Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3456 and Psyr_3457 overlap by 8 nucleotides Psyr_3457 and Psyr_3458 are separated by 15 nucleotides Psyr_3458 and Psyr_3459 are separated by 236 nucleotides
Psyr_3456: Psyr_3456 - Flagellar motor switch protein FliG, at 4,119,069 to 4,120,085
_3456
Psyr_3457: Psyr_3457 - Flagellar FliF M-ring protein, at 4,120,078 to 4,121,862
_3457
Psyr_3458: Psyr_3458 - Flagellar hook-basal body complex protein FliE, at 4,121,878 to 4,122,213
_3458
Psyr_3459: Psyr_3459 - Helix-turn-helix, Fis-type, at 4,122,450 to 4,123,865
_3459
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4119.103 kb on - strand at 4119.125 kb on + strand at 4119.126 kb on - strand at 4119.288 kb on + strand, within Psyr_3456 at 4119.306 kb on + strand, within Psyr_3456 at 4119.307 kb on - strand, within Psyr_3456 at 4119.307 kb on - strand, within Psyr_3456 at 4119.307 kb on - strand, within Psyr_3456 at 4119.307 kb on - strand, within Psyr_3456 at 4119.570 kb on + strand, within Psyr_3456 at 4119.571 kb on - strand, within Psyr_3456 at 4119.665 kb on - strand, within Psyr_3456 at 4119.761 kb on + strand, within Psyr_3456 at 4119.762 kb on - strand, within Psyr_3456 at 4119.771 kb on + strand, within Psyr_3456 at 4119.772 kb on - strand, within Psyr_3456 at 4119.772 kb on - strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.841 kb on + strand, within Psyr_3456 at 4119.842 kb on - strand, within Psyr_3456 at 4119.842 kb on - strand, within Psyr_3456 at 4119.842 kb on - strand, within Psyr_3456 at 4119.842 kb on - strand, within Psyr_3456 at 4119.842 kb on - strand, within Psyr_3456 at 4120.033 kb on - strand at 4120.172 kb on + strand at 4120.173 kb on - strand at 4120.200 kb on + strand at 4120.200 kb on + strand at 4120.200 kb on + strand at 4120.200 kb on + strand at 4120.201 kb on - strand at 4120.222 kb on + strand at 4120.342 kb on + strand, within Psyr_3457 at 4120.343 kb on - strand, within Psyr_3457 at 4120.418 kb on + strand, within Psyr_3457 at 4120.418 kb on + strand, within Psyr_3457 at 4120.418 kb on + strand, within Psyr_3457 at 4120.418 kb on + strand, within Psyr_3457 at 4121.031 kb on - strand, within Psyr_3457 at 4121.277 kb on - strand, within Psyr_3457 at 4121.391 kb on + strand, within Psyr_3457 at 4121.506 kb on + strand, within Psyr_3457 at 4121.532 kb on + strand, within Psyr_3457 at 4121.594 kb on + strand, within Psyr_3457 at 4121.594 kb on + strand, within Psyr_3457 at 4121.594 kb on + strand, within Psyr_3457 at 4121.595 kb on - strand, within Psyr_3457 at 4121.595 kb on - strand, within Psyr_3457 at 4121.595 kb on - strand, within Psyr_3457 at 4121.793 kb on + strand at 4121.842 kb on - strand at 4121.870 kb on + strand at 4121.870 kb on + strand at 4121.870 kb on + strand at 4121.870 kb on + strand at 4121.870 kb on + strand at 4121.870 kb on + strand at 4121.871 kb on - strand at 4121.871 kb on - strand at 4121.926 kb on - strand, within Psyr_3458 at 4121.926 kb on - strand, within Psyr_3458 at 4122.187 kb on - strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.213 