Experiment: KB with Mitomycin C 0.625 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3408 and Psyr_3409 are separated by 417 nucleotides Psyr_3409 and Psyr_3410 are separated by 50 nucleotides
Psyr_3408: Psyr_3408 - Outer membrane autotransporter barrel, at 4,068,972 to 4,071,101
_3408
Psyr_3409: Psyr_3409 - conserved hypothetical protein, at 4,071,519 to 4,073,348
_3409
Psyr_3410: Psyr_3410 - hypothetical protein, at 4,073,399 to 4,076,032
_3410
Position (kb) 4071
4072
4073
4074 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 4070.572 kb on + strand, within Psyr_3408 at 4070.572 kb on + strand, within Psyr_3408 at 4070.623 kb on - strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.643 kb on + strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.644 kb on - strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.647 kb on + strand, within Psyr_3408 at 4070.648 kb on - strand, within Psyr_3408 at 4070.648 kb on - strand, within Psyr_3408 at 4070.708 kb on + strand, within Psyr_3408 at 4070.741 kb on + strand, within Psyr_3408 at 4070.742 kb on - strand, within Psyr_3408 at 4070.742 kb on - strand, within Psyr_3408 at 4070.883 kb on - strand, within Psyr_3408 at 4070.944 kb on - strand at 4070.973 kb on - strand at 4071.018 kb on + strand at 4071.025 kb on + strand at 4071.025 kb on + strand at 4071.026 kb on - strand at 4071.026 kb on - strand at 4071.026 kb on - strand at 4071.029 kb on + strand at 4071.030 kb on - strand at 4071.030 kb on - strand at 4071.055 kb on + strand at 4071.055 kb on + strand at 4071.055 kb on + strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.056 kb on - strand at 4071.149 kb on - strand at 4071.359 kb on - strand at 4071.574 kb on + strand at 4071.615 kb on - strand at 4071.616 kb on + strand at 4071.690 kb on + strand at 4071.724 kb on + strand, within Psyr_3409 at 4071.724 kb on + strand, within Psyr_3409 at 4071.764 kb on - strand, within Psyr_3409 at 4071.766 kb on + strand, within Psyr_3409 at 4071.767 kb on - strand, within Psyr_3409 at 4071.825 kb on + strand, within Psyr_3409 at 4071.882 kb on - strand, within Psyr_3409 at 4071.922 kb on - strand, within Psyr_3409 at 4071.922 kb on - strand, within Psyr_3409 at 4071.988 kb on + strand, within Psyr_3409 at 4071.988 kb on + strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4071.989 kb on - strand, within Psyr_3409 at 4072.048 kb on - strand, within Psyr_3409 at 4072.170 kb on + strand, within Psyr_3409 at 4072.170 kb on + strand, within Psyr_3409 at 4072.170 kb on + strand, within Psyr_3409 at 4072.171 kb on - strand, within Psyr_3409 at 4072.171 kb on - strand, within Psyr_3409 at 4072.171 kb on - strand, within Psyr_3409 at 4072.171 kb on - strand, within Psyr_3409 at 4072.171 kb on - strand, within Psyr_3409 at 4072.173 kb on + strand, within Psyr_3409 at 4072.173 kb on + strand, within Psyr_3409 at 4072.399 kb on + strand, within Psyr_3409 at 4072.412 kb on + strand, within Psyr_3409 at 4072.413 kb on - strand, within Psyr_3409 at 4072.413 kb on - strand, within Psyr_3409 at 4072.509 kb on + strand, within Psyr_3409 at 4072.510 kb on - strand, within Psyr_3409 at 4072.620 kb on - strand, within Psyr_3409 at 4072.756 kb on + strand, within Psyr_3409 at 4072.756 kb on + strand, within Psyr_3409 at 4072.756 kb on + strand, within Psyr_3409 at 4072.771 kb on - strand, within Psyr_3409 at 4072.832 kb on + strand, within Psyr_3409 at 4072.832 kb on + strand, within Psyr_3409 at 4072.833 kb on - strand, within Psyr_3409 at 4072.873 kb on - strand, within Psyr_3409 at 4072.875 kb on + strand, within Psyr_3409 at 4072.875 kb on + strand, within Psyr_3409 at 4072.876 kb on - strand, within Psyr_3409 at 4072.992 kb on - strand, within Psyr_3409 at 4073.065 kb on - strand, within Psyr_3409 at 4073.068 kb on + strand, within Psyr_3409 at 4073.068 kb on + strand, within Psyr_3409 at 4073.068 kb on + strand, within Psyr_3409 at 4073.069 kb on - strand, within Psyr_3409 at 4073.069 kb on - strand, within Psyr_3409 at 4073.069 kb on - strand, within Psyr_3409 at 4073.103 kb on + strand, within Psyr_3409 at 4073.103 kb on + strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.112 kb on + strand, within Psyr_3409 at 4073.113 kb on - strand, within Psyr_3409 at 4073.202 kb on - strand at 4073.222 kb on - strand at 4073.276 kb on + strand at 4073.370 kb on + strand at 4073.371 kb on - strand at 4073.450 kb on + strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.452 kb on + strand at 4073.481 kb on + strand at 4073.481 kb on + strand at 4073.481 kb on + strand at 4073.508 kb on + strand at 4073.509 kb on - strand at 4073.521 kb on + strand at 4073.522 kb on - strand at 4073.578 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.636 kb on + strand at 4073.636 kb on + strand at 4073.636 kb on + strand at 4073.636 kb on + strand at 4073.637 kb on - strand at 4073.637 kb on - strand at 4073.637 kb on - strand at 4073.669 kb on - strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.687 kb on + strand, within Psyr_3410 at 4073.688 kb on - strand, within Psyr_3410 at 4073.688 kb on - strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.690 kb on - strand, within Psyr_3410 at 4073.690 kb on - strand, within Psyr_3410 at 4073.690 kb on - strand, within Psyr_3410 at 4073.736 kb on + strand, within Psyr_3410 at 4073.737 kb on - strand, within Psyr_3410 at 4073.912 kb on + strand, within Psyr_3410 at 4073.912 kb on + strand, within Psyr_3410 at 4073.912 kb on + strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.966 kb on - strand, within Psyr_3410 at 4073.998 kb on + strand, within Psyr_3410 at 4073.999 kb on - strand, within Psyr_3410 at 4074.025 kb on + strand, within Psyr_3410 at 4074.026 kb on - strand, within Psyr_3410 at 4074.061 kb on + strand, within Psyr_3410 at 4074.061 kb on + strand, within Psyr_3410 at 4074.062 kb on - strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.237 kb on + strand, within Psyr_3410 at 4074.237 kb on + strand, within Psyr_3410 at 4074.237 kb on + strand, within Psyr_3410 at 4074.256 kb on + strand, within Psyr_3410 at 4074.257 kb on - strand, within Psyr_3410 at 4074.312 kb on + strand, within Psyr_3410 at 4074.312 kb on + strand, within Psyr_3410 at 4074.312 kb on + strand, within Psyr_3410 at 4074.313 kb on - strand, within Psyr_3410
