239.012 kb on + strandat 4239.012 kb on + strandat 4239.013 kb on - strandat 4239.013 kb on - strandat 4239.013 kb on - strandat 4239.014 kb on + strandat 4239.015 kb on - strandat 4239.015 kb on - strandat 4239.015 kb on - strandat 4239.050 kb on + strandat 4239.050 kb on + strandat 4239.050 kb on + strandat 4239.051 kb on - strandat 4239.051 kb on - strandat 4239.051 kb on - strandat 4239.051 kb on - strandat 4239.051 kb on - strandat 4239.051 kb on - strandat 4239.077 kb on + strandat 4239.077 kb on + strandat 4239.078 kb on - strandat 4239.145 kb on + strandat 4239.182 kb on + strandat 4239.229 kb on + strandat 4239.229 kb on + strandat 4239.277 kb on - strandat 4239.277 kb on - strandat 4239.284 kb on - strandat 4239.316 kb on + strandat 4239.481 kb on + strand, within Psyr_3558at 4239.647 kb on + strand, within Psyr_3558at 4239.647 kb on + strand, within Psyr_3558at 4239.648 kb on - strand, within Psyr_3558at 4239.648 kb on - strand, within Psyr_3558at 4239.648 kb on - strand, within Psyr_3558at 4239.648 kb on - strand, within Psyr_3558at 4239.648 kb on - strand, within Psyr_3558at 4239.907 kb on - strandat 4239.927 kb on - strandat 4239.927 kb on - strandat 4240.025 kb on + strandat 4240.140 kb on + strand, within Psyr_3559at 4240.395 kb on + strand, within Psyr_3559at 4240.395 kb on + strand, within Psyr_3559at 4240.395 kb on + strand, within Psyr_3559at 4240.395 kb on + strand, within Psyr_3559at 4240.396 kb on - strand, within Psyr_3559at 4240.396 kb on - strand, within Psyr_3559at 4240.396 kb on - strand, within Psyr_3559at 4240.396 kb on - strand, within Psyr_3559at 4240.396 kb on - strand, within Psyr_3559at 4240.402 kb on - strand, within Psyr_3559at 4240.563 kb on + strand, within Psyr_3559at 4240.563 kb on + strand, within Psyr_3559at 4240.747 kb on + strand, within Psyr_3559at 4240.747 kb on + strand, within Psyr_3559at 4240.747 kb on + strand, within Psyr_3559at 4240.747 kb on + strand, within Psyr_3559at 4240.748 kb on - strand, within Psyr_3559at 4240.748 kb on - strand, within Psyr_3559at 4240.748 kb on - strand, within Psyr_3559at 4240.748 kb on - strand, within Psyr_3559

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,238,610 + Psyr_3557 0.74 -2.8
4,238,610 + Psyr_3557 0.74 +0.0
4,238,610 + Psyr_3557 0.74 +3.0
4,238,610 + Psyr_3557 0.74 +0.0
4,238,610 + Psyr_3557 0.74 -3.1
4,238,610 + Psyr_3557 0.74 -2.0
4,238,610 + Psyr_3557 0.74 -0.3
4,238,611 - Psyr_3557 0.74 -0.3
4,238,614 + Psyr_3557 0.74 -1.3
4,238,614 + Psyr_3557 0.74 -2.7
4,238,614 + Psyr_3557 0.74 +0.0
4,238,614 + Psyr_3557 0.74 +0.0
4,238,614 + Psyr_3557 0.74 +0.6
4,238,614 + Psyr_3557 0.74 -0.8
4,238,614 + Psyr_3557 0.74 +3.2
4,238,615 - Psyr_3557 0.74 -1.8
4,238,615 - Psyr_3557 0.74 +2.0
4,238,615 - Psyr_3557 0.74 -0.3
4,238,615 - Psyr_3557 0.74 -0.5
4,238,615 - Psyr_3557 0.74 -1.2
4,238,615 - Psyr_3557 0.74 +2.0
4,238,615 - Psyr_3557 0.74 +3.4
