Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3453

Experiment: KB with Mitomycin C 0.625 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3451 and Psyr_3452 overlap by 41 nucleotidesPsyr_3452 and Psyr_3453 are separated by 84 nucleotidesPsyr_3453 and Psyr_3454 are separated by 6 nucleotides Psyr_3451: Psyr_3451 - Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E, at 4,114,333 to 4,116,039 _3451 Psyr_3452: Psyr_3452 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,115,999 to 4,116,346 _3452 Psyr_3453: Psyr_3453 - flagellar protein FliJ, putative, at 4,116,431 to 4,116,880 _3453 Psyr_3454: Psyr_3454 - ATPase FliI/YscN, at 4,116,887 to 4,118,245 _3454 Position (kb) 4116 4117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4115.465 kb on + strand, within Psyr_3451at 4115.465 kb on + strand, within Psyr_3451at 4115.465 kb on + strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.601 kb on - strand, within Psyr_3451at 4115.601 kb on - strand, within Psyr_3451at 4115.653 kb on + strand, within Psyr_3451at 4115.706 kb on - strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4116.044 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.296 kb on - strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.298 kb on + strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.388 kb on - strandat 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.624 kb on + strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4117.039 kb on - strand, within Psyr_3454at 4117.290 kb on + strand, within Psyr_3454at 4117.290 kb on + strand, within Psyr_3454at 4117.291 kb on - strand, within Psyr_3454at 4117.300 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.492 kb on - strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml
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4,115,465 + Psyr_3451 0.66 -2.2
4,115,465 + Psyr_3451 0.66 -0.5
4,115,465 + Psyr_3451 0.66 -1.3
4,115,466 - Psyr_3451 0.66 +0.6
4,115,466 - Psyr_3451 0.66 -4.7
4,115,466 - Psyr_3451 0.66 +2.8
4,115,466 - Psyr_3451 0.66 -4.4
4,115,466 - Psyr_3451 0.66 +2.8
4,115,601 - Psyr_3451 0.74 -0.5
4,115,601 - Psyr_3451 0.74 -2.7
4,115,653 + Psyr_3451 0.77 -0.7
4,115,706 - Psyr_3451 0.80 +1.0
4,115,718 + Psyr_3451 0.81 +4.0
4,115,718 + Psyr_3451 0.81 -1.2
4,115,718 + Psyr_3451 0.81 +2.3
4,115,718 + Psyr_3451 0.81 -0.0
4,115,718 + Psyr_3451 0.81 +1.6
4,115,719 - Psyr_3451 0.81 +2.3
4,115,719 - Psyr_3451 0.81 -0.0
4,115,719 - Psyr_3451 0.81 -3.0
4,115,719 - Psyr_3451 0.81 -0.3
4,115,719 - Psyr_3451 0.81 -1.6
4,115,719 - Psyr_3451 0.81 -1.0
4,116,044 + Psyr_3452 0.13 -1.6
4,116,219 + Psyr_3452 0.63 -1.5
4,116,219 + Psyr_3452 0.63 +1.0
4,116,219 + Psyr_3452 0.63 -1.2
4,116,219 + Psyr_3452 0.63 +2.3
4,116,219 + Psyr_3452 0.63 +2.0
4,116,220 - Psyr_3452 0.64 -0.2
4,116,220 - Psyr_3452 0.64 -1.3
4,116,220 - Psyr_3452 0.64 +3.3
4,116,220 - Psyr_3452 0.64 -0.4
4,116,220 - Psyr_3452 0.64 -3.3
4,116,247 - Psyr_3452 0.71 +1.6
4,116,247 - Psyr_3452 0.71 -1.6
4,116,247 - Psyr_3452 0.71 -0.0
4,116,247 - Psyr_3452 0.71 +1.0
4,116,296 - Psyr_3452 0.85 -1.7
4,116,297 + Psyr_3452 0.86 +2.3
4,116,297 + Psyr_3452 0.86 +0.6
4,116,298 + Psyr_3452 0.86 +0.9
4,116,298 - Psyr_3452 0.86 -1.6
4,116,298 - Psyr_3452 0.86 -0.0
4,116,298 - Psyr_3452 0.86 +1.0
4,116,298 - Psyr_3452 0.86 -0.0
4,116,298 - Psyr_3452 0.86 -3.1
4,116,298 - Psyr_3452 0.86 -0.0
4,116,298 - Psyr_3452 0.86 -2.9
4,116,298 - Psyr_3452 0.86 -3.6
4,116,298 - Psyr_3452 0.86 +2.3
4,116,388 - -1.7
4,116,522 + Psyr_3453 0.20 -2.8
4,116,522 + Psyr_3453 0.20 -1.0
4,116,522 + Psyr_3453 0.20 -2.2
4,116,522 + Psyr_3453 0.20 -3.0
4,116,522 + Psyr_3453 0.20 +2.6
4,116,522 + Psyr_3453 0.20 -1.0
4,116,523 - Psyr_3453 0.20 -0.6
4,116,523 - Psyr_3453 0.20 -1.4
4,116,523 - Psyr_3453 0.20 -1.0
4,116,624 + Psyr_3453 0.43 -0.8
4,116,625 - Psyr_3453 0.43 +3.2
4,116,625 - Psyr_3453 0.43 +3.3
4,117,039 - Psyr_3454 0.11 -0.9
4,117,290 + Psyr_3454 0.30 -2.0
4,117,290 + Psyr_3454 0.30 +2.0
4,117,291 - Psyr_3454 0.30 -1.1
4,117,300 + Psyr_3454 0.30 -2.9
4,117,303 + Psyr_3454 0.31 -1.8
4,117,303 + Psyr_3454 0.31 +2.3
4,117,303 + Psyr_3454 0.31 -3.2
4,117,303 + Psyr_3454 0.31 -1.9
4,117,303 + Psyr_3454 0.31 -0.0
4,117,303 + Psyr_3454 0.31 +1.2
4,117,304 - Psyr_3454 0.31 +1.0
4,117,304 - Psyr_3454 0.31 +0.9
4,117,492 - Psyr_3454 0.45 -1.4
4,117,512 + Psyr_3454 0.46 -2.2
4,117,512 + Psyr_3454 0.46 -2.5
4,117,512 + Psyr_3454 0.46 -2.7
4,117,512 + Psyr_3454 0.46 -0.7
4,117,513 - Psyr_3454 0.46 -1.8
4,117,513 - Psyr_3454 0.46 +0.4
4,117,513 - Psyr_3454 0.46 -1.1
4,117,513 - Psyr_3454 0.46 +2.6
4,117,513 - Psyr_3454 0.46 -0.8
4,117,513 - Psyr_3454 0.46 +1.2
4,117,513 - Psyr_3454 0.46 -0.7
4,117,513 - Psyr_3454 0.46 -0.8
4,117,513 - Psyr_3454 0.46 -0.0

Or see this region's nucleotide sequence