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Mitomycin C 0.625 ug/ml remove 4,070,572 + Psyr_3408 0.75 +3.3 4,070,572 + Psyr_3408 0.75 -2.0 4,070,623 - Psyr_3408 0.78 -0.7 4,070,643 + Psyr_3408 0.78 -5.4 4,070,643 + Psyr_3408 0.78 -1.8 4,070,643 + Psyr_3408 0.78 -3.3 4,070,644 - Psyr_3408 0.78 -0.0 4,070,644 - Psyr_3408 0.78 -5.2 4,070,644 - Psyr_3408 0.78 +0.8 4,070,644 - Psyr_3408 0.78 -1.8 4,070,644 - Psyr_3408 0.78 -2.9 4,070,644 - Psyr_3408 0.78 +0.2 4,070,644 - Psyr_3408 0.78 -2.6 4,070,644 - Psyr_3408 0.78 -0.8 4,070,647 + Psyr_3408 0.79 -6.2 4,070,647 + Psyr_3408 0.79 -3.9 4,070,647 + Psyr_3408 0.79 -1.9 4,070,648 - Psyr_3408 0.79 -1.2 4,070,648 - Psyr_3408 0.79 +2.8 4,070,708 + Psyr_3408 0.82 -4.2 4,070,741 + Psyr_3408 0.83 -2.2 4,070,742 - Psyr_3408 0.83 +0.4 4,070,742 - Psyr_3408 0.83 +1.0 4,070,883 - Psyr_3408 0.90 +2.3 4,070,944 - +1.0 4,070,973 - -1.8 4,071,018 + -0.0 4,071,025 + -1.6 4,071,025 + -1.2 4,071,026 - -2.8 4,071,026 - +2.8 4,071,026 - -0.0 4,071,029 + +2.3 4,071,030 - +2.0 4,071,030 - +2.0 4,071,055 + +2.6 4,071,055 + -4.2 4,071,055 + +3.5 4,071,056 - -0.0 4,071,056 - -2.3 4,071,056 - +0.2 4,071,056 - +2.3 4,071,056 - -2.8 4,071,056 - +2.6 4,071,056 - -0.0 4,071,149 - -1.6 4,071,359 - -2.3 4,071,574 + +1.0 4,071,615 - -2.0 4,071,616 + -2.2 4,071,690 + -2.1 4,071,724 + Psyr_3409 0.11 -0.8 4,071,724 + Psyr_3409 0.11 +2.3 4,071,764 - Psyr_3409 0.13 -3.3 4,071,766 + Psyr_3409 0.13 -3.2 4,071,767 - Psyr_3409 0.14 -2.6 4,071,825 + Psyr_3409 0.17 -1.1 4,071,882 - Psyr_3409 0.20 +3.6 4,071,922 - Psyr_3409 0.22 +1.0 4,071,922 - Psyr_3409 0.22 -4.7 4,071,988 + Psyr_3409 0.26 +2.3 4,071,988 + Psyr_3409 0.26 +2.0 4,071,989 - Psyr_3409 0.26 -0.0 4,071,989 - Psyr_3409 0.26 -4.7 4,071,989 - Psyr_3409 0.26 -0.0 4,072,048 - Psyr_3409 0.29 -4.0 4,072,170 + Psyr_3409 0.36 +0.1 4,072,170 + Psyr_3409 0.36 -0.0 4,072,170 + Psyr_3409 0.36 -0.4 4,072,171 - Psyr_3409 0.36 -0.0 4,072,171 - Psyr_3409 0.36 -0.0 4,072,171 - Psyr_3409 0.36 -4.8 4,072,171 - Psyr_3409 0.36 -3.6 4,072,171 - Psyr_3409 0.36 +2.8 4,072,173 + Psyr_3409 0.36 -2.4 4,072,173 + Psyr_3409 0.36 -0.0 4,072,399 + Psyr_3409 0.48 +3.4 4,072,412 + Psyr_3409 0.49 -0.3 4,072,413 - Psyr_3409 0.49 -1.4 4,072,413 - Psyr_3409 0.49 -0.0 4,072,509 + Psyr_3409 0.54 -1.4 4,072,510 - Psyr_3409 0.54 -1.3 4,072,620 - Psyr_3409 0.60 +2.6 4,072,756 + Psyr_3409 0.68 -2.8 4,072,756 + Psyr_3409 0.68 -0.1 4,072,756 + Psyr_3409 0.68 -0.0 4,072,771 - Psyr_3409 0.68 -0.0 4,072,832 + Psyr_3409 0.72 -1.5 4,072,832 + Psyr_3409 0.72 -0.0 4,072,833 - Psyr_3409 0.72 -2.7 4,072,873 - Psyr_3409 0.74 -2.9 4,072,875 + Psyr_3409 0.74 -2.2 4,072,875 + Psyr_3409 0.74 +0.6 4,072,876 - Psyr_3409 0.74 +1.6 4,072,992 - Psyr_3409 0.80 +3.0 4,073,065 - Psyr_3409 0.84 -2.6 4,073,068 + Psyr_3409 0.85 -2.3 4,073,068 + Psyr_3409 0.85 -2.7 4,073,068 + Psyr_3409 0.85 -1.4 4,073,069 - Psyr_3409 0.85 -2.4 4,073,069 - Psyr_3409 0.85 -1.7 4,073,069 - Psyr_3409 0.85 -1.5 4,073,103 + Psyr_3409 0.87 -1.0 4,073,103 + Psyr_3409 0.87 -0.0 4,073,104 - Psyr_3409 0.87 +3.4 4,073,104 - Psyr_3409 0.87 -0.0 4,073,104 - Psyr_3409 0.87 +0.4 4,073,104 - Psyr_3409 0.87 +1.6 4,073,112 + Psyr_3409 0.87 +1.6 4,073,113 - Psyr_3409 0.87 -0.8 4,073,202 - -2.8 4,073,222 - -2.0 4,073,276 + +1.8 4,073,370 + -1.9 4,073,371 - -0.0 4,073,450 + +2.0 4,073,451 - -0.0 4,073,451 - +2.6 4,073,451 - +2.3 4,073,451 - -2.6 4,073,452 + -3.0 4,073,481 + -3.3 4,073,481 + -0.0 4,073,481 + -0.0 4,073,508 + +3.3 4,073,509 - -0.0 4,073,521 + -0.0 4,073,522 - -2.0 4,073,578 + -1.0 4,073,588 + -0.0 4,073,588 + -0.0 4,073,588 + +3.0 4,073,588 + -4.3 4,073,589 - -1.6 4,073,589 - -4.8 4,073,589 - +3.4 4,073,589 - -0.0 4,073,636 + +1.6 4,073,636 + +2.0 4,073,636 + -2.1 4,073,636 + -1.1 4,073,637 - +2.0 4,073,637 - -2.6 4,073,637 - -0.0 4,073,669 - Psyr_3410 0.10 +3.2 4,073,681 + Psyr_3410 0.11 -3.0 4,073,681 + Psyr_3410 0.11 +1.6 4,073,681 + Psyr_3410 0.11 -5.5 4,073,681 + Psyr_3410 0.11 +2.8 4,073,681 + Psyr_3410 0.11 -1.3 4,073,681 + Psyr_3410 0.11 -2.1 4,073,681 + Psyr_3410 0.11 +2.0 4,073,682 - Psyr_3410 0.11 +2.6 4,073,682 - Psyr_3410 0.11 -2.8 4,073,682 - Psyr_3410 0.11 +2.6 4,073,682 - Psyr_3410 0.11 -5.1 4,073,682 - Psyr_3410 0.11 -0.0 4,073,682 - Psyr_3410 0.11 -1.7 4,073,682 - Psyr_3410 0.11 -2.9 4,073,687 + Psyr_3410 0.11 +2.0 4,073,688 - Psyr_3410 0.11 +3.3 4,073,688 - Psyr_3410 0.11 +1.0 4,073,689 + Psyr_3410 0.11 -0.6 4,073,689 + Psyr_3410 0.11 -1.9 4,073,689 + Psyr_3410 0.11 +1.0 4,073,690 - Psyr_3410 0.11 +2.6 4,073,690 - Psyr_3410 0.11 -1.8 4,073,690 - Psyr_3410 0.11 -1.0 4,073,736 + Psyr_3410 0.13 -0.0 4,073,737 - Psyr_3410 0.13 -0.0 4,073,912 + Psyr_3410 0.19 -0.0 4,073,912 + Psyr_3410 0.19 -1.8 4,073,912 + Psyr_3410 0.19 +1.6 4,073,913 - Psyr_3410 0.20 -3.5 4,073,913 - Psyr_3410 0.20 +3.9 4,073,913 - Psyr_3410 0.20 -0.0 4,073,913 - Psyr_3410 0.20 -2.9 4,073,966 - Psyr_3410 0.22 -0.7 4,073,998 + Psyr_3410 0.23 +0.3 4,073,999 - Psyr_3410 0.23 +2.0 4,074,025 + Psyr_3410 0.24 -0.0 4,074,026 - Psyr_3410 0.24 -0.8 4,074,061 + Psyr_3410 0.25 -1.6 4,074,061 + Psyr_3410 0.25 -1.2 4,074,062 - Psyr_3410 0.25 -1.5 4,074,089 + Psyr_3410 0.26 -2.6 4,074,089 + Psyr_3410 0.26 -0.8 4,074,089 + Psyr_3410 0.26 -0.9 4,074,089 + Psyr_3410 0.26 -1.6 4,074,089 + Psyr_3410 0.26 -3.1 4,074,090 - Psyr_3410 0.26 +1.6 4,074,237 + Psyr_3410 0.32 -1.2 4,074,237 + Psyr_3410 0.32 +3.4 4,074,237 + Psyr_3410 0.32 +3.4 4,074,256 + Psyr_3410 0.33 -0.0 4,074,257 - Psyr_3410 0.33 -0.0 4,074,312 + Psyr_3410 0.35 -3.3 4,074,312 + Psyr_3410 0.35 -1.5 4,074,312 + Psyr_3410 0.35 -2.2 4,074,313 - Psyr_3410 0.35 +4.2
Or see this region's nucleotide sequence