Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3423 and Psyr_3424 are separated by 14 nucleotides Psyr_3424 and Psyr_3425 are separated by 152 nucleotides Psyr_3425 and Psyr_3426 are separated by 61 nucleotides
Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835
_3423
Psyr_3424: Psyr_3424 - conserved hypothetical protein, at 4,088,850 to 4,089,317
_3424
Psyr_3425: Psyr_3425 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 4,089,470 to 4,090,204
_3425
Psyr_3426: Psyr_3426 - adenine phosphoribosyltransferase, at 4,090,266 to 4,090,814
_3426
Position (kb) 4088
4089
4090 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4087.885 kb on + strand, within Psyr_3423 at 4087.885 kb on + strand, within Psyr_3423 at 4087.886 kb on - strand, within Psyr_3423 at 4088.095 kb on + strand, within Psyr_3423 at 4088.096 kb on - strand, within Psyr_3423 at 4088.096 kb on - strand, within Psyr_3423 at 4088.096 kb on - strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.185 kb on + strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.186 kb on - strand, within Psyr_3423 at 4088.311 kb on + strand, within Psyr_3423 at 4088.312 kb on - strand, within Psyr_3423 at 4088.312 kb on - strand, within Psyr_3423 at 4088.312 kb on - strand, within Psyr_3423 at 4088.398 kb on + strand, within Psyr_3423 at 4088.398 kb on + strand, within Psyr_3423 at 4088.398 kb on + strand, within Psyr_3423 at 4088.400 kb on + strand, within Psyr_3423 at 4088.400 kb on + strand, within Psyr_3423 at 4088.400 kb on + strand, within Psyr_3423 at 4088.401 kb on - strand, within Psyr_3423 at 4088.467 kb on + strand, within Psyr_3423 at 4088.656 kb on + strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.657 kb on - strand, within Psyr_3423 at 4088.789 kb on - strand at 4088.831 kb on + strand at 4088.831 kb on + strand at 4088.851 kb on + strand at 4088.852 kb on - strand at 4088.966 kb on + strand, within Psyr_3424 at 4088.967 kb on - strand, within Psyr_3424 at 4088.967 kb on - strand, within Psyr_3424 at 4088.967 kb on - strand, within Psyr_3424 at 4088.967 kb on - strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.253 kb on + strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.254 kb on - strand, within Psyr_3424 at 4089.348 kb on - strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.440 kb on + strand at 4089.441 kb on - strand at 4089.441 kb on - strand at 4089.441 kb on - strand at 4089.464 kb on + strand at 4089.464 kb on + strand at 4089.555 kb on + strand, within Psyr_3425 at 4089.555 kb on + strand, within Psyr_3425 at 4089.660 kb on - strand, within Psyr_3425 at 4089.694 kb on + strand, within Psyr_3425 at 4089.751 kb on - strand at 4090.095 kb on + strand, within Psyr_3425 at 4090.096 kb on - strand, within Psyr_3425 at 4090.099 kb on + strand, within Psyr_3425 at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.146 kb on + strand at 4090.147 kb on - strand at 4090.147 kb on - strand at 4090.147 kb on - strand at 4090.147 kb on - strand at 4090.231 kb on + strand at 4090.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,087,885 + Psyr_3423 0.31 +1.6 4,087,885 + Psyr_3423 0.31 +2.3 4,087,886 - Psyr_3423 0.31 +4.9 4,088,095 + Psyr_3423 0.47 +2.3 4,088,096 - Psyr_3423 0.47 -2.3 4,088,096 - Psyr_3423 0.47 -3.2 4,088,096 - Psyr_3423 0.47 +1.6 4,088,185 + Psyr_3423 0.53 -4.8 4,088,185 + Psyr_3423 0.53 -1.4 4,088,185 + Psyr_3423 0.53 +3.2 4,088,185 + Psyr_3423 0.53 -3.0 4,088,185 + Psyr_3423 0.53 -0.9 4,088,185 + Psyr_3423 0.53 -2.2 4,088,185 + Psyr_3423 0.53 -1.9 4,088,185 + Psyr_3423 0.53 -1.6 4,088,185 + Psyr_3423 0.53 -1.6 4,088,186 - Psyr_3423 0.53 -0.5 4,088,186 - Psyr_3423 0.53 -2.1 4,088,186 - Psyr_3423 0.53 -0.5 4,088,186 - Psyr_3423 0.53 +3.7 4,088,186 - Psyr_3423 0.53 -1.4 4,088,186 - Psyr_3423 0.53 +2.0 4,088,311 + Psyr_3423 0.62 -0.0 4,088,312 - Psyr_3423 0.62 -0.8 4,088,312 - Psyr_3423 0.62 -1.9 4,088,312 - Psyr_3423 0.62 -3.8 4,088,398 + Psyr_3423 0.68 +3.8 4,088,398 + Psyr_3423 0.68 +5.1 4,088,398 + Psyr_3423 0.68 -1.6 4,088,400 + Psyr_3423 0.69 -0.3 4,088,400 + Psyr_3423 0.69 +3.0 4,088,400 + Psyr_3423 0.69 -3.3 4,088,401 - Psyr_3423 0.69 -1.5 4,088,467 + Psyr_3423 0.73 -0.1 4,088,656 + Psyr_3423 0.87 -1.1 4,088,657 - Psyr_3423 0.87 -0.0 4,088,657 - Psyr_3423 0.87 -0.3 4,088,657 - Psyr_3423 0.87 +2.0 4,088,789 - -3.2 4,088,831 + +3.0 4,088,831 + -0.3 4,088,851 + -2.8 4,088,852 - -1.0 4,088,966 + Psyr_3424 0.25 +2.8 4,088,967 - Psyr_3424 0.25 +1.0 4,088,967 - Psyr_3424 0.25 -1.1 4,088,967 - Psyr_3424 0.25 -3.3 4,088,967 - Psyr_3424 0.25 -3.0 4,089,253 + Psyr_3424 0.86 -0.0 4,089,253 + Psyr_3424 0.86 +0.1 4,089,253 + Psyr_3424 0.86 +1.0 4,089,253 + Psyr_3424 0.86 -4.3 4,089,254 - Psyr_3424 0.86 -1.6 4,089,254 - Psyr_3424 0.86 -1.2 4,089,254 - Psyr_3424 0.86 +0.8 4,089,254 - Psyr_3424 0.86 -2.6 4,089,254 - Psyr_3424 0.86 -0.4 4,089,348 - +2.6 4,089,440 + -3.7 4,089,440 + -0.4 4,089,440 + +2.0 4,089,440 + +4.0 4,089,440 + +2.6 4,089,440 + +3.3 4,089,441 - -0.0 4,089,441 - -2.2 4,089,441 - -0.0 4,089,464 + -0.0 4,089,464 + -0.0 4,089,555 + Psyr_3425 0.12 +3.7 4,089,555 + Psyr_3425 0.12 -3.6 4,089,660 - Psyr_3425 0.26 +2.3 4,089,694 + Psyr_3425 0.30 +1.6 4,089,751 - -0.0 4,090,095 + Psyr_3425 0.85 +3.2 4,090,096 - Psyr_3425 0.85 -0.0 4,090,099 + Psyr_3425 0.86 +3.4 4,090,146 + -0.4 4,090,146 + +1.0 4,090,146 + -1.2 4,090,146 + +2.0 4,090,146 + +2.3 4,090,147 - -0.0 4,090,147 - +1.6 4,090,147 - -0.0 4,090,147 - -3.8 4,090,231 + -2.8 4,090,232 - +3.0
Or see this region's nucleotide sequence