4,238,615 - Psyr_3557 0.74 -0.4
4,238,616 + Psyr_3557 0.74 -2.2
4,238,616 + Psyr_3557 0.74 -2.0
4,238,616 + Psyr_3557 0.74 +1.6
4,238,616 + Psyr_3557 0.74 -3.3
4,238,616 + Psyr_3557 0.74 +2.6
4,238,616 + Psyr_3557 0.74 -2.5
4,238,616 + Psyr_3557 0.74 -1.8
4,238,616 + Psyr_3557 0.74 -1.7
4,238,616 + Psyr_3557 0.74 -0.8
4,238,617 - Psyr_3557 0.74 -1.2
4,238,617 - Psyr_3557 0.74 +3.6
4,238,617 - Psyr_3557 0.74 -1.0
4,238,617 - Psyr_3557 0.74 +2.0
4,238,617 - Psyr_3557 0.74 -1.3
4,238,617 - Psyr_3557 0.74 +1.0
4,238,643 + Psyr_3557 0.77 -2.2
4,238,643 + Psyr_3557 0.77 -2.7
4,238,643 + Psyr_3557 0.77 +2.4
4,238,644 - Psyr_3557 0.77 +0.0
4,238,644 - Psyr_3557 0.77 -1.4
4,238,644 - Psyr_3557 0.77 -1.8
4,238,644 - Psyr_3557 0.77 -0.1
4,238,644 - Psyr_3557 0.77 +2.9
4,238,644 - Psyr_3557 0.77 -1.2
4,238,644 - Psyr_3557 0.77 +0.6
4,238,644 - Psyr_3557 0.77 +0.2
4,238,644 - Psyr_3557 0.77 -2.7
4,238,644 - Psyr_3557 0.77 +1.0
4,238,952 + -2.3
4,238,952 + -1.1
4,238,952 + +0.0
4,238,952 + -1.0
4,238,952 + +2.4
4,238,952 + -1.3
4,238,952 + -0.5
4,238,952 + +3.5
4,238,952 + -2.2
4,238,953 - -0.4
4,238,953 - -3.8
4,238,953 - +4.3
4,238,953 - -0.8
4,238,953 - -4.0
4,238,953 - +4.7
4,238,953 - -0.5
4,238,953 - -0.9
4,238,953 - +1.2
4,238,953 - -3.9
4,238,960 - -2.6
4,238,995 + -1.4
4,238,995 + +1.0
4,238,995 + +2.6
4,238,996 - -4.6
4,239,012 + +0.0
4,239,012 + -2.6
4,239,012 + -3.3
4,239,013 - -2.9
4,239,013 - +2.0
4,239,013 - +3.2
4,239,014 + +2.6
4,239,015 - -0.6
4,239,015 - -1.7
4,239,015 - +2.9
4,239,050 + -3.8
4,239,050 + +2.6
4,239,050 + -3.0
4,239,051 - +3.9
4,239,051 - +2.6
4,239,051 - +2.4
4,239,051 - +1.0
4,239,051 - -1.3
4,239,051 - +1.0
4,239,077 + -4.6
4,239,077 + +0.6
4,239,078 - +0.0
4,239,145 + +2.9
4,239,182 + -1.3
4,239,229 + -0.3
4,239,229 + +1.3
4,239,277 - -2.5
4,239,277 - -2.0
4,239,284 - +3.6
4,239,316 + +1.0
4,239,481 + Psyr_3558 0.20 -1.0
4,239,647 + Psyr_3558 0.52 -3.1
4,239,647 + Psyr_3558 0.52 +1.6
4,239,648 - Psyr_3558 0.52 +2.9
4,239,648 - Psyr_3558 0.52 -1.3
4,239,648 - Psyr_3558 0.52 +1.0
4,239,648 - Psyr_3558 0.52 -0.7
4,239,648 - Psyr_3558 0.52 -1.4
4,239,907 - -2.0
4,239,927 - -1.4
4,239,927 - +4.0
4,240,025 + -1.6
4,240,140 + Psyr_3559 0.14 -1.6
4,240,395 + Psyr_3559 0.39 +2.0
4,240,395 + Psyr_3559 0.39 +1.6
4,240,395 + Psyr_3559 0.39 +2.4
4,240,395 + Psyr_3559 0.39 -0.3
4,240,396 - Psyr_3559 0.39 -0.7
4,240,396 - Psyr_3559 0.39 -2.0
4,240,396 - Psyr_3559 0.39 -0.5
4,240,396 - Psyr_3559 0.39 +2.4
4,240,396 - Psyr_3559 0.39 -2.8
4,240,402 - Psyr_3559 0.40 +1.6
4,240,563 + Psyr_3559 0.56 -4.4
4,240,563 + Psyr_3559 0.56 +0.0
4,240,747 + Psyr_3559 0.74 -1.8
4,240,747 + Psyr_3559 0.74 +0.1
4,240,747 + Psyr_3559 0.74 -1.4
4,240,747 + Psyr_3559 0.74 +2.6
4,240,748 - Psyr_3559 0.74 +0.0
4,240,748 - Psyr_3559 0.74 -1.6
4,240,748 - Psyr_3559 0.74 -0.5
4,240,748 - Psyr_3559 0.74 +2.6

Or see this region's nucleotide sequence