kb on + strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.214 kb on - strand at 4122.266 kb on + strand at 4122.267 kb on - strand at 4122.268 kb on + strand at 4122.268 kb on + strand at 4122.269 kb on - strand at 4122.392 kb on + strand at 4122.392 kb on + strand at 4122.392 kb on + strand at 4122.392 kb on + strand at 4122.393 kb on - strand at 4122.406 kb on + strand at 4122.407 kb on - strand at 4122.521 kb on + strand at 4122.521 kb on + strand at 4122.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,119,103 - +3.0 4,119,125 + +4.3 4,119,126 - -0.9 4,119,288 + Psyr_3456 0.22 +4.2 4,119,306 + Psyr_3456 0.23 +2.0 4,119,307 - Psyr_3456 0.23 -0.0 4,119,307 - Psyr_3456 0.23 +3.0 4,119,307 - Psyr_3456 0.23 -1.1 4,119,307 - Psyr_3456 0.23 -0.3 4,119,570 + Psyr_3456 0.49 -2.9 4,119,571 - Psyr_3456 0.49 +3.0 4,119,665 - Psyr_3456 0.59 -1.0 4,119,761 + Psyr_3456 0.68 -2.5 4,119,762 - Psyr_3456 0.68 -1.1 4,119,771 + Psyr_3456 0.69 -0.0 4,119,772 - Psyr_3456 0.69 +0.8 4,119,772 - Psyr_3456 0.69 -1.0 4,119,841 + Psyr_3456 0.76 +3.0 4,119,841 + Psyr_3456 0.76 -0.0 4,119,841 + Psyr_3456 0.76 -5.1 4,119,841 + Psyr_3456 0.76 -1.0 4,119,841 + Psyr_3456 0.76 +2.3 4,119,841 + Psyr_3456 0.76 -4.9 4,119,841 + Psyr_3456 0.76 -4.7 4,119,842 - Psyr_3456 0.76 -0.3 4,119,842 - Psyr_3456 0.76 -2.2 4,119,842 - Psyr_3456 0.76 +0.1 4,119,842 - Psyr_3456 0.76 +3.6 4,119,842 - Psyr_3456 0.76 -2.5 4,120,033 - -1.0 4,120,172 + -2.0 4,120,173 - +0.6 4,120,200 + -2.3 4,120,200 + +1.6 4,120,200 + -2.5 4,120,200 + -3.0 4,120,201 - +3.9 4,120,222 + -3.9 4,120,342 + Psyr_3457 0.15 +0.3 4,120,343 - Psyr_3457 0.15 -1.7 4,120,418 + Psyr_3457 0.19 -0.3 4,120,418 + Psyr_3457 0.19 -1.6 4,120,418 + Psyr_3457 0.19 +3.0 4,120,418 + Psyr_3457 0.19 -0.7 4,121,031 - Psyr_3457 0.53 -0.2 4,121,277 - Psyr_3457 0.67 +3.2 4,121,391 + Psyr_3457 0.74 -2.6 4,121,506 + Psyr_3457 0.80 +0.3 4,121,532 + Psyr_3457 0.81 -1.6 4,121,594 + Psyr_3457 0.85 +2.0 4,121,594 + Psyr_3457 0.85 +3.2 4,121,594 + Psyr_3457 0.85 +2.8 4,121,595 - Psyr_3457 0.85 +2.0 4,121,595 - Psyr_3457 0.85 +1.2 4,121,595 - Psyr_3457 0.85 -0.3 4,121,793 + -1.0 4,121,842 - -0.0 4,121,870 + -5.1 4,121,870 + +1.6 4,121,870 + -0.6 4,121,870 + +0.1 4,121,870 + -1.6 4,121,870 + -0.0 4,121,871 - -3.7 4,121,871 - +4.1 4,121,926 - Psyr_3458 0.14 +2.6 4,121,926 - Psyr_3458 0.14 -0.8 4,122,187 - -0.8 4,122,213 + -4.1 4,122,213 + -4.4 4,122,213 + +2.6 4,122,213 + -0.0 4,122,213 + -1.6 4,122,213 + -1.0 4,122,213 + +2.0 4,122,213 + -4.1 4,122,213 + -3.7 4,122,213 + +3.2 4,122,213 + -3.2 4,122,213 + -2.3 4,122,213 + -3.7 4,122,213 + -4.9 4,122,214 - +0.5 4,122,214 - -2.4 4,122,214 - +3.7 4,122,214 - -2.1 4,122,214 - -1.0 4,122,214 - -0.2 4,122,214 - -0.8 4,122,214 - +2.6 4,122,214 - -0.5 4,122,214 - +3.3 4,122,266 + +2.8 4,122,267 - +3.0 4,122,268 + +1.0 4,122,268 + -1.5 4,122,269 - +1.0 4,122,392 + +3.4 4,122,392 + +3.4 4,122,392 + -2.1 4,122,392 + +2.6 4,122,393 - +1.6 4,122,406 + -3.4 4,122,407 - +2.8 4,122,521 + +4.3 4,122,521 + +3.9 4,122,522 - +1.0
Or see this region's nucleotide sequence